BAC Information

Click to search

BAC

Clone NameB6Ng01-283A12
ChromosomeX (Build37)
Map Location 134,641,619 - 134,775,845
singlet/doubletdoublet
Overlap geneIl1rapl2, 1700025D03Rik
Upstream geneLOC666288, LOC100041260, LOC100041272, LOC669737, Esx1, EG666303
Downstream geneNrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283A12.bB6Ng01-283A12.g
ACCGA082094GA082095
length9601,080
definitionB6Ng01-283A12.b B6Ng01-283A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,641,619 - 134,642,580)(134,774,754 - 134,775,845)
sequence
gaattctgccaggcttgtggaacaaagagcatatcaaatgggatttcttt
gtggatgctgatggcagtggtaaagtgaaagaggattatttaaatacatg
tttaaatattcaaaagctatatgtgctggcatgtaagtgaactagtattt
cctttccctccagtgaccttgagatcaaactacatttatcaaagttctca
ttttatcctcctttgcactcttcctccaacacctaccggcttttaaacgc
atacttgtcatggctctaatcaatgtagccgttttgttttgttttgtttt
gttttgttttgttttgttttgttttgttttgttttgttttgttttgtttt
attttattttattttattttattttattttattttattttattttttcaa
gtcaggatttctctgtgtaatctcttctttgcagaactctagttgtcctg
caccaacctggcctttaattctgcctgtctctgcctctgctgagattaaa
ggtgtgtgctacaatgtatctggttttgagccactccccacatgatttag
agttcagcatcctcagacctgatttgtttcagtctcatgattttttataa
ctacttttcaggttgaaaattgttagcaaatttaatattcatcatatatg
caaatgtagcatgatctggaatatttcaaggattttttttaaggtacaaa
cttgccttcctgtcattttgaaattggcttgaaacagtgctggccctctg
cttaagtgcttaaccagttgctattgtctctgtaccacacagcatttatg
ttcctgataacccatttgctactttctagagtctgtcaccatgttccttt
taaaaatagcattgaaaaataaagttgtagtaataatgcacagatggctc
acagaccattttcttcctatctagagaaataaacctttggagtatatatg
ggcatacacc

gaattcactggagggttactgattgtttggattcagccatacaaatattt
tcccatttatttatttatttatttatttatttatttatttatttatttat
ttattattttcatcttcagcagagaacaggttgctagggtttgttattta
tttatttatttattattttcatcttcagcagagaacaggttgctagggtt
tgtttcctaaatggagaatgctcatttctaaaaggctgcacaaaagcatt
tgtttatgaatgattcaccaggtgaataagtcaactcatgttggatttct
ccttttgtttctttttaaagtctcagtaatttatgtctctcttcaacctt
cttaaggcagacctctgctcaccccaggaactctcttccattatcttgct
catcttctctcattcctttcctgcttcttccattatcacctgatctgcat
cttcaccttctaaggcccaaatttcccatcttatctgattacttcaacta
gtcctctccacaaatgccctgtgagaataaaggggaaaatcctacaaaat
tgcaaacagccacataaaatatgctgtgggaaataaaactattagctatg
ggcacattgagcacatgatctaaacatgcaattgtgtatgttttctgttc
tatcttattacatatgcatatgcagcttcaaaggaaataaaaagaaattt
ataataatgttgtacaagtatgctgtgatttatataataaatatgttgca
ggaacttggattttagacgaatcccattttgcaataagaaagctatttcg
agaaattgtattgaaaatgtttcatataggaaatcttttcgttatcaaag
gttagctttctaacttatcattttttaatatctggacattttaaaatttg
atctcctttaaattaaccagcacttaacatttgttttattgagacatgtt
tattagatttataattttcaaataacagtgggggagatagcctctaattt
gataatctataaatatgtacacttacaacacaccatctacttactacata
ttttatatacaaatactattatttccatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_134641619_134642580
seq2: B6Ng01-283A12.b_49_1008

seq1  GAATTCTGCCAGGCTTGTGGAACAAAGAGCATATCAAATGGGATTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAGGCTTGTGGAACAAAGAGCATATCAAATGGGATTTCTTT  50

seq1  GTGGATGCTGATGGCAGTGGTAAAGTGAAAGAGGATTATTTAAATACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTGATGGCAGTGGTAAAGTGAAAGAGGATTATTTAAATACATG  100

