BAC Information

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BAC

Clone NameB6Ng01-289K21
ChromosomeX (Build37)
Map Location 61,157,885 - 61,282,623
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4, LOC100040011
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289K21.bB6Ng01-289K21.g
ACCGA087012GA087013
length1,1631,057
definitionB6Ng01-289K21.b B6Ng01-289K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,157,885 - 61,159,045)(61,281,559 - 61,282,623)
sequence
gaattctaaaggaagcaaaggcccattaaagaaaaacttgtcttttttgt
ttaaaaaaaaaaaaaaaagaatctctgtccttggtcaacacctaacactc
cagttggtctgagtcaatgacctatctaaggaaataaggtctcaagaaag
cttagaccatcactatggacgatgggcccaccttaagccatatcttaaag
atataggaggagaaattatcccttcaatgagatagtgtagtcctgataag
caatgaggatgttctgttgggtctgcctacatttctgtatcttctcaaaa
aggtatttttccttttcttcttttctctctttcaggtgctggttagagcc
tactattgctttttctggtactttcagctttcttactctccaaagtgcct
ttccccaccatatggctccctacttacctcagatggcattccttatttta
ctttctcttctccatcttccttcttcaggaatatgctgatacttgtagct
tgttgacctggctgtttcttttaaagtctaatgaggttgttctcaggttt
tacttttaagtcccattcttaaactctttagttaataaaactagaaaaat
caagagaggatcttgatttccctagtaacattttgcaatatcaataggat
gcctcaacatttctgataatggaagaataaaaaaaaacttattatatcaa
tcttgaattaagaatttctttaaattacaagtgattattaaatatacctt
ggcaaattcagtgaaatactcttgatttaatgattattctactaggatca
cattctcatttactgtattgccctatgttattgagatatccatcaaatga
attcacacaagacacagagtaaactgcagaaaacatacaggtaaagtttc
ttaaggaataatgtgaagcatacttgatgggtgagcatggacaatattta
atgaaactattgtggcaacatgtttttagttaggctttaacattgtaatt
ttcaagtttctgaagacacttccctgatgatatcttcctgtaataggtaa
ttcaaagcagatgtagatacttttgtgttttaaaactttattgtatatat
agcccatatgaatgttcatattaacaatcttaatactatactatattaac
tatatagaatgac

gaattcacccctgtgactaagttggaactttttaaccatttgtgctctac
ccttctttctgcagtgtgatccagaaaaatctggaaactgcctcattaaa
atgttccccacagggaggttttaaactggaaacaagagaaagaaagtact
tttcataaatagaaacacaagtttgattttaatttgtggcagacactgtc
tcatggtgaaataaaaatagagtcatggttcagaagtagaaaaggaaaac
aacaagctttaacattaattaggtatggttaacatttctaagcatctgat
tttctgaaataccttttgtatagatacatttaaatttcctttctaaagag
aatctctgtaccataacctttggtaaaaaaaaaaagttgtgagggaccct
tctccgacaacaccaaaaaaagagttgtgacttatatcttaaattttagt
atacatggctttcaaaaattaattagaaaatttctgtttctcccacgaac
agatgcagttgattatatttgactaaaatggacatcacagaagagctcct
agtttcctaagagcaactttagtctttatatttcttctaaatacaatggt
atgattggtcctgaatgatatgagatgaatatgataagtgatctgtcagg
tgaggttacctttataatcaagttattcacttcccaaatgttagttgaat
gaaaagaatgaacgccctttctagtgcacctctaattctccaatccaaaa
agagtaaaacaaaactaaactaaacaaacaaacaaaaaccccaaaatatt
gatctctgtcttatgggggaaatggtaataattttctcaagaaatattgc
tatatttaccgttgaggagtcttttctcacaattttgatatattattcat
tccagataatttttgtcctagggtggcatttttaaagtttcaaaaatatg
acacaagtgctattttattcttctgactcatgcagtatttttcaaaattg
agggctgctattgtaatattattaaaatacatgccaaaatctaaagtcta
cattaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_61157885_61159045
seq2: B6Ng01-289K21.b_48_1210

seq1  GAATTCTAAA-GAAGCAAAGGCCCATTAAAGAAAAACTTGTCTTTTTTGT  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGGAAGCAAAGGCCCATTAAAGAAAAACTTGTCTTTTTTGT  50

seq1  TTAAAAAAAAAAAAAAAAGAATCTCTGTCCTTGGTCAACACCTAACACTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAGAATCTCTGTCCTTGGTCAACACCTAACACTC  100

seq1  CAGTTGGTCTGAGTCAATGACCTATCTAAGGAAATAAGGTCTCAAGAAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTCTGAGTCAATGACCTATCTAAGGAAATAAGGTCTCAAGAAAG  150

seq1  CTTAGACCATCACTATGGACGATGGGCCCACCTTAAGCCATATCTTAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCATCACTATGGACGATGGGCCCACCTTAAGCCATATCTTAAAG  200

