BAC Information

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BAC

Clone NameB6Ng01-289L16
ChromosomeX (Build37)
Map Location 142,896,687 - 143,107,383
singlet/doubletdoublet
Overlap geneEG666730
Upstream geneAmot, EG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
Downstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289L16.bB6Ng01-289L16.g
ACCGA087047GA087048
length1,1341,065
definitionB6Ng01-289L16.b B6Ng01-289L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,896,687 - 142,897,831)(143,106,320 - 143,107,383)
sequence
gaattcaactgttttattttgtatattgtgaaaatgacttataagtagac
atagctctaagagtccaagaaagtaaatctttgccatagctacagggaac
ctggtcaagtggtcagggtgttaaaatgaaatttagtagtaaaaggaagc
tgacagagtttaaaagcctggatgagaaaacaatgaacatcaaaccacct
aaaagtaattacactgcacttattccaatattctctgtgttatttgatgc
catcgttatttcacattgtgcaaattagaatcccagagagcatcttattc
cttctactttgttatcctttccagtataattgattagttacctgttctaa
atgtggtgtacagataggagaacaaaaatttaccaagtatgatatattgg
acaatataaagtgacagaatcaaacctgaatctacctcctaagagtaaaa
agactatagtcaatttttggaaacttaggaagacaggggaaggaacaact
tcaaattatcaagttcacattgaaagtagaaaaccacaacaggaaataat
ggagaaaccaaaatatcttccagggatgagacagttattggttttccaat
actgagcagtcagccatggaatcatatacacacaaacaacaaaatggact
cctcaggagatagacatgtatattattaagaatattactattggacattt
aaatttttgttaacaataatcattattacttactactgctaagtaataat
aagttactacattgtttaactagtcctcgggagttccaatcacattctga
ttatcctagtaaaagataccacgaaagaaatttaatgttattttcagtct
ttagtcctagttgtggaaaaactgttctgcgtgaagttttgctttataat
tggactgttcttacaatttatctgtgtgacaggaattacaatatcctgtc
tattagtcgaagataatgccttttcaactgtgaaagctgctgctgcacaa
ttgatgcacaacagttgatggcagtcttcagaatcatgaattgacaaaac
atagaacaggctctgctgttatgatggatgagtactagctgctgtcaggt
cgtttactctttggactcagctcgatacacttga

gaattctttaggatagttttataattctaaaatcagcatagcatttcatt
tatttaccttatttcttttggacacaatgatcacattgtgatgaaacatc
ccttatgatttactttgtcattttgaaaagttctttttgtgttagtgaga
tgcctcagttggtaagaggatttgctgacaaacctgattaaatgggctca
atcccatggtcccacaagatagaagagaacagagcaaaacaattttcctc
tgactgtcatacataggctaacacatgcctgcatatgtgaatgcccccaa
ataaacaaatgaaatttccttcgtatattttgttgtgcttctgatggatc
ttttgagttcaatttaaaaattgtgagggggaagagagagacagagacac
tgagagagacaaagataaaaacagagacacagaggaatcagaaaataaaa
agctaatcaataattatagcataattaatatatcaaaaagagaaagctag
aacattaaacagcctacacaacacattgtcacatttaatgaaagtggtaa
catttatggaggtttacagaaaatttgtcacatatgaaggctaagtaaaa
ggggatgggtggtagcaagtagtgacaaagtaacatacacaattctctga
tcttcatatatactgtaggtcaaaatagctttaagtagaatgactaggat
gtacaagaagtttcagttttaggtaaagattttcatcatttcccccaact
ctccatgaattgctatataatataccttcaacattaaagacagaacaata
catttcagaacataatttgaagatcatgttttgtttaagctgggagttgt
tgaaattacctcatataatagttcccatactccactgcacatcactatta
tgtgggagccttttttaatgtctggattctgtaccctttatgatgaaaat
gtcaaaatggtagtgatttatttctttttcttttctttttattttttttt
tttgccaaggaagggaggagggaggctaagttgagcaatacccttgttta
tacgaccattttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_142896687_142897831
seq2: B6Ng01-289L16.b_48_1181

seq1  GAATTCAACTGTTTTATTTTGTATATTGTGAAAATGACTTATAAGTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTTTTATTTTGTATATTGTGAAAATGACTTATAAGTAGAC  50

seq1  ATAGCTCTAAGAGTCCAAGAAAGTAAATCTTTGCCATAGCTACAGGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTAAGAGTCCAAGAAAGTAAATCTTTGCCATAGCTACAGGGAAC  100

seq1  CTGGTCAAGTGGTCAGGGTGTTAAAATGAAATTTAGTAGTAAAAGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAAGTGGTCAGGGTGTTAAAATGAAATTTAGTAGTAAAAGGAAGC  150

