BAC Information

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BAC

Clone NameB6Ng01-287I07
ChromosomeX (Build37)
Map Location 111,200,131 - 111,333,942
singlet/doubletdoublet
Overlap geneEG634881
Upstream geneChm, EG664918, Dach2, LOC237016, EG664945
Downstream geneLOC100039201, Klhl4, Gm1866, EG546361, EG237009, 4930524E20Rik, LOC237008, EG664969, EG546362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287I07.bB6Ng01-287I07.g
ACCGA085420GA085421
length9561,042
definitionB6Ng01-287I07.b B6Ng01-287I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,200,131 - 111,201,029)(111,332,910 - 111,333,942)
sequence
gaattctttgttcagttctgagtcccatcatttaagggggttatttgatt
ttctggagtccaccgtcttgagttctttatatatattggatattagtcct
caatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgaagaagctttgcagtttca
tgaggtcccatttgtcaatccttgatcttacagcacaagccattgctgta
agatcgctggaattttttccctgttcccatatcttcgagacttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttccttg
atccacttagatttgaccttagtacaaggagagaggaatgggtcaattca
cattcttctacatgataacaaccagttgtaccagcaccatttgttgaaaa
tgctgtctttcttccaccggatggttttagctcccttgttgaagatcaag
tgaccttaggtgtgtgggttcatttctgggtctttaattctattccattg
gtctacttattatgttcgtgtggcccccaccccataattctttccagtgg
tatccacataaacagcaatcgagcaagtgttccaaaaaatgaatgacatc
tagaccttagtcactcttcacttcctgtctgcatcctgggatagtcccat
ggatatgaatagattattctgatattacagtgcaatatgtgatattataa
aatgagtggaaaggcacacatatacatgatagataccccttgtacttttc
ctataacataattttacacttttcatggattataaatacatatgattgat
tctgagttaacaataatgtatgattattccattaagcaacataaaaaagc
acttctccttgtagtatttactaggtctacattttaattctgcatttatt
tcatgc
gaattctttaggagttatgatttttggtgtagtctatatttatcttctaa
tgataaaatgaggaactatattggatgcctatcttgacctatgacagaga
ttccttttgggtcaaaagtggtctggaccccaatttttcttaacaaatct
tttcctaatagagggtaggagcattcaggcatgactagaaaagagtagca
tactcagtccattctgagatctactaatcttcgggaagtctatgtatgct
gattcatgcctatagttccctgtacttcctatttgataattgtccatgac
tttatctgaggacttaatgttaggctactgtatccactaaaattttgatg
gttttcccctccaatctaatggttaccctgggtttggagaaggactcgaa
acccagtgtctcataatcacttaattcttctaattctagcacttttgttc
aacccctttctgattttcaagagggttgtttggggtaattcttgatctaa
tgtcatattttcttattaaatttattattctatatttcagtctttgcccc
cccccccagtccaccttatcagttcctcatcccattcctcatctacactg
tttcctattatttttacaatatgaatattggttcttttggagtccagatt
tgtcccttgtccatagtttcttacctttgtcacccactagatttcaaaat
tgcagtttgtttctctgccttagtgcttgttatggatactagcaagattt
tggccaagttcagtgttgggaattggagtaggcctgtttgtcctcaaatg
aacacttggtaatatatatactttaccctcaaccacccaacataacttgt
agggactttttctgcatcctatcctactctctgtaatttatgctttatgt
ctgtatttacttggttgacaaaaactatcatcactgctaaattgttcctc
tgatgatttcctggtcaagcgggtataggtctctggaatgtagtcattaa
ttctttctagaaaagctatagggggactccctatattctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_111200131_111201029
seq2: B6Ng01-287I07.b_103_997

seq1  ACCGTCTTGAGTTCTTTATATATATTGGATATTAGTCCTCAATCTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTTGAGTTCTTTATATATATTGGATATTAGTCCTCAATCTGATTT  50

seq1  AAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT  100

seq1  TGACGGTGTCTTTTGCCTTGAAGAAGCTTTGCAGTTTCATGAGGTCCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTGTCTTTTGCCTTGAAGAAGCTTTGCAGTTTCATGAGGTCCCAT  150

