BAC Information

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BAC

Clone NameB6Ng01-286G09
ChromosomeX (Build37)
Map Location 7,567,264 - 7,665,400
singlet/doubletdoublet
Overlap geneGlod5, LOC668975, EG627737, EG632013, Suv39h1, Was
Upstream geneCcnb3, Akap4, Clcn5, Usp27x, 2010204K13Rik, LOC668973, Ppp1r3f, 4930524L23Rik, Foxp3, Ccdc22, Cacna1f, Syp, LOC632264, Lmo6, Plp2, Pdzx, Ppia-psx_14.1, Gpkow, LOC100043938, Wdr45, Praf2, Ccdc120, EG236622, Tcfe3, Gripap1, LOC100043939, Kcnd1, Otud5, Pim2, Slc35a2, Pqbp1, Timm17b, Pcsk1n, Eras, Hdac6, LOC668974, Gata1
Downstream geneEG627782, Wdr13, Rbm3, Tbc1d25, Ebp, Porcn, Ftsj1, Slc38a5, Ssxb10, Ssxb9, Ssxb1, Ssxb2, LOC546263, Ssxb6, Ssxb3, EG627853, EG627857, LOC668977, LOC631002, Ssx9, Ssxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286G09.bB6Ng01-286G09.g
ACCGA084605GA084606
length882667
definitionB6Ng01-286G09.b B6Ng01-286G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,567,264 - 7,568,143)(7,664,734 - 7,665,400)
sequence
gaattccagcactttggaagtagaggcagaaggatcaggagttcaaggct
gggagatggattagtgggtgagactacttgctgtacaagcaagagggcct
gagttcaaatctccacaccgacagatgtgcatgtctgtgtttgtctgtgc
acggctgtatcctccgtgctgcaagatggagacaggtggagcctcggagt
ctgttcaatcaatcagccgagccaaaatgtcagggagagatcctgtctca
aggcaagaaggcaattgagtgtcttcctccagcatgcgcatacatgcata
cagactcgtaagtgtgcatgctcgcatgtatacagcacacatacatatag
tacccatacacacctacaaacaacttcaaagatactaccatatagcatga
actacccgaagggaaacttacagatttacactgtaaattgtgtgtaactt
acggtgaagcagctatacctactactagcagcttggctttaaaatgacct
tccccccccttgaatgatgactgtatattaacttgcagtagcagagagaa
ccacttggagtacatggaatttttgtttgtttgcttttctttgtatttgt
tttgttgttttgatttttctttcttttcttttctttttttttttttttct
tcaaagaactgctctattgatactgtgaagctggtttggctgcccacgca
ggtggtcctgtagaaaatacctaggagctatggcagccccggctaggcac
agtcgtcactgccacagcggaaggacacaagaaaccctgatgagaatgca
gtctggtgccgggcgtggtggcacacgccttcaatcccagcactcgggag
gcagaggcaggcggatttcttggagttcgagg
gaattcaatcacaaaagtgggatgagagaatattctatccaaggaagatc
aaatgattaggtgtgaatgaatgaataacttaataagctttttagccaac
cagccagagaatggatgagtcagtacttgaatggtaaagacacatgaatt
ggtgactctttcagtgtttttttgggatccatccaccgctctgtaggcct
tgtttagacctctctcatctgtttcctccatgtccatcaaacatatccac
aaacttctccaatgagctttctatttcttgcccctgggcttcggctagta
agtgcgttggccagtggttcattcaccatttttccacaggcccatcaggt
ggtccactatctctaggacttgtgacggtcgacattcagaaccctgacat
cacaagttcacgataccgtgggctccctgcacctggccctggcccaactg
ataagaaacgctcagggaaaaagaagatcagcaaagctgatatcggagca
ccgagtggattcaagtgagaacttcttcccgtaggatcccaatgggtggg
aaagcatctgagctgagcagagggaaacacaggcagatgggtgaatggga
agaattaattaatgggctgaagaatgaacgcgcaggtgattggtaggagt
gggtaggtagatgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_7567264_7568143
seq2: B6Ng01-286G09.b_43_924

seq1  GAATTCCAGCACTTTGGAAGTAGAGGCAGAAGGATCAGGAGTTCAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTTTGGAAGTAGAGGCAGAAGGATCAGGAGTTCAAGGCT  50

seq1  GGGAGATGGATTAGTGGGTGAGACTACTTGCTGTACAAGCAAGAGGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGGATTAGTGGGTGAGACTACTTGCTGTACAAGCAAGAGGGCCT  100

seq1  GAGTTCAAATCTCCACACCGACAGATGTGCATGTCTGTGTTTGTCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAATCTCCACACCGACAGATGTGCATGTCTGTGTTTGTCTGTGC  150

seq1  ACGGCTGTATCCTCCGTGCTGCAAGATGGAGACAGGTGGAGCCTCGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGTATCCTCCGTGCTGCAAGATGGAGACAGGTGGAGCCTCGGAGT  200

seq1  CTGTTCAATCAATCAGCCGAGCCAAAATGTCAGGGAGAGATCCTGTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAATCAATCAGCCGAGCCAAAATGTCAGGGAGAGATCCTGTCTCA  250

seq1  AGGCAAGAAGGCAATTGAGTGTCTTCCTCCAGCATGCGCATACATGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAAGGCAATTGAGTGTCTTCCTCCAGCATGCGCATACATGCATA  300

