BAC Information

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BAC

Clone NameB6Ng01-287A11
ChromosomeX (Build37)
Map Location 64,872,437 - 64,919,217
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk2, LOC666824, LOC627734, EG666828
Downstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194, EG236844, LOC385372, LOC627888, LOC434788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287A11.bB6Ng01-287A11.g
ACCGA085065GA085066
length1,0571,074
definitionB6Ng01-287A11.b B6Ng01-287A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,918,144 - 64,919,217)(64,872,437 - 64,873,495)
sequence
gaattcagcagaaaacatgtctgaggaaaggagattcatcacaaaaaaaa
aagaaaaacaaaaaataaccaacaacaacaacaaaagaattgtttcctct
attgtgggttttttttttttcctttccagatgactttgataataactctt
ttcgtgtctttgaagaattattggagttttgatggtgattgcattgaatc
tgtatatttggtaggatggtcttttcctgccttgcatgtcatttccttcc
tgtcctacagaagatccttctcttttcatgctttttgctttcctctactg
gtccatgcacagatcagcacaaggcttcactaggactcaggcacatagct
ctgtgcctttgtacttctgccaaaaatattactttagttgattcttcaaa
ctaatttttttgcttattaatttacttttatattttgtaaagcaggacac
tgaatctgtactttgatcagttggaaagtattctactaaagatttatacc
aacgtcacttctagctagccctctcttttttatttttagttccatttcta
tcactggatctcagtctttcttctgacctccatggatactgcatacatgt
gatgctcagacataaatgcaagcaaaacatccatacataaatgtaaaatg
aaatttaatatttcagatttcacatgtttatatcagaattttcattttcc
attaaaaacactttttgttacatttttacattttatttttgtgtattcac
acatgtgtatatctctgtgagcacacacatgctatagtgctcctgtaaag
gttgtaaaacatcatttgggaactggtttctgtttcctactatgtcagta
ctcaaattgtcagccttggaagcaggcccctttactcctagtgtaatttg
ctgaaatatctaacactcatatttttaaataatattacctcatgtttata
taaatgctactcgtggtatatatggcattttgatatagtaatataaacta
tcatcatacatatcaatatgctagtaatgtagaatgtaagaagatgtcag
ctattca
gaattcattttaagaaattacctgtgacttaactaagatgagtaagacat
acaacctgagctttcatatagcactctgcaaataattcctctatgcacac
tcttaatgaccctataattatctcattctttaaaatagtctgtagaaact
tactgaagggaaggctccttacttaattactgtaaatcccatcatttgct
tagtaggaaggaatttctgtttattgacaggttaaaatgatgttataata
agtgtatctgacaccttaatataatgaataatgtaaataaacttatcaat
agaaagaccagatttatgtataaaatgataaaaatgctgatcataatttc
atttattgattgatttatgtgtacatgtgtatagtgtgtgcctatgccct
agtatacctgaagaaaatgtggttgtaggaagttaaagaaactaaaaagg
gaaatgaggtaagggagaagcaagagggaggaaaagcaacagaaataata
tttgaaaaagctctaacaaaacctaatcaatttcaactatcaaaattcta
ttttgtgcctccatcttttctcaaattcatctatgtcatcagttttagat
gataaatgatattacccactaacaatagtatgggtaaagtgtattaactt
tcataactaagagcagacacattcaattataaaaacattagtagaaaaat
attgacctcttgaaagaaaataattttgccagcagattaactttggactt
gaaatggagtttttccctgtgtctccagcttgttcaaggtcctacaagca
ttgtcttcctaagcttccacaattgaaaggcttcatttcttcaagtaaaa
atttctttataattgtatgtgcttatatgagtctgctgtatacagcacta
gtcccatgagattacataacccttaatgatgttgtatctgtcttagtttg
tgaaagcattatattaatacatctctcttcataccttatagtatggtgtt
tatttagtgcatccttggtgtatgtgttttctttttcctctaagggttat
tatatatacgaatatatgatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_64918144_64919217
seq2: B6Ng01-287A11.b_43_1099 (reverse)

seq1  TGAATAGCTGAACAATCTTCTTTACATTCTAACAATTTACTTAAGCATAT  50
      |||||||||||   |||||| ||||||||| |||  |||||  |||||||
seq2  TGAATAGCTGA--CATCTTC-TTACATTCT-ACA--TTACT--AGCATAT  42

seq1  TGATATGTAATGATGATAGTTTATATTTACTTATATCAAAATGCCATATA  100
      |||||||| |||||||||||||||| |||| |||||||||||||||||||
seq2  TGATATGT-ATGATGATAGTTTATA-TTAC-TATATCAAAATGCCATATA  89