seq1  TTGTCAATCCTTGATCTTACAGCACAAGCCATTGCTGTAAGATCGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATCCTTGATCTTACAGCACAAGCCATTGCTGTAAGATCGCTGGA  200

seq1  ATTTTTTCCCTGTTCCCATATCTTCGAGACTTTTCCCCACTTTCTCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCCTGTTCCCATATCTTCGAGACTTTTCCCCACTTTCTCCTCT  250

seq1  ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA  300

seq1  TTTGACCTTAGTACAAGGAGAGAGGAATGGGTCAATTCACATTCTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTTAGTACAAGGAGAGAGGAATGGGTCAATTCACATTCTTCTAC  350

seq1  ATGATAACAACCAGTTGTACCAGCACCATTTGTTGAAAATGCTGTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACAACCAGTTGTACCAGCACCATTTGTTGAAAATGCTGTCTTTC  400

seq1  TTCCACCGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGACCTTAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGACCTTAGGT  450

seq1  GTGTGGGTTCATTTCTGGGTCTTTAATTCTATTCCATTGGTCTACTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTTCATTTCTGGGTCTTTAATTCTATTCCATTGGTCTACTTATT  500

seq1  ATGTTCGTGTGGCCCCCACCCCATAATTCTTTCAAGTGGTTTCCACATAA  550
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ATGTTCGTGTGGCCCCCACCCCATAATTCTTTCCAGTGGTATCCACATAA  550

seq1  ACAGCAATCGAGCAAGTGTTCCAAAAAATGAATGACATCAAGACCTTAGT  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGCAATCGAGCAAGTGTTCCAAAAAATGAATGACATCTAGACCTTAGT  600

seq1  CACTCTTCACTTCCTGTCTGCATCCTGGGATAGTCCCATGGATATGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCACTTCCTGTCTGCATCCTGGGATAGTCCCATGGATATGAATA  650

seq1  GATTACTTCTGATATTACAGTGCAATATTTGATATTAGAAAATGAGTGGA  700
      ||||| |||||||||||||||||||||| |||||||| ||||||||||||
seq2  GATTA-TTCTGATATTACAGTGCAATATGTGATATTATAAAATGAGTGGA  699

seq1  AAGGCACACAT-TAGATGATAGATACCCCTTGTACTTTTCCTATAACATA  749
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  AAGGCACACATATACATGATAGATACCCCTTGTACTTTTCCTATAACATA  749

seq1  ATTTTACACTTTTCATGGATTATAAATACTTATGATTAATTCTGAGTTAA  799
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  ATTTTACACTTTTCATGGATTATAAATACATATGATTGATTCTGAGTTAA  799

seq1  CAATAATGTATTAGTATTCCATTAAGCAAAAGAAAAAAAGCACTTCTCCT  849
      ||||||||||| | ||||||||||||||| |  |||||||||||||||||
seq2  CAATAATGTATGATTATTCCATTAAGCAACA-TAAAAAAGCACTTCTCCT  848

seq1  TGTAGTTATTTAACTAGGTCTACATTTTAATTCTGCATTTTATTTCATGC  899
      ||||| ||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TGTAG-TATTT-ACTAGGTCTACATTTTAATTCTGCA-TTTATTTCATGC  895

seq1: chrX_111332910_111333942
seq2: B6Ng01-287I07.g_69_1110 (reverse)

seq1  AAGAGGATATATGGAGT-CCCCTATAGCTTTTCTAGAAAGAATT-ATGAC  48
      ||||| ||||| ||||| |||||||||||||||||||||||||| |||||
seq2  AAGAGAATATAGGGAGTCCCCCTATAGCTTTTCTAGAAAGAATTAATGAC  50

seq1  TACATTCC--AGACCTATACCCCGCTGGACCAGG-AATCATCAGA-GAAC  94
      ||||||||  ||||||||| |||||| ||||||| |||||||||| ||||
seq2  TACATTCCAGAGACCTATA-CCCGCTTGACCAGGAAATCATCAGAGGAAC  99

