BAC Information

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BAC

Clone NameB6Ng01-280D08
ChromosomeX (Build37)
Map Location 88,580,621 - 88,581,844
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC194615, LOC629471, LOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2
Downstream geneEG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280D08.bB6Ng01-280D08.g
ACCGA079992GA079993
length1,2401,230
definitionB6Ng01-280D08.b B6Ng01-280D08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagcccaagaaacaacttaaatattattttg
gaatttgagagtgttacaaagaaatgtcttccacctagggcaagaatgga
cagtcaatttttttgccacagagaagatgaatatattataccaactgtac
atatgatgttgaaattttttttgaaaaaatacaagtgatacttgagaaga
cgtactaaaatgccactaagtgcttattcttagtatacacagatatagcc
agagtcttgtccattaatagggaattttattaagtcacaatattcagtct
aaataattttagtagggctgaagtgatggctaagagcaatggctgctgtt
cactttccagtacccatgtggtggctcacaaccatctgtaactctagttc
tagagggtccaatgccttctggcctccatgaatactgtgtgcacaggatg
cacagatatacatgcaggcaaaacactgattaaaaaataaaaataatctt
aatgataactaccatgcctttaaagacacagtctctgccttataatgtgc
catgtgaactttatcagatttaaaatgcagtctaagaactagaagtttct
gaagtcaacaagaatagtacaaagaacagctagagtagtcacttaatgaa
ttcctcagaagtaaacagcactgcactcctccaagccagaggcaggcctt
gtgtcactgaatcatttttactcattactttaaaaattctggcagtaaat
gtatgactttcaaccgaaaatactgcttttgcaatgcagagttaaaagaa
agagcaaagaaaattaaaatatataactgaggaactgatgcaggaggact
gggagtttgaggacagcattcaagacctcctggaatgcatagcaagaccc
atcacaaaggattacttgacagtatttgcctaaaactcaaacaatttaga
ggtttcacaaaccatagctttaagctttccttatagaacgttagttattc
tttacatagaaatttacataaaaggcccggccttttatgggaagagttac
attatagatcttccagttcttttgttattttacagcagacactgttcctg
gagctttcgatttacttatttcagttgctattgattatttgttactggcg
catatttcttatttttctatagggtcttgcacagggtataacagttggaa
gtgagtagctattacttagaagtcctcttctccaaagaga
gaattctttatagggatccacaggcaaggtgaaagtgttgcattgctaat
taattctgctcaaatccttgatacccacccccaaattctgggttccggaa
ggaaagacacacacatacaaagccttatattttagtgtgccttaaacagt
tcattggctgggctactcccaaacctacatatggtgtacacatctccctc
aatattcctgagttatcactaaaaatctgtattctatctttgctgcccta
gacccagtgggatggtgctcttcccagaactcttacccagctgttacaag
actggtatgctctctcatctgccttctcaagcctagaccttactccattc
tggcatggtggctctacctccttcttcctctctcagtcatcttgcctgtg
aatcccaaggtcttgcttctgtctctctgcctagctattggccactggca
actttatttaccaatcaaaaccaactggtggaagggacccttagcatctt
acatgctgagtctttgcaattttgggaacccaattaacataatacaagtg
ttagaacctattccactccctccaacaagatcatacctactcctaaaagg
ccacacctcctaatcctttcaaatagtgttattttaagcaaccaagcatt
caagtctacaagcctatgaggaccatgcttggtcaaactaccacaggctc
ttaatttcttccttccttctcttctttaatgtttcctgagctttatatat
aggagttgtattgaagatgtgctaactgtggctagacacatcatattcag
ttattctctgcattttgatcagtagtggatttttgtagttgcttgtgtct
gctgcaaaaacaagcaattttgaggagaggtgagagttaaacttactatg
gatataatgatatgtttttgaaatatgataggcagttttatggatttagg
aagatagcagtagaaatctcttctcatggatcctggggtaggtaaacaat
acagggcatgtatttctatgttgagtgagctttaatccattagaaagttg
aaagtgtcattatttgctcctactagccatgtgaggtacaggctttagag
cagatattttttctttcttggccaagtgcttactacttctgtagtttatg
agaacttgaactacagatagaacactcaaggtcaagcagatagacgttgg
tatttctcttccaagggtgtgttatacgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_88580621_88581844
seq2: B6Ng01-280D08.b_44_1283

seq1  GAATTCTTTGTTCAGTTCTGAGCCCAAGAAACAACTTAAATATTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCAAGAAACAACTTAAATATTATTTTG  50

seq1  GAATTTGAGAGTGTTACAAAGAAATGTCTTCCACCTAGGGCAAGAATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAGAGTGTTACAAAGAAATGTCTTCCACCTAGGGCAAGAATGGA  100

seq1  CAGTCAATTTTTTTGCCACAGAGAAGATGAATATATTATACCAACTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATTTTTTTGCCACAGAGAAGATGAATATATTATACCAACTGTAC  150

seq1  ATATGATGTTGAAATTTTTTTTGAAAAAATACAAGTGATACTTGAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGTTGAAATTTTTTTTGAAAAAATACAAGTGATACTTGAGAAGA  200