seq1  TTTAAATATTCAAAAGCTATATGTGCTGGCATGTAAGTGAACTAGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATTCAAAAGCTATATGTGCTGGCATGTAAGTGAACTAGTATTT  150

seq1  CCTTTCCCTCCAGTGACCTTGAGATCAAACTACATTTATCAAAGTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCTCCAGTGACCTTGAGATCAAACTACATTTATCAAAGTTCTCA  200

seq1  TTTTATCCTCCTTTGCACTCTTCCTCCAACACCTACCGGCTTTTAAACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTCCTTTGCACTCTTCCTCCAACACCTACCGGCTTTTAAACGC  250

seq1  ATACTTGTCATGGCTCTAATCAATGTAGCCGTTTTGTTTTGTTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTCATGGCTCTAATCAATGTAGCCGTTTTGTTTTGTTTTGTTTT  300

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG----  346
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  350

seq1  -TTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTTCAA  395
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTTCAA  400

seq1  GTCAGGATTTCTCTGTGTAATCTCTTCTTTGCAGAACTCTAGTTGTCCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGATTTCTCTGTGTAATCTCTTCTTTGCAGAACTCTAGTTGTCCTG  450

seq1  CACCAACCTGGCCTTTAATTCTGCCTGTCTCTGCCTCTGCTGAGATTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCTGGCCTTTAATTCTGCCTGTCTCTGCCTCTGCTGAGATTAAA  500

seq1  GGTGTGTGCTACAATGTATCTGGTTTTGAGCCACTCCCCACATGATTTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCTACAATGTATCTGGTTTTGAGCCACTCCCCACATGATTTAG  550

seq1  AGTTCAGCATCCTCAGACCTGATTTGTTTCAGTCTCATGATTTTTTATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCATCCTCAGACCTGATTTGTTTCAGTCTCATGATTTTTTATAA  600

seq1  CTACTTTTCAGGTTGAAAATTGTTAGCAAATTTAATATTCATCATATATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCAGGTTGAAAATTGTTAGCAAATTTAATATTCATCATATATG  650

seq1  CAAATGTAGCATGATCTGGAATATTTCAAGGATTTTTTTTAAGGTACAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAGCATGATCTGGAATATTTCAAGGATTTTTTTTAAGGTACAAA  700

seq1  CTTGCCTTCCTGTCATTTTGAAATTGGCTTGAAACAGTGCTGGCCCTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCCTGTCATTTTGAAATTGGCTTGAAACAGTGCTGGCCCTCTG  750

seq1  CTTAAGTGCTTAACCAGTTGCTATTGTCTCTGTACCACACAGCATTTATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGCTTAACCAGTTGCTATTGTCTCTGTACCACACAGCATTTATG  800

seq1  TTCCTGATAACCCATTTGCTACTTTCTAGAGTCTGTCACCATGTTCCTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATAACCCATTTGCTACTTTCTAGAGTCTGTCACCATGTTCCTTT  850

seq1  TAAAAATAGCATTGAAAAATAAAAGTTTGTAGTAATAATGCACAGAATGG  895
      |||||||||||||||||||||||   ||||||||||||||||||| ||||
seq2  TAAAAATAGCATTGAAAAATAAA--GTTGTAGTAATAATGCACAG-ATGG  897

seq1  CTCACAGACCATTTTTCTTCCTTAATCTAGAGAAAATAAACCTTTGGAGT  945
      ||||||||||| ||||||||||  |||||||| |||||||||||||||||
seq2  CTCACAGACCA-TTTTCTTCCT--ATCTAGAG-AAATAAACCTTTGGAGT  943

seq1  ATATATGGGCATACACC  962
      |||||||||||||||||
seq2  ATATATGGGCATACACC  960


seq1: chrX_134774754_134775845
seq2: B6Ng01-283A12.g_63_1142 (reverse)

seq1  ATATGGAAATAATAGTATTTGTTAATTATAAAATTATGTAGGTTAAGGTT  50
      ||||||||||||||||||||||    ||||||| |||||||  ||||  |
seq2  ATATGGAAATAATAGTATTTGT---ATATAAAA-TATGTAG--TAAG--T  42

seq1  AGATGGTGTGTTGTAAGTGTACATATTTTATAAGATTATCAATTTTAGAA  100
      ||||||||||||||||||||||||| ||||| ||||||||||  |||| |
seq2  AGATGGTGTGTTGTAAGTGTACATA-TTTAT-AGATTATCAA-ATTAG-A  88

