BAC Information

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BAC

Clone NameB6Ng01-288N03
ChromosomeX (Build37)
Map Location 164,425,158 - 164,585,010
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneLOC667791, EG667794, LOC100040850, LOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288N03.bB6Ng01-288N03.g
ACCGA086386GA086387
length745984
definitionB6Ng01-288N03.b B6Ng01-288N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,425,158 - 164,425,901)(164,584,054 - 164,585,010)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggcaggtggatttctagagagcatgttc
cagacagcctggcctcatcagtgagcttcaggctcagtaagctagtgtat
cttacaaagtaagaggaagcctttctttctgcctgttgctctagctgaag
aagcattactgaaggcttccaactctccgtcttctttcaagggagtgggt
ggagctataaatgcaaggccacataagttagatggaagagttgtggatcc
caaaaaagctgtgtcaagagaaaactctcaaacatcacatgcctacttaa
ctatgacaaagatctttgttgatggttctaaaacactaacattccaggtc
acttgcaaggttattttgaacagcatggggaaactgaagtcaatgaagtc
atgactgacagaggcagtggacaaggggggggttctttgttttgttacca
ttgaagatccatgattacaaggataaggctgacattcagcaagacctttc
tatgaatggctacaactgtggagtgagaaaagccctgtcaaagcaagaga
tagctagtgcttcatccagtccaggaggccaaagcatttctataaattct
ggaggtggttgtggggacaatgataattttgggtggaggatgaaa
gaattccagggccaagaagtgggagtgggtgggcagggaagcagggcagg
gggatatagggaacttttggggtagcatttgaaatgtatacaaagaaaat
atctaattaaaaaaaaaaagacaagagaaagacaaggagtacaagaattg
gaaatgtgaaacatggtggagttttgtactagtaaaccaagcaagggtta
ttgtggatcttgtcattttataagagttgtgtagtgtgttatatttctca
gtctactccaaaatttcctccataaacttgttaaaaaagtacctatctcc
tgatattggatcatagaattagatctctgctatatgcatcaaaattacca
aatatggggagtagatagatgtctcagcagcgaagttcccttgctgttct
tgaagaggacccatgttcttttctcagcacccacatgatggcttatagcc
attagtatgtatacccacatatacatacataccagaaaagtggacataca
cataagataatgaaataaaaggaaaaattaaaataatatgaaatatagcc
ttgaagtgggaatggatgagaaaagtaaaaagtctgtgtaagacatgcta
tttttttccattctgttttattttattttgttctgttttgctcagatcat
ctgcactcagttactttaccagtggacttgagtagccatctctatctggc
aagaaatttgattgaggttgaaaatgcccgagacttttaatttataatat
atgagcacatgacaaggcatcttgatttagttaatgctttttttacttct
gctcatgggaaatcatgtatatattaataccacacctaactttatggtaa
cagtattgattttgtttgccccaaaagatcatcctagttaatcctccctc
ctgccctactactgaagacctactgtggagtcgaacctgtcttttgcttc
ccaccttgtaagtaacctcctccacatggtggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164425158_164425901
seq2: B6Ng01-288N03.b_50_794

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCAGGTGGATTTCTAGAGAGCATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCAGGTGGATTTCTAGAGAGCATGTTC  150

seq1  CAGACAGCCTGGCCTCATCAGTGAGCTTCAGGCTCAGTAAGCTAGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCCTGGCCTCATCAGTGAGCTTCAGGCTCAGTAAGCTAGTGTAT  200

seq1  CTTACAAAGTAAGAGGAAGCCTTTCTTTCTGCCTGTTGCTCTAGCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAGTAAGAGGAAGCCTTTCTTTCTGCCTGTTGCTCTAGCTGAAG  250

seq1  AAGCATTACTGAAGGCTTCCAACTCTCCGTCTTCTTTCAAGGGAGTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTACTGAAGGCTTCCAACTCTCCGTCTTCTTTCAAGGGAGTGGGT  300

seq1  GGAGCTATAAATGCAAGGCCACATAAGTTAGATGGAAGAGTTGTGGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATAAATGCAAGGCCACATAAGTTAGATGGAAGAGTTGTGGATCC  350

seq1  CAAAAAAGCTGTGTCAAGAGAAAACTCTCAAACATCACATGCCTACTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGCTGTGTCAAGAGAAAACTCTCAAACATCACATGCCTACTTAA  400

seq1  CTATGACAAAGATCTTTGTTGATGGTTCTAAAACACTAACATTCCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAAAGATCTTTGTTGATGGTTCTAAAACACTAACATTCCAGGTC  450

seq1  ACTTGCAAGGTTATTTTGAACAGCATGGGGAAACTGAAGTCAATGAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAGGTTATTTTGAACAGCATGGGGAAACTGAAGTCAATGAAGTC  500

seq1  ATGACTGACAGAGGCAGTGGACAAGGGGGGGGTTCTTTGTTTTGTTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGACAGAGGCAGTGGACAAGGGGGGGGTTCTTTGTTTTGTTACCA  550

seq1  TTGAAGATCCATGATTACAAGGATAAGGCTGACATTCAGCAAGACCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATCCATGATTACAAGGATAAGGCTGACATTCAGCAAGACCTTTC  600

seq1  TATGAATGGCTACAACTGTGGAGTGAGAAAAGCCCTGTCAAAGCAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGGCTACAACTGTGGAGTGAGAAAAGCCCTGTCAAAGCAAGAGA  650