seq1  CGTACTAAAATGCCACTAAGTGCTTATTCTTAGTATACACAGATATAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTAAAATGCCACTAAGTGCTTATTCTTAGTATACACAGATATAGCC  250

seq1  AGAGTCTTGTCCATTAATAGGGAATTTTATTAAGTCACAATATTCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTGTCCATTAATAGGGAATTTTATTAAGTCACAATATTCAGTCT  300

seq1  AAATAATTTTAGTAGGGCTGAAGTGATGGCTAAGAGCAATGGCTGCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTAGTAGGGCTGAAGTGATGGCTAAGAGCAATGGCTGCTGTT  350

seq1  CACTTTCCAGTACCCATGTGGTGGCTCACAACCATCTGTAACTCTAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCAGTACCCATGTGGTGGCTCACAACCATCTGTAACTCTAGTTC  400

seq1  TAGAGGGTCCAATGCCTTCTGGCCTCCATGAATACTGTGTGCACAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTCCAATGCCTTCTGGCCTCCATGAATACTGTGTGCACAGGATG  450

seq1  CACAGATATACATGCAGGCAAAACACTGATTAAAAAATAAAAATAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATACATGCAGGCAAAACACTGATTAAAAAATAAAAATAATCTT  500

seq1  AATGATAACTACCATGCCTTTAAAGACACAGTCTCTGCCTTATAATGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACTACCATGCCTTTAAAGACACAGTCTCTGCCTTATAATGTGC  550

seq1  CATGTGAACTTTATCAGATTTAAAATGCAGTCTAAGAACTAGAAGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAACTTTATCAGATTTAAAATGCAGTCTAAGAACTAGAAGTTTCT  600

seq1  GAAGTCAACAAGAATAGTACAAAGAACAGCTAGAGTAGTCACTTAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAACAAGAATAGTACAAAGAACAGCTAGAGTAGTCACTTAATGAA  650

seq1  TTCCTCAGAAGTAAACAGCACTGCACTCCTCCAAGCCAGAGGCAGGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGAAGTAAACAGCACTGCACTCCTCCAAGCCAGAGGCAGGCCTT  700

seq1  GTGTCACTGAATCATTTTTACTCATTACTTTAAAAATTCTGGCAGTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTGAATCATTTTTACTCATTACTTTAAAAATTCTGGCAGTAAAT  750

seq1  GTATGACTTTCAACCGAAAATACTGCTTTTGCAATGCAGAGTTAAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTTTCAACCGAAAATACTGCTTTTGCAATGCAGAGTTAAAAGAA  800

seq1  AGAGCAAAGAAAATTAAAATATATAACTGAGGAACTGATGCAGGAGGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGAAAATTAAAATATATAACTGAGGAACTGATGCAGGAGGACT  850

seq1  GGGAGTTTGAGGACAGCATTCAAGACCTCCTGGAATGCATAGCAAGACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTGAGGACAGCATTCAAGACCTCCTGGAATGCATAGCAAGACCC  900

seq1  ATCACAAAGGATTACTTGACAGTATTTGCCTAAAACTCAAACAA-TTAGA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCACAAAGGATTACTTGACAGTATTTGCCTAAAACTCAAACAATTTAGA  950

seq1  GG-TTCACAAACCATAGCTTTAAGCTTTCC-TATAGAACGTTAGT--ATC  995
      || ||||||||||||||||||||||||||| ||||||||||||||   ||
seq2  GGTTTCACAAACCATAGCTTTAAGCTTTCCTTATAGAACGTTAGTTATTC  1000

seq1  TTTACATAGAAA-TTACATAAAAGGCCCGGCC-TGTAT-GGAAGAGTTAC  1042
      |||||||||||| ||||||||||||||||||| | ||| |||||||||||
seq2  TTTACATAGAAATTTACATAAAAGGCCCGGCCTTTTATGGGAAGAGTTAC  1050

seq1  A-TATAGATC-TCCAG-TCTTT--GTATGTAACAGCAGAACAACTG-TCC  1086
      | |||||||| ||||| |||||   ||| | ||||||||   |||| |||
seq2  ATTATAGATCTTCCAGTTCTTTTGTTATTTTACAGCAGA--CACTGTTCC  1098

seq1  T-GAGCTCTCGATTTAC-TATTTCAGTTTGGCTA-TGATTA-TTGTTACT  1132
      | ||||| ||||||||| ||||||||||  |||| |||||| ||||||||
seq2  TGGAGCTTTCGATTTACTTATTTCAGTT--GCTATTGATTATTTGTTACT  1146

seq1  GGCGCATATCT----ATCTCCTATAGGGTC-TGCAGAGGGGTTAATAACA  1177
      ||||||||| |     | | |||||||||| |||| ||||    ||||||
seq2  GGCGCATATTTCTTATTTTTCTATAGGGTCTTGCACAGGG---TATAACA  1193

seq1  AGGGTTTGGAGTGAAGTAGCTATTACTTAGAAGTCTTC----CAAAAGAG  1223
         ||| | |||| ||||||||||||||||||||| ||    | ||||||
seq2  ---GTTGGAAGTG-AGTAGCTATTACTTAGAAGTCCTCTTCTCCAAAGAG  1239

seq1  A  1224
      |
seq2  A  1240