BAC Information

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BAC

Clone NameB6Ng01-290I10
ChromosomeX (Build37)
Map Location 140,216,628 - 140,217,776
singlet/doubletsinglet
Overlap genePak3
Upstream geneTmem164, Ammecr1, Rgag1, LOC209541, Chrdl1
Downstream geneCapn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I10.bB6Ng01-290I10.g
ACCGA087648GA087649
length1,1711,151
definitionB6Ng01-290I10.b B6Ng01-290I10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaatagactgcaccagaaaagaaattcctccagacacataata
atcagaacaaatgcactaaataaagatagaatattaaaagcagtaaggga
aaacagtaaagtaacatatcaagacaggcatatcagaattacaccagatt
gttcaccagagactatgaaagccagaagatcctggacagatgttatacag
aaactaaaagaacacaaattccagcccaggctactatacccagccaaact
ttcaattaccatagatggagaaaccaaagtattccatgacaaaaccaaat
tcacacattatctttccaagaatccagcccatcaatggataataacagaa
aaagccaatacaaggacagaaaccacatcctagaaaaagcaagaaagtaa
tccttcaacaaacctaaaagaagacagccacaagaacagaatgccaaatc
taacaacaaaaataataggaagcaacaatgactttccttaatatctctta
atatcaatggactcaattccccaataaaaagacatagactaagaaactgg
ctatgcaaacaggacccaacattttgctgtttacaggaaacccatctcag
ggaaaaagacagaaactaccccagagtgaaaggctggaaaacaattttcc
aagcaagtggtatgaagaaacaagctggagtagccatactaatatcgaat
aaaatcgacttccaacccaaagctatcaaaaaagacaaggagggacactt
cacactcatcaaaggtaaaatcctccaagaggaaatgtcaattctgaata
tctatgctctaaatgcaagggcagccacagtcattaaacaaactttagta
aagctcaaagcacacattgcacctcacacaatatagtaggagacttcaac
aaaccactttcatcaatggacagataatattaacagaaactaacagggac
acagtgaaactaacagaagttatgaagcaatggatctaacagatatctac
agatcatttttatcctaaaacaaaaaagatataccttcttctcacactca
tgtctgtgactagtatatagtctcaaaatgaacatatactagttcacaaa
acagtctcacagaatcaaaattgactgtcccatgcatcctatcggaatcc
acgaccggaacctagggctgt
gaattctatttcgaagtctatcagacaggaatctattaccttgtataggt
tacttcttgctgtggttgtatttccttgttcctttggatgatttcaattt
gactaagatgttgccttcctagtgtgaaccacaaagcacaaagcccttga
atcaatccacagaattccttgggttttattgaagggaacaagagtgaggg
cacctgacagggttcttggtcccattgggagatttcctctttaattcatt
ttctacactgtgtaatcaaatgaggctcacttaaagaaaaacataagttt
tagggttcttttttttaattctgtgtgctttggttttaggtagctataga
tatccctgaccttgccaggaatactctagtgttatcctgaagtgtgcttt
aagtgaagtggtcttcagaaaacacccgagacactcctagctcataacct
tcacaccaaatctgtctagaatgtaaagaccaccccactccctgccttac
caaacaaaaagaacctggaccatggtgtgaaacatgctgcatgtgtgact
tggtaacctcacactgatatgaatcataaaaagcactgcagtgattaaaa
aaacagtcacagggatgaaatgatatgcaaataaatgcataatatttaaa
taataccttaagtcagaaggcatgagctaatgaaatgagcggtgtagaag
gtgattattatagtcaacttttcagtaatagttatttctcattttaattt
cattttaacttttaaatttgttgtctaacaaacaataattatgtatacat
agtactggagtagagtggggtatttcaatgcactggtcaaaccagagcaa
ttagcatttttatctccttatcattttcaggaccagagaaatggagcaac
agcagaagacagagccctttgacatcacctattgtctggcctctaccttc
catttctgtctctctttctaccaactgccttccccctgttggctcttagc
tcctgcacttgccttgttttcttctgttcctttcttctcacagcttctca
cctttccctgactttctgcatcaattcttcttgtctgcttttgaaaattc
tcatggatatgcttgacttcccctttcaatgtgctcggttagttcccaaa
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_140216628_140217776
seq2: B6Ng01-290I10.g_63_1213

seq1  GAATTCTATTTCGAAGTCTATCAGACAGGAATCTATTACCTTGTATAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTCGAAGTCTATCAGACAGGAATCTATTACCTTGTATAGGT  50

seq1  TACTTCTTGCTGTGGTTGTATTTCCTTGTTCCTTTGGATGATTTCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTGCTGTGGTTGTATTTCCTTGTTCCTTTGGATGATTTCAATTT  100

seq1  GACTAAGATGTTGCCTTCCTAGTGTGAACCACAAAGCACAAAGCCCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGATGTTGCCTTCCTAGTGTGAACCACAAAGCACAAAGCCCTTGA  150