seq1  ATATAGGAGGAGAAATTATCCCTTCAATGAGATAGTGTAGTCCTGATAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGAGGAGAAATTATCCCTTCAATGAGATAGTGTAGTCCTGATAAG  250

seq1  CAATGAGGATGTTCTGTTGGGTCTGCCTACATTTCTGTATCTTCTCAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGATGTTCTGTTGGGTCTGCCTACATTTCTGTATCTTCTCAAAA  300

seq1  AGGTATTTTTCCTTTTCTTCTTTTCTCTCTTTCAGGTGCTGGTTAGAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTTTCCTTTTCTTCTTTTCTCTCTTTCAGGTGCTGGTTAGAGCC  350

seq1  TACTATTGCTTTTTCTGGTACTTTCAGCTTTCTTACTCTCCAAAGTGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGCTTTTTCTGGTACTTTCAGCTTTCTTACTCTCCAAAGTGCCT  400

seq1  TTCCCCACCATATGGCTCCCTACTTACCTCAGATGGCATTCCTTATTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACCATATGGCTCCCTACTTACCTCAGATGGCATTCCTTATTTTA  450

seq1  CTTTCTCTTCTCCATCTTCCTTCTTCAGGAATATGCTGATACTTGTAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTCTCCATCTTCCTTCTTCAGGAATATGCTGATACTTGTAGCT  500

seq1  TGTTGACCTGGCTGTTTCTTTTAAAGTCTAATGAGGTTGTTCTCAGGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCTGGCTGTTTCTTTTAAAGTCTAATGAGGTTGTTCTCAGGTTT  550

seq1  TACTTTTAAGTCCCATTCTTAAACTCTTTAGTTAATAAAACTAGAAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAAGTCCCATTCTTAAACTCTTTAGTTAATAAAACTAGAAAAAT  600

seq1  CAAGAGAGGATCTTGATTTCCCTAGTAACATTTTGCAATATCAATAGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGGATCTTGATTTCCCTAGTAACATTTTGCAATATCAATAGGAT  650

seq1  GCCTCAACATTTCTGATAATGGAAGAATAAAAAAAAACTTATTATATCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAACATTTCTGATAATGGAAGAATAAAAAAAAACTTATTATATCAA  700

seq1  TCTTGAATTAAGAATTTCTTTAAATTACAAGTGATTATTAAATATACCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTAAGAATTTCTTTAAATTACAAGTGATTATTAAATATACCTT  750

seq1  GGCAAATTCAGTGAAATACTCTTGATTTAATGATTATTCTACTAGGATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTCAGTGAAATACTCTTGATTTAATGATTATTCTACTAGGATCA  800

seq1  CATTCTCATTTACTGTATTGCCCTATGTTATTGAGATATCCATCAAATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATTTACTGTATTGCCCTATGTTATTGAGATATCCATCAAATGA  850

seq1  ATTCACACAAGACACAGAGTAAACTGCAGAAAACATACAGGTAAAGTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACAAGACACAGAGTAAACTGCAGAAAACATACAGGTAAAGTTTC  900

seq1  TTAAGGAATAATGTGAAGCATACTTGATGGGTGAGCATGGACAATATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAATAATGTGAAGCATACTTGATGGGTGAGCATGGACAATATTTA  950

seq1  ATGAAACTATTGTGGCAACATGTTTTTAGTTAGGCTTT-ACATTGT-ATT  997
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGAAACTATTGTGGCAACATGTTTTTAGTTAGGCTTTAACATTGTAATT  1000

seq1  TTCAAGTTTCTG-AGACAACTTCCCTGAATGATATCTTCCTGT-ATAGGT  1045
      |||||||||||| |||| ||||||||| ||||||||||||||| ||||||
seq2  TTCAAGTTTCTGAAGAC-ACTTCCCTG-ATGATATCTTCCTGTAATAGGT  1048

seq1  AATTTAAAGCAGATGTAGATTAATTTTTGTGTTTTAAAACTGTATTGTAT  1095
      |||| |||||||||||||||  | ||||||||||||||||| ||||||||
seq2  AATTCAAAGCAGATGTAGAT--ACTTTTGTGTTTTAAAACTTTATTGTAT  1096

seq1  ATATAG-CCATATGATTG-TCATATTAACAATACATAATACTATACTATA  1143
      |||||| |||||||| || ||||||||||||| | |||||||||||||||
seq2  ATATAGCCCATATGAATGTTCATATTAACAAT-CTTAATACTATACTATA  1145

seq1  TT-ACTATATTAGAATGAC  1161
      || |||||| |||||||||
seq2  TTAACTATA-TAGAATGAC  1163


seq1: chrX_61281559_61282623
seq2: B6Ng01-289K21.g_67_1123 (reverse)

