BAC Information

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BAC

Clone NameB6Ng01-288P19
ChromosomeX (Build37)
Map Location 125,271,999 - 125,429,684
singlet/doubletdoublet
Overlap geneLOC100040550
Upstream geneLOC385523, LOC100040516, Mdm4-ps, EG237030, LOC100040538
Downstream geneLOC100040562, LOC100040570, LOC669120, Diap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288P19.bB6Ng01-288P19.g
ACCGA086508GA086509
length1,0991,028
definitionB6Ng01-288P19.b B6Ng01-288P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,271,999 - 125,273,091)(125,428,662 - 125,429,684)
sequence
gaattcacatgtaatatagaatacaagtaaagcaagaaaagaccaaactc
ataattatatcaataattattgtttgtttattatgtgtaagtctctgttc
tatgttcagtacatgtattttcttattttcttcatgtttaagacatgaaa
aatggaagcaccaatcaatcaaattactctcccaaggacaaaaaaaacta
gacaccaacacccatacaagcattctgagaactaatattcagtagttata
tgtttatttggtagatcaagtaagcagtaagatacattatctaatttatt
cttgctaataagtttatgactggcattattgttttcatttttaagttgaa
gaaatggatattcaggtattaagaggactgatacaggctgacttcaagaa
agatttcaaactggcagttcaggagactaggcctaagtttctgtttccca
gaacctggcaagtcaattacaggaaaagcctcaggctatggcagccaatc
aaaagcaggcccaccatcagaagctgcctggtcacctggcctgaggcaag
tgcagtgagtcagcaacagtttccagatttcccaacagttcccatcccac
tccaggagcaaaggttctggaatgtcctcaaaggcaatcatatccctaga
gacctagccaagcaatcaagataaaggtaacctagtcttcccaggaattt
ccttaatctgcttcaaattgggtctgctcgctcacatgggcatctctatc
attgtaaatggtagaccctcccatgctggacttctgcagaagaaacagtt
ctttgcttttgtatactatttgagtctggggtatcattctttggtgaatc
atagacatttgggtgctcctcaaggattctctagagaaccccttatccaa
atagtgcagtgtttttttttttttccattggtacttccaagtgccctctc
agttgtctcttgtcttatgcgtctctttttctagtttaagtcctgagacc
aagagaacacaaagcagatgtgtatttggtcattcagccagcagctatta
aaaagaaggctcccaactccctacaagaagcagagaacttgctagttct

gaattccaggacagccaaggctacatagagaaaccctgtctcaaaaacaa
aacaaaacaaagcagaacagaacaaaacaagagaaagaaactccatcagc
ttggcatggtggcataggcatttactcttagcactcaaagcagagacagt
tagatcactatgaggctacatggcgagacactgtttcaaaaaagaaagaa
accagtgtgtgatattgaaaacttatttactgcactgaggatgtgggaaa
gtgtgtattcttgatatttgttagccagctagcctgcataccctattggt
atgtcacaggccagtgagaaactctgctgatactttttttgctttgtttt
gtttttgttcttttgattttaagatttttaaggtgggtagcacctgagaa
tctaaagaaaagttgtcctttgctacacaaacacacatacacacacgtgc
acgcgcgcacacacacacacacacacacacacacacacgtgtatatacat
ccatccttcatgcatccaaccagtctcacaagaatacatgcatatacaca
aacatacacacatagactataaaatgctaatatgcattttgatgccttta
catatgcatacacctatgtactcttcactaaaagaatgaatgtacccaca
agtcactacaatttttttttagtgtagagtacccccttttgtgttgctgt
tgtgaaatattaaactttggacacttcataaagcagggattcatgtggca
ctgggtttaggaaaaaatagattgaggttgcataactttattttgttgct
ctcttctaaggttctccaaatttttaattttatctattcttttagaatta
aatatatatatatatatatatatatatatatatatatatatatatattcc
aattataaacatatccactgctatacctctttaccattattggatgtatg
attcctgatctcctatcctagttttcaatttccaggtttcatcttccttt
gtgatgttctcttttgtttctttatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_125271999_125273091
seq2: B6Ng01-288P19.b_51_1149

seq1  GAATTCACATGTAATATAGAATACAAGTAAAGCAAGAAAAGACCAAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTAATATAGAATACAAGTAAAGCAAGAAAAGACCAAACTC  50

seq1  ATAATTATATCAATAATTATTGTTTGTTTATTATGTGTAAGTCTCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATATCAATAATTATTGTTTGTTTATTATGTGTAAGTCTCTGTTC  100

seq1  TATGTTCAGTACATGTATTTTCTTATTTTCTTCATGTTTAAGACATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGTACATGTATTTTCTTATTTTCTTCATGTTTAAGACATGAAA  150