seq1  ATCAATCCACAGAATTCCTTGGGTTTTATTGAAGGGAACAAGAGTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCCACAGAATTCCTTGGGTTTTATTGAAGGGAACAAGAGTGAGGG  200

seq1  CACCTGACAGGGTTCTTGGTCCCATTGGGAGATTTCCTCTTTAATTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACAGGGTTCTTGGTCCCATTGGGAGATTTCCTCTTTAATTCATT  250

seq1  TTCTACACTGTGTAATCAAATGAGGCTCACTTAAAGAAAAACATAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACTGTGTAATCAAATGAGGCTCACTTAAAGAAAAACATAAGTTT  300

seq1  TAGGGTTCTTTTTTTTAATTCTGTGTGCTTTGGTTTTAGGTAGCTATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTCTTTTTTTTAATTCTGTGTGCTTTGGTTTTAGGTAGCTATAGA  350

seq1  TATCCCTGACCTTGCCAGGAATACTCTAGTGTTATCCTGAAGTGTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGACCTTGCCAGGAATACTCTAGTGTTATCCTGAAGTGTGCTTT  400

seq1  AAGTGAAGTGGTCTTCAGAAAACACCCGAGACACTCCTAGCTCATAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGTGGTCTTCAGAAAACACCCGAGACACTCCTAGCTCATAACCT  450

seq1  TCACACCAAATCTGTCTAGAATGTAAAGACCACCCCACTCCCTGCCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAAATCTGTCTAGAATGTAAAGACCACCCCACTCCCTGCCTTAC  500

seq1  CAAACAAAAAGAACCTGGACCATGGTGTGAAACATGCTGCATGTGTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAGAACCTGGACCATGGTGTGAAACATGCTGCATGTGTGACT  550

seq1  TGGTAACCTCACACTGATATGAATCATAAAAAGCACTGCAGTGATTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACCTCACACTGATATGAATCATAAAAAGCACTGCAGTGATTAAAA  600

seq1  AAACAGTCACAGGGATGAAATGATATGCAAATAAATGCATAATATTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCACAGGGATGAAATGATATGCAAATAAATGCATAATATTTAAA  650

seq1  TAATACCTTAAGTCAGAAGGCATGAGCTAATGAAATGAGCGGTGTAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTTAAGTCAGAAGGCATGAGCTAATGAAATGAGCGGTGTAGAAG  700

seq1  GTGATTATTATAGTCAACTTTTCAGTAATAGTTATTTCTCATTTTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATTATAGTCAACTTTTCAGTAATAGTTATTTCTCATTTTAATTT  750

seq1  CATTTTAACTTTTAAATTTGTTGTCTAACAAACAATAATTATGTATACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAACTTTTAAATTTGTTGTCTAACAAACAATAATTATGTATACAT  800

seq1  AGTACTGGAGTAGAGTGGGGTATTTCAATGCACTGGTCAAACCAGAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGAGTAGAGTGGGGTATTTCAATGCACTGGTCAAACCAGAGCAA  850

seq1  TTAGCATTTTTATCTCCTTATCA-TTTCAGGACCAGAGAAATGGAGCAAC  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAGCATTTTTATCTCCTTATCATTTTCAGGACCAGAGAAATGGAGCAAC  900

seq1  AGCAGAAGACAGAGCCCTTTGACATCACCTATTGTCTGGCCTCTACC-TC  948
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCAGAAGACAGAGCCCTTTGACATCACCTATTGTCTGGCCTCTACCTTC  950

seq1  CATTTCTGTCTCCTCTTTCTACCAACTGCCTTCCCCCTGTTGGCTCTTAG  998
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGTCT-CTCTTTCTACCAACTGCCTTCCCCCTGTTGGCTCTTAG  999

seq1  CTCCTGCACTTGCCTTGTTTTCTTCTGTTTCCTTTCCTTCTCACAGCTTC  1048
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CTCCTGCACTTGCCTTGTTTTCTTCTG-TTCCTTT-CTTCTCACAGCTTC  1047

seq1  TCACCTTTCCCTGACTTCCTGCATC-ATTC-TCTTGTCCTGCTTTTGAAA  1096
      ||||||||||||||||| ||||||| |||| |||||| ||||||||||||
seq2  TCACCTTTCCCTGACTTTCTGCATCAATTCTTCTTGT-CTGCTTTTGAAA  1096

seq1  AATCTCCGTGGTTAT-CCTGACTTCCCCCTTTCAA-ATGCTCCG-TAGTT  1143
      | ||| | ||| ||| | |||||| ||||||||||  ||||| | |||||
seq2  ATTCT-CATGGATATGCTTGACTT-CCCCTTTCAATGTGCTCGGTTAGTT  1144

seq1  -CCAAAC  1149
       ||||||
seq2  CCCAAAC  1151