seq1  TAGCTAGTGCTTCATCCAGTCCAGGAGGCCAAAGCATTTCTATAAATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTGCTTCATCCAGTCCAGGAGGCCAAAGCATTTCTATAAATTCT  700

seq1  GGAGGTGGTTGTGGGGACAATGATAA-TTTGGGTGGAGGAAGAAA  744
      |||||||||||||||||||||||||| ||||||||||||| ||||
seq2  GGAGGTGGTTGTGGGGACAATGATAATTTTGGGTGGAGGATGAAA  745

seq1: chrX_164584054_164585010
seq2: B6Ng01-288N03.g_71_1054 (reverse)

seq1  GACCACC-TGT-GAGGA-GTTAC-TACAAAGTGGGAAGCAATGCA---GT  43
      ||||||| ||| ||||| ||||| ||||| |||||||||||   |   ||
seq2  GACCACCATGTGGAGGAGGTTACTTACAAGGTGGGAAGCAAAAGACAGGT  50

seq1  TCAGCT-CTCAGTAGGTC-TCAGTAGT-TGGCAGGA-GGAGGTTTACTTA  89
      ||  || | ||||||||| ||||||||  ||||||| ||||| |||  ||
seq2  TCGACTCCACAGTAGGTCTTCAGTAGTAGGGCAGGAGGGAGGATTAACTA  100

seq1  TGTTG-TCTTTTGGG--CAACCATATC-ATACTGTT-CCCTAA--GTAGG  132
       | || |||||||||   ||| | ||| |||||||| || |||   ||||
seq2  GGATGATCTTTTGGGGCAAACAAAATCAATACTGTTACCATAAAGTTAGG  150

seq1  TGTGGTATTAATATATACATGA-TTCCCATGAGCAGAAGT-AAAAAAGCA  180
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TGTGGTATTAATATATACATGATTTCCCATGAGCAGAAGTAAAAAAAGCA  200

seq1  TTAACTAACTC-AGATGCTTTGTC-TGTGCTCATATATTATAAATT-AAA  227
      |||||||| || |||||| ||||| ||||||||||||||||||||| |||
seq2  TTAACTAAATCAAGATGCCTTGTCATGTGCTCATATATTATAAATTAAAA  250

seq1  GTCTCGGGCATTTTCAACC-CAATCAAATTTCTTGCCAGATAGAGATGGC  276
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCTCGGGCATTTTCAACCTCAATCAAATTTCTTGCCAGATAGAGATGGC  300

seq1  TACTC-AGTCCACTGGT-AAGTAACTGAGTGCAGATGATCTGAGCAAAAC  324
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACTCAAGTCCACTGGTAAAGTAACTGAGTGCAGATGATCTGAGCAAAAC  350

seq1  AGAACAAAATAAAATAAAACAGAATGG-AAAAAATAGCATGTCTTACACA  373
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAACAAAATAAAATAAAACAGAATGGAAAAAAATAGCATGTCTTACACA  400

seq1  GACTTTTTACTTTTCTCATCCATTCCCACTTCAAGGCTATATTTCATATT  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTACTTTTCTCATCCATTCCCACTTCAAGGCTATATTTCATATT  450

seq1  ATTTTAATTTTTCCTTTTATTTCATTATCTTATGTGTATGTCCACTTTTC  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTTTCCTTTTATTTCATTATCTTATGTGTATGTCCACTTTTC  500

seq1  TGGTATGTATGTATATGTGGGTATACATACTAATGGCTATAAGCCATCAT  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTATGTATATGTGGGTATACATACTAATGGCTATAAGCCATCAT  550

seq1  GTGGGTGCTGAGAAAAGAACATGGGTCCTCTTCAAGAACAGCAAGGGAAC  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCTGAGAAAAGAACATGGGTCCTCTTCAAGAACAGCAAGGGAAC  600

seq1  TTCGCTGCTGAGACATCTATCTACTCCCCATATTTGGTAATTTTGATGCA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTGCTGAGACATCTATCTACTCCCCATATTTGGTAATTTTGATGCA  650

seq1  TATAGCAGAGATCTAATTCTATGATCCAATATCAGGAGATAGGTACTTTT  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGAGATCTAATTCTATGATCCAATATCAGGAGATAGGTACTTTT  700

seq1  TTAACAAGTTTATGGAGGAAATTTTGGAGTAGACTGAGAAATATAACACA  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGTTTATGGAGGAAATTTTGGAGTAGACTGAGAAATATAACACA  750

seq1  CTACACAACTCTTATAAAATGACAAGATCCACAATAACCCTTGCTTGGTT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAACTCTTATAAAATGACAAGATCCACAATAACCCTTGCTTGGTT  800

seq1  TACTAGTACAAAACTCCACCATGTTTCACATTTCCAATTCTTGTACTCCT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTACAAAACTCCACCATGTTTCACATTTCCAATTCTTGTACTCCT  850

seq1  TGTCTTTCTCTTGTCTTTTTTTTTTTAATTAGATATTTTCTTTGTATACA  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTCTTGTCTTTTTTTTTTTAATTAGATATTTTCTTTGTATACA  900

seq1  TTTCAAATGCTACCCCAAAAGTTCCCTATATCCCCCTGCCCTGCTTCCCT  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGCTACCCCAAAAGTTCCCTATATCCCCCTGCCCTGCTTCCCT  950

seq1  GCCCACCCACTCCCACTTCTTGGCCCTGGAATTC  957
      ||||||||||||||||||||||||||||||||||
seq2  GCCCACCCACTCCCACTTCTTGGCCCTGGAATTC  984