seq1  AATGGAAGCACCAATCAATCAAATTACTCTCCCAAGGACAAAAAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGCACCAATCAATCAAATTACTCTCCCAAGGACAAAAAAAACTA  200

seq1  GACACCAACACCCATACAAGCATTCTGAGAACTAATATTCAGTAGTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAACACCCATACAAGCATTCTGAGAACTAATATTCAGTAGTTATA  250

seq1  TGTTTATTTGGTAGATCAAGTAAGCAGTAAGATACATTATCTAATTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTGGTAGATCAAGTAAGCAGTAAGATACATTATCTAATTTATT  300

seq1  CTTGCTAATAAGTTTATGACTGGCATTATTGTTTTCATTTTTAAGTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAATAAGTTTATGACTGGCATTATTGTTTTCATTTTTAAGTTGAA  350

seq1  GAAATGGATATTCAGGTATTAAGAGGACTGATACAGGCTGACTTCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGATATTCAGGTATTAAGAGGACTGATACAGGCTGACTTCAAGAA  400

seq1  AGATTTCAAACTGGCAGTTCAGGAGACTAGGCCTAAGTTTCTGTTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAAACTGGCAGTTCAGGAGACTAGGCCTAAGTTTCTGTTTCCCA  450

seq1  GAACCTGGCAAGTCAATTACAGGAAAAGCCTCAGGCTATGGCAGCCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGCAAGTCAATTACAGGAAAAGCCTCAGGCTATGGCAGCCAATC  500

seq1  AAAAGCAGGCCCACCATCAGAAGCTGCCTGGTCACCTGGCCTGAGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGGCCCACCATCAGAAGCTGCCTGGTCACCTGGCCTGAGGCAAG  550

seq1  TGCAGTGAGTCAGCAACAGTTTCCAGATTTCCCAACAGTTCCCATCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAGTCAGCAACAGTTTCCAGATTTCCCAACAGTTCCCATCCCAC  600

seq1  TCCAGGAGCAAAGGTTCTGGAATGTCCTCAAAGGCAATCATATCCCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGCAAAGGTTCTGGAATGTCCTCAAAGGCAATCATATCCCTAGA  650

seq1  GACCTAGCCAAGCAATCAAGATAAAGGTAACCTAGTCTTCCCAGGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGCCAAGCAATCAAGATAAAGGTAACCTAGTCTTCCCAGGAATTT  700

seq1  CCTTAATCTGCTTCAAATTGGGTCTGCTCGCTCACATGGGCATCTCTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCTGCTTCAAATTGGGTCTGCTCGCTCACATGGGCATCTCTATC  750

seq1  ATTGTAAATGGTAGACCCTCCCATGCTGGACTTCTGCAGAAGAAACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAATGGTAGACCCTCCCATGCTGGACTTCTGCAGAAGAAACAGTT  800

seq1  CTTTGCTTTTGTATACTATTTGAGTCTGGGGTATCATTCTTTGGTGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTTGTATACTATTTGAGTCTGGGGTATCATTCTTTGGTGAATC  850

seq1  ATAGACATTTGGGTGCTCCTCAAGGATTCTCTAGAGAACCCCTTATCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATTTGGGTGCTCCTCAAGGATTCTCTAGAGAACCCCTTATCCAA  900

seq1  ATAGTGCAGTG--TTTTTTTTTTTCCATTGGTACTTCCAAGTGCCCTCTC  948
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAGTGTTTTTTTTTTTTTCCATTGGTACTTCCAAGTGCCCTCTC  950

seq1  AGTTGTCTCTTGTCTTATGCGTCTCTTTTTCTAGTTT-AGTCCTGAGACC  997
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTTGTCTCTTGTCTTATGCGTCTCTTTTTCTAGTTTAAGTCCTGAGACC  1000

seq1  AAGAG-ACACAAAGCAGATGTGTATTTGGTCATTCAGCCAGCAGCTAT--  1044
      ||||| ||||||||||||||||||||||||||||||||||||||||||  
seq2  AAGAGAACACAAAGCAGATGTGTATTTGGTCATTCAGCCAGCAGCTATTA  1050

seq1  AAAAGAA-GCTCCCAACTCCCTACCAGAAGCAGGAGAACTTGCTAGTTCT  1093
      ||||||| |||||||||||||||| ||||||| |||||||||||||||||
seq2  AAAAGAAGGCTCCCAACTCCCTACAAGAAGCA-GAGAACTTGCTAGTTCT  1099


seq1: chrX_125428662_125429684
seq2: B6Ng01-288P19.g_69_1096 (reverse)