seq1  GGCTATCT-CCCCACTGTTATTTGAAAATTTATAAATCTAATAAACATGT  149
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  GGCTATCTCCCCCACTGTTATTTGAAAA-TTATAAATCTAATAAACATGT  137

seq1  CTTCAATAAAACAAATGTTAAGTGCTGGTTAATTT-AAGGAGATCAAATT  198
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  C-TCAATAAAACAAATGTTAAGTGCTGGTTAATTTAAAGGAGATCAAATT  186

seq1  TTAAAATGTCCAGATATTAAAAAATGATAAGTTAGAAAGCTAACCTTTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTCCAGATATTAAAAAATGATAAGTTAGAAAGCTAACCTTTGA  236

seq1  TAACGAAAAGATTTCCTATATGAAACATTTTCAATACAATTTCTCGAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAAAAGATTTCCTATATGAAACATTTTCAATACAATTTCTCGAAAT  286

seq1  AGCTTTCTTATTGCAAAATGGGATTCGTCTAAAATCCAAGTTCCTGCAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTTATTGCAAAATGGGATTCGTCTAAAATCCAAGTTCCTGCAAC  336

seq1  ATATTTATTATATAAATCACAGCATACTTGTACAACATTATTATAAATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTATATAAATCACAGCATACTTGTACAACATTATTATAAATTT  386

seq1  CTTTTTATTTCCTTTGAAGCTGCATATGCATATGTAATAAGATAGAACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTTCCTTTGAAGCTGCATATGCATATGTAATAAGATAGAACAG  436

seq1  AAAACATACACAATTGCATGTTTAGATCATGTGCTCAATGTGCCCATAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACACAATTGCATGTTTAGATCATGTGCTCAATGTGCCCATAGC  486

seq1  TAATAGTTTTATTTCCCACAGCATATTTTATGTGGCTGTTTGCAATTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTTTATTTCCCACAGCATATTTTATGTGGCTGTTTGCAATTTTG  536

seq1  TAGGATTTTCCCCTTTATTCTCACAGGGCATTTGTGGAGAGGACTAGTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTTCCCCTTTATTCTCACAGGGCATTTGTGGAGAGGACTAGTTG  586

seq1  AAGTAATCAGATAAGATGGGAAATTTGGGCCTTAGAAGGTGAAGATGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCAGATAAGATGGGAAATTTGGGCCTTAGAAGGTGAAGATGCAG  636

seq1  ATCAGGTGATAATGGAAGAAGCAGGAAAGGAATGAGAGAAGATGAGCAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGATAATGGAAGAAGCAGGAAAGGAATGAGAGAAGATGAGCAAG  686

seq1  ATAATGGAAGAGAGTTCCTGGGGTGAGCAGAGGTCTGCCTTAAGAAGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAAGAGAGTTCCTGGGGTGAGCAGAGGTCTGCCTTAAGAAGGTT  736

seq1  GAAGAGAGACATAAATTACTGAGACTTTAAAAAGAAACAAAAGGAGAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGACATAAATTACTGAGACTTTAAAAAGAAACAAAAGGAGAAAT  786

seq1  CCAACATGAGTTGACTTATTCACCTGGTGAATCATTCATAAACAAATGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGAGTTGACTTATTCACCTGGTGAATCATTCATAAACAAATGCT  836

seq1  TTTGTGCAGCCTTTTAGAAATGAGCATTCTCCATTTAGGAAACAAACCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAGCCTTTTAGAAATGAGCATTCTCCATTTAGGAAACAAACCCT  886

seq1  AGCAACCTGTTCTCTGCTGAAGATGAAAATAATAAATAAATAAATAAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTGTTCTCTGCTGAAGATGAAAATAATAAATAAATAAATAAATA  936

seq1  ACAAACCCTAGCAACCTGTTCTCTGCTGAAGATGAAAATAATAAATAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCTAGCAACCTGTTCTCTGCTGAAGATGAAAATAATAAATAAAT  986

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGGGAAAATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGGGAAAATAT  1036

seq1  TTGTATGGCTGAATCCAAACAATCAGTAACCCTCCAGTGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGCTGAATCCAAACAATCAGTAACCCTCCAGTGAATTC  1080


| Home | SequenceCutter | Blast | Download |