seq1  TGACAGAGTTTAAAAGCCTGGATGAGAAAACAATGAACATCAAACCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTTTAAAAGCCTGGATGAGAAAACAATGAACATCAAACCACCT  200

seq1  AAAAGTAATTACACTGCACTTATTCCAATATTCTCTGTGTTATTTGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATTACACTGCACTTATTCCAATATTCTCTGTGTTATTTGATGC  250

seq1  CATCGTTATTTCACATTGTGCAAATTAGAATCCCAGAGAGCATCTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTATTTCACATTGTGCAAATTAGAATCCCAGAGAGCATCTTATTC  300

seq1  CTTCTACTTTGTTATCCTTTCCAGTATAATTGATTAGTTACCTGTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTTTGTTATCCTTTCCAGTATAATTGATTAGTTACCTGTTCTAA  350

seq1  ATGTGGTGTACAGATAGGAGAACAAAAATTTACCAAGTATGATATATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGTACAGATAGGAGAACAAAAATTTACCAAGTATGATATATTGG  400

seq1  ACAATATAAAGTGACAGAATCAAACCTGAATCTACCTCCTAAGAGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAAGTGACAGAATCAAACCTGAATCTACCTCCTAAGAGTAAAA  450

seq1  AGACTATAGTCAATTTTTGGAAACTTAGGAAGACAGGGGAAGGAACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAGTCAATTTTTGGAAACTTAGGAAGACAGGGGAAGGAACAACT  500

seq1  TCAAATTATCAAGTTCACATTGAAAGTAGAAAACCACAACAGGAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATCAAGTTCACATTGAAAGTAGAAAACCACAACAGGAAATAAT  550

seq1  GGAGAAACCAAAATATCTTCCAGGGATGAGACAGTTATTGGTTTTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCAAAATATCTTCCAGGGATGAGACAGTTATTGGTTTTCCAAT  600

seq1  ACTGAGCAGTCAGCCATGGAATCATATACACACAAACAACAAAATGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAGTCAGCCATGGAATCATATACACACAAACAACAAAATGGACT  650

seq1  CCTCAGGAGATAGACATGTATATTATTAAGAATATTACTATTGGACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAGATAGACATGTATATTATTAAGAATATTACTATTGGACATTT  700

seq1  AAATTTTTGTTAACAATAATCATTATTACTTACTACTGCTAAGTAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTGTTAACAATAATCATTATTACTTACTACTGCTAAGTAATAAT  750

seq1  AAGTTACTACATTGTTTAACTAGTCCTCGGGAGTTCCAATCACATTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTACATTGTTTAACTAGTCCTCGGGAGTTCCAATCACATTCTGA  800

seq1  TTATCCTAGTAAAAGATACCACGAAAGAAATTTAATGTTATTTTCAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAGTAAAAGATACCACGAAAGAAATTTAATGTTATTTTCAGTCT  850

seq1  TTAGTCCTAGTTGTGGAAAAACTGTTCTGCGTGAAGTTTTGCTTTATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTAGTTGTGGAAAAACTGTTCTGCGTGAAGTTTTGCTTTATAAT  900

seq1  TGGACTGTTCTTACAATTTATCTGTGTGACAGGAATTACAATATCCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTTCTTACAATTTATCTGTGTGACAGGAATTACAATATCCTGTC  950

seq1  TATTAGTCGAAGATAATGCCCTTTCAACTGTTGAAAGCTGCTGCTGCACC  1000
      |||||||||||||||||||| ||||||||| ||||||||||||||||| |
seq2  TATTAGTCGAAGATAATGCCTTTTCAACTG-TGAAAGCTGCTGCTGCA-C  998

seq1  AATTGATGCCACAACAGTTGAATGGGCCAGTCTTCAG-ATCATGAATTTG  1049
      |||||||| ||||||||||| ||||  |||||||||| |||||||| |||
seq2  AATTGATG-CACAACAGTTG-ATGG--CAGTCTTCAGAATCATGAA-TTG  1043

seq1  ACAAAACATAG-ACAGGCTTCTGCTGTTATTGTTTGATGAGTACTAGCTG  1098
      ||||||||||| |||||| |||||||||| || | |||||||||||||||
seq2  ACAAAACATAGAACAGGC-TCTGCTGTTA-TGATGGATGAGTACTAGCTG  1091

seq1  CTGGTCAGTCCGTTTTTACTCTTT-GACTCAAGCTCAAATACACTTGA  1145
      || |||||  ||  |||||||||| ||||| |||||  ||||||||||
seq2  CT-GTCAGGTCG--TTTACTCTTTGGACTC-AGCTC-GATACACTTGA  1134


seq1: chrX_143106320_143107383
seq2: B6Ng01-289L16.g_68_1132 (reverse)