seq1  GTTAATGGTAGACTTTTAGATTTTTGGCATGTATTTTAATAATA-TACAA  49
      |||||| |||||| |||||| ||||||||||||||||||||||| |||||
seq2  GTTAAT-GTAGAC-TTTAGA-TTTTGGCATGTATTTTAATAATATTACAA  47

seq1  TAGCAGCCCTTCAAATTTTGAAAAATACTGCATGGAGTCAGAAAGAATAA  99
      ||||||||||   |||||||||||||||||||| ||||||| ||||||||
seq2  TAGCAGCCCT--CAATTTTGAAAAATACTGCAT-GAGTCAG-AAGAATAA  93

seq1  AATAGCACTTGTGTCATTATTTTGAAACTTTAAAAAATGCCACCCTAGGA  149
      |||||||||||||||||  |||||||||||| ||||||||||||||||||
seq2  AATAGCACTTGTGTCATATTTTTGAAACTTT-AAAAATGCCACCCTAGGA  142

seq1  CAAAAATTATCTGGAATGAATAAATATATCAAAATTGTGAGAAAAGACTC  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAAAATTATCTGGAATGAAT-AATATATCAAAATTGTGAGAAAAGACTC  191

seq1  CTCAACGGTAAATATAGCAATATTTCTTGAGAAAATTATTACCATTTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACGGTAAATATAGCAATATTTCTTGAGAAAATTATTACCATTTCCC  241

seq1  CCATAAGACAGAGATCAATATTTTGGGGTTTTTGTTTGTTTGTTTAGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGACAGAGATCAATATTTTGGGGTTTTTGTTTGTTTGTTTAGTTT  291

seq1  AGTTTTGTTTTACTCTTTTTGGATTGGAGAATTAGAGGTGCACTAGAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTTACTCTTTTTGGATTGGAGAATTAGAGGTGCACTAGAAAG  341

seq1  GGCGTTCATTCTTTTCATTCAACTAACATTTGGGAAGTGAATAACTTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCATTCTTTTCATTCAACTAACATTTGGGAAGTGAATAACTTGAT  391

seq1  TATAAAGGTAACCTCACCTGACAGATCACTTATCATATTCATCTCATATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGTAACCTCACCTGACAGATCACTTATCATATTCATCTCATATC  441

seq1  ATTCAGGACCAATCATACCATTGTATTTAGAAGAAATATAAAGACTAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGACCAATCATACCATTGTATTTAGAAGAAATATAAAGACTAAAG  491

seq1  TTGCTCTTAGGAAACTAGGAGCTCTTCTGTGATGTCCATTTTAGTCAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTAGGAAACTAGGAGCTCTTCTGTGATGTCCATTTTAGTCAAAT  541

seq1  ATAATCAACTGCATCTGTTCGTGGGAGAAACAGAAATTTTCTAATTAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAACTGCATCTGTTCGTGGGAGAAACAGAAATTTTCTAATTAATT  591

seq1  TTTGAAAGCCATGTATACTAAAATTTAAGATATAAGTCACAACTCTTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGCCATGTATACTAAAATTTAAGATATAAGTCACAACTCTTTTT  641

seq1  TTGGTGTTGTCGGAGAAGGGTCCCTCACAACTTTTTTTTTTTACCAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTGTCGGAGAAGGGTCCCTCACAACTTTTTTTTTTTACCAAAGG  691

seq1  TTATGGTACAGAGATTCTCTTTAGAAAGGAAATTTAAATGTATCTATACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTACAGAGATTCTCTTTAGAAAGGAAATTTAAATGTATCTATACA  741

seq1  AAAGGTATTTCAGAAAATCAGATGCTTAGAAATGTTAACCATACCTAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATTTCAGAAAATCAGATGCTTAGAAATGTTAACCATACCTAATT  791

seq1  AATGTTAAAGCTTGTTGTTTTCCTTTTCTACTTCTGAACCATGACTCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAAGCTTGTTGTTTTCCTTTTCTACTTCTGAACCATGACTCTAT  841

seq1  TTTTATTTCACCATGAGACAGTGTCTGCCACAAATTAAAATCAAACTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCACCATGAGACAGTGTCTGCCACAAATTAAAATCAAACTTGT  891

seq1  GTTTCTATTTATGAAAAGTACTTTCTTTCTCTTGTTTCCAGTTTAAAACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTTATGAAAAGTACTTTCTTTCTCTTGTTTCCAGTTTAAAACC  941

seq1  TCCCTGTGGGGAACATTTTAATGAGGCAGTTTCCAGATTTTTCTGGATCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGGGGAACATTTTAATGAGGCAGTTTCCAGATTTTTCTGGATCA  991

seq1  CACTGCAGAAAGAAGGGTAGAGCACAAATGGTTAAAAAGTTCCAACTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGAAAGAAGGGTAGAGCACAAATGGTTAAAAAGTTCCAACTTAG  1041

seq1  TCACAGGGGTGAATTC  1065
      ||||||||||||||||
seq2  TCACAGGGGTGAATTC  1057


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