seq1  AATTTAGCAGTGATGATAGTTTTTGTCAACCAAGTAATTACAGACATAAA  144
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATTTAGCAGTGATGATAGTTTTTGTCAACCAAGTAAATACAGACATAAA  149

seq1  GCATAAATTACAGAGAGTA-GATAGGATGCAGAAAAAGTCCCTACAAGTT  193
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCATAAATTACAGAGAGTAGGATAGGATGCAGAAAAAGTCCCTACAAGTT  199

seq1  ATGTT-GGTGGTTGAGGGTAAAGTATATATATTACCAAGTGTTCA-TTGA  241
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGTTGGGTGGTTGAGGGTAAAGTATATATATTACCAAGTGTTCATTTGA  249

seq1  GGACAAACAGGCCTACTCCAATTCCCAACACTGAACTTGGCCAAAATCTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAACAGGCCTACTCCAATTCCCAACACTGAACTTGGCCAAAATCTT  299

seq1  GCTAGTATCCATAACAAGCACTAAGGCAGAGAAAC-AACTGCAATTTTGA  340
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTAGTATCCATAACAAGCACTAAGGCAGAGAAACAAACTGCAATTTTGA  349

seq1  AATCTAGTGGGTGACAAAGGTAAGAAACTATGGACAAGGGACAAATCTGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGTGGGTGACAAAGGTAAGAAACTATGGACAAGGGACAAATCTGG  399

seq1  ACTCCAAAAGAACCAATATTCATATTGTAAAAATAATAGGAAACAGTGTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAAAGAACCAATATTCATATTGTAAAAATAATAGGAAACAGTGTA  449

seq1  GATGAGGAATGGGATGAGGAACTGATAAGGTGGACTGGGGGGGGGGGCAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGAATGGGATGAGGAACTGATAAGGTGGACTGGGGGGGGGGGCAA  499

seq1  AGACTGAAATATAGAATAATAAATTTAATAAGAAAATATGACATTAGATC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAATATAGAATAATAAATTTAATAAGAAAATATGACATTAGATC  549

seq1  AAGAATTACCCCAAACAACCCTCTTGAAAATCAGAAAGGGGTTGAACAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTACCCCAAACAACCCTCTTGAAAATCAGAAAGGGGTTGAACAAA  599

seq1  AGTGCTAGAATTAGAAGAATTAAGTGATTATGAGACACTGGGTTTCGAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAGAATTAGAAGAATTAAGTGATTATGAGACACTGGGTTTCGAGT  649

seq1  CCTTCTCCAAACCCAGGGTAACCATTAGATTGGAGGGGAAAACCATCAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCAAACCCAGGGTAACCATTAGATTGGAGGGGAAAACCATCAAA  699

seq1  ATTTTAGTGGATACAGTAGCCTAACATTAAGTCCTCAGATAAAGTCATGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGGATACAGTAGCCTAACATTAAGTCCTCAGATAAAGTCATGG  749

seq1  ACAATTATCAAATAGGAAGTACAGGGAACTATAGGCATGAATCAGCATAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATCAAATAGGAAGTACAGGGAACTATAGGCATGAATCAGCATAC  799

seq1  ATAGACTTCCCGAAGATTAGTAGATCTCAGAATGGACTGAGTATGCTACT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTCCCGAAGATTAGTAGATCTCAGAATGGACTGAGTATGCTACT  849

seq1  CTTTTCTAGTCATGCCTGAATGCTCCTACCCTCTATTAGGAAAAGATTTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAGTCATGCCTGAATGCTCCTACCCTCTATTAGGAAAAGATTTG  899

seq1  TTAAGAAAAATTGGGGTCCAGACCACTTTTGACCCAAAAGGAATCTCTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAATTGGGGTCCAGACCACTTTTGACCCAAAAGGAATCTCTGT  949

seq1  CATAGGTCAAGATAGGCATCCAATATAGTTCCTCATTTTATCATTAGAAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTCAAGATAGGCATCCAATATAGTTCCTCATTTTATCATTAGAAG  999

seq1  ATAAATATAGACTACACCAAAAATCATAACTCCTAAAGAATTC  1033
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAGACTACACCAAAAATCATAACTCCTAAAGAATTC  1042