seq1  TACCACGGAGTAGCATTTATAATAAACATGAGGTAATTATTATTTAAAAA  150
      |||||| ||||||||||||| ||||||||||||||| |||||||| ||||
seq2  TACCAC-GAGTAGCATTTAT-ATAAACATGAGGTAA-TATTATTT-AAAA  135

seq1  ATATGAGTGTTAGAATATTTCAGCAAAATTACACTAGGAGTAAAGGGGCC  200
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  ATATGAGTGTTAG-ATATTTCAGC-AAATTACACTAGGAGTAAAGGGGCC  183

seq1  TGCTTCCAAGGCTGACAATTTGAGTACTGACATAGTAGGAAACAGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAAGGCTGACAATTTGAGTACTGACATAGTAGGAAACAGAAACC  233

seq1  AGTTCCCAAATGATGTTTTACAACCTTTACAGGAGCACTATAGCATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAAATGATGTTTTACAACCTTTACAGGAGCACTATAGCATGTGT  283

seq1  GTGCTCACAGAGATATACACATGTGTGAATACACAAAAATAAAATGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACAGAGATATACACATGTGTGAATACACAAAAATAAAATGTAAA  333

seq1  AATGTAACAAAAAGTGTTTTTAATGGAAAATGAAAATTCTGATATAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAACAAAAAGTGTTTTTAATGGAAAATGAAAATTCTGATATAAACA  383

seq1  TGTGAAATCTGAAATATTAAATTTCATTTTACATTTATGTATGGATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATCTGAAATATTAAATTTCATTTTACATTTATGTATGGATGTTT  433

seq1  TGCTTGCATTTATGTCTGAGCATCACATGTATGCAGTATCCATGGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATTTATGTCTGAGCATCACATGTATGCAGTATCCATGGAGGTC  483

seq1  AGAAGAAAGACTGAGATCCAGTGATAGAAATGGAACTAAAAATAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGACTGAGATCCAGTGATAGAAATGGAACTAAAAATAAAAAAG  533

seq1  AGAGGGCTAGCTAGAAGTGACGTTGGTATAAATCTTTAGTAGAATACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTAGCTAGAAGTGACGTTGGTATAAATCTTTAGTAGAATACTTT  583

seq1  CCAACTGATCAAAGTACAGATTCAGTGTCCTGCTTTACAAAATATAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGATCAAAGTACAGATTCAGTGTCCTGCTTTACAAAATATAAAAG  633

seq1  TAAATTAATAAGCAAAAAAATTAGTTTGAAGAATCAACTAAAGTAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATAAGCAAAAAAATTAGTTTGAAGAATCAACTAAAGTAATATT  683

seq1  TTTGGCAGAAGTACAAAGGCACAGAGCTATGTGCCTGAGTCCTAGTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGAAGTACAAAGGCACAGAGCTATGTGCCTGAGTCCTAGTGAAG  733

seq1  CCTTGTGCTGATCTGTGCATGGACCAGTAGAGGAAAGCAAAAAGCATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTGATCTGTGCATGGACCAGTAGAGGAAAGCAAAAAGCATGAA  783

seq1  AAGAGAAGGATCTTCTGTAGGACAGGAAGGAAATGACATGCAAGGCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGATCTTCTGTAGGACAGGAAGGAAATGACATGCAAGGCAGGA  833

seq1  AAAGACCATCCTACCAAATATACAGATTCAATGCAATCACCATCAAAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCATCCTACCAAATATACAGATTCAATGCAATCACCATCAAAACT  883

seq1  CCAATAATTCTTCAAAGACACGAAAAGAGTTATTATCAAAGTCATCTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAATTCTTCAAAGACACGAAAAGAGTTATTATCAAAGTCATCTGGA  933

seq1  AAGGAAAAAAAAAAAACCCACAATAGAGGAAACAATTCTTTTGTTGTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAAAAAAACCCACAATAGAGGAAACAATTCTTTTGTTGTTGT  983

seq1  TGTTGGTTATTTTTTGTTTTTCTTTTTTTTTTGTGATGAATCTCCTTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTATTTTTTGTTTTTCTTTTTTTTTTGTGATGAATCTCCTTTCC  1033

seq1  TCAGACATGTTTTCTGCTGAATTC  1074
      ||||||||||||||||||||||||
seq2  TCAGACATGTTTTCTGCTGAATTC  1057

seq1: chrX_64872437_64873495
seq2: B6Ng01-287A11.g_65_1138

seq1  GAATTCATTTTAAGAAATTACCTGTGACTTAACTAAGATGAGTAAGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTAAGAAATTACCTGTGACTTAACTAAGATGAGTAAGACAT  50