seq1  CAGACTCGTAAGTGTGCATGCTCGCATGTATACAGCACACATACATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCGTAAGTGTGCATGCTCGCATGTATACAGCACACATACATATAG  350

seq1  TACCCATACACACCTACAAACAACTTCAAAGATACTACCATATAGCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATACACACCTACAAACAACTTCAAAGATACTACCATATAGCATGA  400

seq1  ACTACCCGAAGGGAAACTTACAGATTTACACTGTAAATTGTGTGTAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCGAAGGGAAACTTACAGATTTACACTGTAAATTGTGTGTAACTT  450

seq1  ACGGTGAAGCAGCTATACCTACTACTAGCAGCTTGGCTTTAAAATGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGAAGCAGCTATACCTACTACTAGCAGCTTGGCTTTAAAATGACCT  500

seq1  TCCCCCCCCTTGAATGATGACTGTATATTAACTTGCAGTAGCAGAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCTTGAATGATGACTGTATATTAACTTGCAGTAGCAGAGAGAA  550

seq1  CCACTTGGAGTACATGGAATTTTTGTTTGTTTGCTTTTCTTTGTATTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGAGTACATGGAATTTTTGTTTGTTTGCTTTTCTTTGTATTTGT  600

seq1  TTTGTTGTTTTGATTTTTCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTTTGATTTTTCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTCT  650

seq1  TCAAAGAACTGCTCTATTGATACTGTGAAGCTGGTTTGGCTGCCCACGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACTGCTCTATTGATACTGTGAAGCTGGTTTGGCTGCCCACGCA  700

seq1  GGTGGTCCTGTAGAAAATACCTAGGAGCTATGGCAGCCCCGGCTAGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCCTGTAGAAAATACCTAGGAGCTATGGCAGCCCCGGCTAGGCAC  750

seq1  AGTCGTCACTGCCACAGCGGAAGGACACAAGAAACCCTGATGAGAATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCACTGCCACAGCGGAAGGACACAAGAAACCCTGATGAGAATGCA  800

seq1  GTCTGGTGCCGGGCGTGGTGGCACACGCCTTCAATCCCAGCACTCGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTGCCGGGCGTGGTGGCACACGCCTTCAATCCCAGCACTCGGGAG  850

seq1  GCAGAGGCAGGCGGATTTCT--GAGTTCGAGG  880
      ||||||||||||||||||||  ||||||||||
seq2  GCAGAGGCAGGCGGATTTCTTGGAGTTCGAGG  882

seq1: chrX_7664734_7665400
seq2: B6Ng01-286G09.g_65_731 (reverse)

seq1  CACCCATCTACCTACCCACTCCTACCAATCACCTGCGCGTTCATTCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTACCTACCCACTCCTACCAATCACCTGCGCGTTCATTCTTCA  50

seq1  GCCCATTAATTAATTCTTCCCATTCACCCATCTGCCTGTGTTTCCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTAATTAATTCTTCCCATTCACCCATCTGCCTGTGTTTCCCTCTG  100

seq1  CTCAGCTCAGATGCTTTCCCACCCATTGGGATCCTACGGGAAGAAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCAGATGCTTTCCCACCCATTGGGATCCTACGGGAAGAAGTTCT  150

seq1  CACTTGAATCCACTCGGTGCTCCGATATCAGCTTTGCTGATCTTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAATCCACTCGGTGCTCCGATATCAGCTTTGCTGATCTTCTTTTT  200

seq1  CCCTGAGCGTTTCTTATCAGTTGGGCCAGGGCCAGGTGCAGGGAGCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCGTTTCTTATCAGTTGGGCCAGGGCCAGGTGCAGGGAGCCCAC  250

seq1  GGTATCGTGAACTTGTGATGTCAGGGTTCTGAATGTCGACCGTCACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCGTGAACTTGTGATGTCAGGGTTCTGAATGTCGACCGTCACAAGT  300

seq1  CCTAGAGATAGTGGACCACCTGATGGGCCTGTGGAAAAATGGTGAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGATAGTGGACCACCTGATGGGCCTGTGGAAAAATGGTGAATGAA  350

seq1  CCACTGGCCAACGCACTTACTAGCCGAAGCCCAGGGGCAAGAAATAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCCAACGCACTTACTAGCCGAAGCCCAGGGGCAAGAAATAGAAA  400

seq1  GCTCATTGGAGAAGTTTGTGGATATGTTTGATGGACATGGAGGAAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGGAGAAGTTTGTGGATATGTTTGATGGACATGGAGGAAACAGA  450

seq1  TGAGAGAGGTCTAAACAAGGCCTACAGAGCGGTGGATGGATCCCAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGGTCTAAACAAGGCCTACAGAGCGGTGGATGGATCCCAAAAAA  500

seq1  ACACTGAAAGAGTCACCAATTCATGTGTCTTTACCATTCAAGTACTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAGAGTCACCAATTCATGTGTCTTTACCATTCAAGTACTGACT  550

seq1  CATCCATTCTCTGGCTGGTTGGCTAAAAAGCTTATTAAGTTATTCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCTCTGGCTGGTTGGCTAAAAAGCTTATTAAGTTATTCATTCA  600

seq1  TTCACACCTAATCATTTGATCTTCCTTGGATAGAATATTCTCTCATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTAATCATTTGATCTTCCTTGGATAGAATATTCTCTCATCCCA  650

seq1  CTTTTGTGATTGAATTC  667
      |||||||||||||||||
seq2  CTTTTGTGATTGAATTC  667