seq1  GAAAT--AGAAACAAAAGAGAA-ATCACAAAGGAAGATG-AACCTGGAAA  46
      |||||  ||||||||||||||| |||||||||||||||| ||||||||||
seq2  GAAATAAAGAAACAAAAGAGAACATCACAAAGGAAGATGAAACCTGGAAA  50

seq1  TTGAAAACCTAGGA-AAGAGATCAGGAATCATACAT-CAATAAT-GTTAA  93
      ||||||| |||||| | ||||||||||||||||||| ||||||| || ||
seq2  TTGAAAA-CTAGGATAGGAGATCAGGAATCATACATCCAATAATGGTAAA  99

seq1  GAGGTATAGCAGTGGATATGTTTAAAATGGAATATATATATATATATATA  143
      |||||||||||||||||||||||| ||| | | |||||||||||||||||
seq2  GAGGTATAGCAGTGGATATGTTTATAATTGGA-ATATATATATATATATA  148

seq1  TATATATATATATATATATATATATATATTTAATTCTAAAAGAATAGATA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATTTAATTCTAAAAGAATAGATA  198

seq1  AAATTAAAAATTTGGAGAACCTTAGAAGAGAGCAACAAAATAAAGTTATG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAATTTGGAGAACCTTAGAAGAGAGCAACAAAATAAAGTTATG  248

seq1  CAACCTCAATCTATTTTTTCCTAAACCCAGTGCCACATGAATCCCTGCTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCAATCTATTTTTTCCTAAACCCAGTGCCACATGAATCCCTGCTT  298

seq1  TATGAAGTGTCCAAAGTTTAATATTTCACAACAGCAACACAAAAGGGGGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTGTCCAAAGTTTAATATTTCACAACAGCAACACAAAAGGGGGT  348

seq1  ACTCTACACTAAAAAAAAATTGTAGTGACTTGTGGGTACATTCATTCTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACACTAAAAAAAAATTGTAGTGACTTGTGGGTACATTCATTCTTT  398

seq1  TAGTGAAGAGTACATAGGTGTATGCATATGTAAAGGCATCAAAATGCATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGAGTACATAGGTGTATGCATATGTAAAGGCATCAAAATGCATA  448

seq1  TTAGCATTTTATAGTCTATGTGTGTATGTTTGTGTATATGCATGTATTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTTATAGTCTATGTGTGTATGTTTGTGTATATGCATGTATTCT  498

seq1  TGTGAGACTGGTTGGATGCATGAAGGATGGATGTATATACACGTGTGTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACTGGTTGGATGCATGAAGGATGGATGTATATACACGTGTGTGT  548

seq1  GTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGTGTGTGTATGTGTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCACGTGTGTGTATGTGTGT  598

seq1  TTGTGTAGCAAAGGACAACTTTTCTTTAGATTCTCAGGTGCTACCCACCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGCAAAGGACAACTTTTCTTTAGATTCTCAGGTGCTACCCACCT  648

seq1  TAAAAATCTTAAAATCAAAAGAACAAAAACAAAACAAAGCAAAAAAAGTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTTAAAATCAAAAGAACAAAAACAAAACAAAGCAAAAAAAGTA  698

seq1  TCAGCAGAGTTTCTCACTGGCCTGTGACATACCAATAGGGTATGCAGGCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGTTTCTCACTGGCCTGTGACATACCAATAGGGTATGCAGGCT  748

seq1  AGCTGGCTAACAAATATCAAGAATACACACTTTCCCACATCCTCAGTGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTAACAAATATCAAGAATACACACTTTCCCACATCCTCAGTGCA  798

seq1  GTAAATAAGTTTTCAATATCACACACTGGTTTCTTTCTTTTTTGAAACAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAGTTTTCAATATCACACACTGGTTTCTTTCTTTTTTGAAACAG  848

seq1  TGTCTCGCCATGTAGCCTCATAGTGATCTAACTGTCTCTGCTTTGAGTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCGCCATGTAGCCTCATAGTGATCTAACTGTCTCTGCTTTGAGTGC  898

seq1  TAAGAGTAAATGCCTATGCCACCATGCCAAGCTGATGGAGTTTCTTTCTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTAAATGCCTATGCCACCATGCCAAGCTGATGGAGTTTCTTTCTC  948

seq1  TTGTTTTGTTCTGTTCTGCTTTGTTTTGTTTTGTTTTTGAGACAGGGTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTCTGTTCTGCTTTGTTTTGTTTTGTTTTTGAGACAGGGTTT  998

seq1  CTCTATGTAGCCTTGGCTGTCCTGGAATTC  1023
      ||||||||||||||||||||||||||||||
seq2  CTCTATGTAGCCTTGGCTGTCCTGGAATTC  1028


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