seq1  ACAACCTGAGCTTTCATATAGCACTCTGCAAATAATTCCTCTATGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTGAGCTTTCATATAGCACTCTGCAAATAATTCCTCTATGCACAC  100

seq1  TCTTAATGACCCTATAATTATCTCATTCTTTAAAATAGTCTGTAGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGACCCTATAATTATCTCATTCTTTAAAATAGTCTGTAGAAACT  150

seq1  TACTGAAGGGAAGGCTCCTTACTTAATTACTGTAAATCCCATCATTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGGGAAGGCTCCTTACTTAATTACTGTAAATCCCATCATTTGCT  200

seq1  TAGTAGGAAGGAATTTCTGTTTATTGACAGGTTAAAATGATGTTATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGAAGGAATTTCTGTTTATTGACAGGTTAAAATGATGTTATAATA  250

seq1  AGTGTATCTGACACCTTAATATAATGAATAATGTAAATAAACTTATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCTGACACCTTAATATAATGAATAATGTAAATAAACTTATCAAT  300

seq1  AGAAAGACCAGATTTATGTATAAAATGATAAAAATGCTGATCATAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACCAGATTTATGTATAAAATGATAAAAATGCTGATCATAATTTC  350

seq1  ATTTATTGATTGATTTATGTGTACATGTGTATAGTGTGTGCCTATGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGATTGATTTATGTGTACATGTGTATAGTGTGTGCCTATGCCCT  400

seq1  AGTATACCTGAAGAAAATGTGGTTGTAGGAAGTTAAAGAAACTAAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACCTGAAGAAAATGTGGTTGTAGGAAGTTAAAGAAACTAAAAAGG  450

seq1  GAAATGAGGTAAGGGAGAAGCAAGAGGGAGGAAAAGCAACAGAAATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGGTAAGGGAGAAGCAAGAGGGAGGAAAAGCAACAGAAATAATA  500

seq1  TTTGAAAAAGCTCTAACAAAACCTAATCAATTTCAACTATCAAAATTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAGCTCTAACAAAACCTAATCAATTTCAACTATCAAAATTCTA  550

seq1  TTTTGTGCCTCCATCTTTTCTCAAATTCATCTATGTCATCAGTTTTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCCTCCATCTTTTCTCAAATTCATCTATGTCATCAGTTTTAGAT  600

seq1  GATAAATGATATTACCCACTAACAATAGTATGGGTAAAGTGTATTAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGATATTACCCACTAACAATAGTATGGGTAAAGTGTATTAACTT  650

seq1  TCATAACTAAGAGCAGACACATTCAATTATAAAAACATTAGTAGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTAAGAGCAGACACATTCAATTATAAAAACATTAGTAGAAAAAT  700

seq1  ATTGACCTCTTGAAAGAAAATAATTTTGCCAGCAGATTAACTTTGGACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTCTTGAAAGAAAATAATTTTGCCAGCAGATTAACTTTGGACTT  750

seq1  GAAATGGAGTTTTTCCCTGTGTCTCCAGCTTGTTCAAGGTCCTACAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAGTTTTTCCCTGTGTCTCCAGCTTGTTCAAGGTCCTACAAGCA  800

seq1  TTGTCTTCCTAAGCTTCCACAATTGAAAGGCTTCATTTCTTCAAGTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCTAAGCTTCCACAATTGAAAGGCTTCATTTCTTCAAGTAAAA  850

seq1  ATTTCTTTATAATTGTATGTGCTTATATGAGTCTGCTGTATACAGCACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTATAATTGTATGTGCTTATATGAGTCTGCTGTATACAGCACTA  900

seq1  GTCCCATGAGATTACATAACC--TTATGATGTTGTATCTGTCTTAGTTTG  948
      |||||||||||||||||||||  | |||||||||||||||||||||||||
seq2  GTCCCATGAGATTACATAACCCTTAATGATGTTGTATCTGTCTTAGTTTG  950

seq1  TGAAAGCA-TATATTAATACATCTCTCTTCATA-CTTATAGTAT-GTGTT  995
      |||||||| |||||||||||||||||||||||| |||||||||| |||||
seq2  TGAAAGCATTATATTAATACATCTCTCTTCATACCTTATAGTATGGTGTT  1000

seq1  TATTTAGTGCATCCTT-GTGTATGTG-TTTCTTTT--CTCTAAGG--TA-  1038
      |||||||||||||||| ||||||||| ||||||||  ||||||||  || 
seq2  TATTTAGTGCATCCTTGGTGTATGTGTTTTCTTTTTCCTCTAAGGGTTAT  1050

seq1  TATATATAC--ATATAT-ATATAT  1059
      |||||||||  |||||| ||||||
seq2  TATATATACGAATATATGATATAT  1074