seq1  AATAAAATGTCTGTATTAAAACAAGGGTA-TGCTC-ACTTAGCCT-CCTC  47
      |||||||||   ||||  ||||||||||| ||||| ||||||||| ||||
seq2  AATAAAATGGTCGTAT--AAACAAGGGTATTGCTCAACTTAGCCTCCCTC  48

seq1  CT-CCTTCCTTGGCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAGA  96
      || |||||||||||     |||||||||||| ||||||||||||||||||
seq2  CTCCCTTCCTTGGC-----AAAAAAAAAAAATAAAAAGAAAAGAAAAAGA  93

seq1  AATAAATCACTACCATTTTGACATTTTCATCAT-AAGGGTACAGAATCCA  145
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATAAATCACTACCATTTTGACATTTTCATCATAAAGGGTACAGAATCCA  143

seq1  GACATT-AAAAAGGCTCCCACATAATAGTGATGTGCAGTGGAGTATGGGA  194
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAAAAAAGGCTCCCACATAATAGTGATGTGCAGTGGAGTATGGGA  193

seq1  ACTATTATATGAGGTAATTTCAACAACT-CCAGCTTAAACAAAACATGAT  243
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTATTATATGAGGTAATTTCAACAACTCCCAGCTTAAACAAAACATGAT  243

seq1  CTTC-AATTATGTTCTGAAATGTATTGTTCTGTCTTTAATGTTGAAGGTA  292
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTATGTTCTGAAATGTATTGTTCTGTCTTTAATGTTGAAGGTA  293

seq1  TATTATATAGCAATTCATGGAGAGTTGGGGGAAATGATGAAAATCTTTAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATAGCAATTCATGGAGAGTTGGGGGAAATGATGAAAATCTTTAC  343

seq1  CTAAAACTGAAACTTCTTGTACATCCTAGTCATTCTACTTAAAGCTATTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTGAAACTTCTTGTACATCCTAGTCATTCTACTTAAAGCTATTT  393

seq1  TGACCTACAGTATATATGAAGATCAGAGAATTGTGTATGTTACTTTGTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTACAGTATATATGAAGATCAGAGAATTGTGTATGTTACTTTGTCA  443

seq1  CTACTTGCTACCACCCATCCCCTTTTACTTAGCCTTCATATGTGACAAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCTACCACCCATCCCCTTTTACTTAGCCTTCATATGTGACAAAT  493

seq1  TTTCTGTAAACCTCCATAAATGTTACCACTTTCATTAAATGTGACAATGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAAACCTCCATAAATGTTACCACTTTCATTAAATGTGACAATGT  543

seq1  GTTGTGTAGGCTGTTTAATGTTCTAGCTTTCTCTTTTTGATATATTAATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTAGGCTGTTTAATGTTCTAGCTTTCTCTTTTTGATATATTAATT  593

seq1  ATGCTATAATTATTGATTAGCTTTTTATTTTCTGATTCCTCTGTGTCTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATAATTATTGATTAGCTTTTTATTTTCTGATTCCTCTGTGTCTCT  643

seq1  GTTTTTATCTTTGTCTCTCTCAGTGTCTCTGTCTCTCTCTTCCCCCTCAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATCTTTGTCTCTCTCAGTGTCTCTGTCTCTCTCTTCCCCCTCAC  693

seq1  AATTTTTAAATTGAACTCAAAAGATCCATCAGAAGCACAACAAAATATAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAATTGAACTCAAAAGATCCATCAGAAGCACAACAAAATATAC  743

seq1  GAAGGAAATTTCATTTGTTTATTTGGGGGCATTCACATATGCAGGCATGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATTTCATTTGTTTATTTGGGGGCATTCACATATGCAGGCATGT  793

seq1  GTTAGCCTATGTATGACAGTCAGAGGAAAATTGTTTTGCTCTGTTCTCTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCTATGTATGACAGTCAGAGGAAAATTGTTTTGCTCTGTTCTCTT  843

seq1  CTATCTTGTGGGACCATGGGATTGAGCCCATTTAATCAGGTTTGTCAGCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTGTGGGACCATGGGATTGAGCCCATTTAATCAGGTTTGTCAGCA  893

seq1  AATCCTCTTACCAACTGAGGCATCTCACTAACACAAAAAGAACTTTTCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTTACCAACTGAGGCATCTCACTAACACAAAAAGAACTTTTCAA  943

seq1  AATGACAAAGTAAATCATAAGGGATGTTTCATCACAATGTGATCATTGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAAGTAAATCATAAGGGATGTTTCATCACAATGTGATCATTGTG  993

seq1  TCCAAAAGAAATAAGGTAAATAAATGAAATGCTATGCTGATTTTAGAATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGAAATAAGGTAAATAAATGAAATGCTATGCTGATTTTAGAATT  1043

seq1  ATAAAACTATCCTAAAGAATTC  1064
      ||||||||||||||||||||||
seq2  ATAAAACTATCCTAAAGAATTC  1065


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