MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-290M13
Chromosome	X (Build37)
Map Location	41,062,831 - 41,063,965
singlet/doublet	singlet
Overlap gene	LOC100039987
Upstream gene	Odz1, Gm362, LOC100039977
Downstream gene	LOC637141, Wdr40c
Link	Open Mouse BAC browser

Click to get alignment info.

name	Odz1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23963 MGI:1345185
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm362 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236774 MGI:2685208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC100039977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100039987 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039987
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC637141 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:637141
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Wdr40c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245403 MGI:2445178
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Odz1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130019 GeneID:23963 MGI:1345185
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : odd Oz/ten-m homolog 1 (Drosophila) transcript_id : NM_011855.3

name	Gm362 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38086140 GeneID:236774 MGI:2685208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : gene model 362, (NCBI) transcript_id : XM_141720.2

name	LOC100039977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271527 GeneID:100039977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039977 transcript_id : XM_001473881.1

name	Wdr40c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:130502093 GeneID:245403 MGI:2445178
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 40C transcript_id : NM_175539.3

name	Odz1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657413 GeneID:23963 MGI:1345185
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA] codon_start : 1 product : odd Oz/ten-m homolog 1 protein_id : NP_035985.2

name	Gm362 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38086141 GeneID:236774 MGI:2685208
definition	codon_start : 1 product : hypothetical protein protein_id : XP_141720.2

name	LOC100039977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271528 GeneID:100039977
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473931.1

name	Wdr40c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425322 CCDS:CCDS30100.1 GeneID:245403 MGI:2445178
definition	codon_start : 1 note : WD40 domain product : WD repeat domain 40C protein_id : NP_780748.1

name	LOC100039987 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039987
definition	number : 1 pseudo : _no_value

name	LOC637141 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637141
definition	number : 2 pseudo : _no_value

name	LOC637141 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:637141
definition	number : 1 pseudo : _no_value

clone name	MSMg01-386C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388M04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-484H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159P04
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-290M13.b	B6Ng01-290M13.g
ACC	GA087840	GA087841
length	1,141	1,144
definition	B6Ng01-290M13.b	B6Ng01-290M13.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctttgtttagctctgaaccccattttaatggggttatttgaattt cgggagtccagcttcttgagctctttgtatatattggatatcagtccccc tagcagacttgggattggtaaaaatccgttcccaatctgtttgtggcctt tttgccttatcgacagtgtcttttgccttacagaagctttgaaattttat gaggtcctatttgtcaattcatgattttacaatgcaagccattgctgttt tgcttaggaatttcccctctgtgcccaaatcttcaaggctttttcctact ttctcctctaataatttcactgtctgtgctcttatgtgaaggtctttgat ccacttagacttgagctttgtacaaggagattagaatggatcaattttca ttcttctacatgataaccatcagttgtgccagcaccatttgttgaaaatg ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg accatagctgtatggattcatttctgggtattcagttctattccattgat ctacctgtctgtcactgtacctgtaccatacagttttttatcacaattgc tcagtagtacagctttaggtcaggcatggtgattccaacagtttctttta tcattaagaagagtttttgctatcctaggtttttttttttctttttccca gattaatttgcaaattgccctttctatctcagtgaagaattgagttggag ttttgatggggattgcattgaatttgtagattgctttcagcaggatagcc atgtttactaggttaatcctgatgatccatgagccatgggagatctttcc atcttctgagatgttcaatttctttcgtcagagacttgaagttcttatca tacagatctttcacttccatggtagagtcacaccaacgtattttatatgt tttgactatgagaaggtgttgttttcaatttcttctcagcccgtttatct ttgtgtggagaacgcatgatattgagttattttatatcagctactgacag agctgtttatagcttagagttctctgggtgatttggtcactctattacta ttaatcctgcaaatggaatgaccttctccagtaatacctag	gaattcagatttttcaggtagacaccataacattcataccacttcacaca ggcaaactggaatccccatgctatcctatggcctatccatgaaagctcag tgggtgaactcctagcctttcacatatcagataactgaacttagttgaat ccagattgtaaccacttccaataaccatgtattttctaagccactgaagt caggttatacactgcatttgagaaaataagcgcattggagttctttatgt cacaatgttggaaatgatgaacttgaggttgtttacatttcattggaccc agttgagtcagatctttccctcttactgacaggcccccaccatggggatg accagcttggaacttgcagtcatatgtactctttgccagagacaatattc taacaaaaggctaccatgctgtagatctaccatctctccctgcaattgtc ctccatgacatcaacaagggcaatgtaatcttgccaagtcctttactaag atattcttggtaaaagtcatgtcatcagcaacaatgccaacaacaataat cttgttctggggagcctgttcttccctaataacattcataatcagctggt ctttcaaggttgccatcttgaactctaaaacttttgggaacaccaatgaa tgataagggacatcgggtaagcagcagcatggtctgggctctggagaaat agctctatcactcccaaccacgtatttcaataacttttatactcttttcc ctttttctggtttcttgaatattagtggcctaaatatttggttttcctgt gttccataaatcatcgaattgttctttaccactttccattatttttactt ttttgcttggcctatattttcaaaaatcttctatccaaactcattggcta ctgttactttttttttatttttattttttatgggttattttatttattta catttcaaatgttatcccccttccctgatttctcctccacaaacacccta tctcatccccattgcctgtcagcaagcatttcttgcatcatcaataagtg ccctgagtttggtgttctgcatatggatgaaatttccaggttggtacaag tctctggcctgggaccactctcagtcttggcctccacattttgt
quality values	Open. Hide. 58 33 28 22 58 58 58 58 58 58 58 58 41 41 58 58 58 62 62 62 47 62 43 62 62 47 41 62 62 62 47 56 56 47 46 46 37 37 62 62 62 47 62 62 62 54 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 54 62 59 59 62 62 62 62 59 59 59 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 49 51 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 49 62 62 62 62 62 62 62 54 62 62 62 62 34 62 62 62 62 62 62 62 62 62 62 47 46 62 62 62 62 62 62 54 46 62 58 58 58 58 58 58 58 58 54 58 58 58 45 42 58 58 54 58 58 58 54 58 58 58 58 58 52 46 58 58 58 58 58 58 58 58 58 58 58 58 58 52 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 54 54 58 58 58 58 54 54 58 58 58 54 52 54 42 43 58 58 58 58 58 52 58 58 58 58 51 54 49 54 53 54 51 54 58 54 58 54 58 58 50 52 53 58 49 49 51 49 51 51 58 58 58 58 48 42 58 53 47 50 36 58 50 50 52 58 58 51 58 35 28 46 50 50 32 58 48 50 50 58 58 51 50 37 58 58 52 50 52 53 52 50 53 50 58 32 58 58 31 58 25 49 58 58 58 54 49 50 52 50 50 53 54 50 49 14 58 50 58 58 58 58 58 58 58 58 58 50 50 40 58 49 58 37 40 58 50 32 31 49 31 39 31 35 44 54 49 41 41 31 54 40 44 49 49 32 34 37 44 54 53 43 32 41 39 42 49 42 39 32 39 52 54 53 22 54 27 35 54 40 49 27 41 37 49 36 51 28 35 54 54 40 40 39 35 32 49 46 37 33 24 31 42 26 31 31 45 45 51 29 18 49 47 47 29 42 24 23 15 31 34 31 40 49 31 43 33 33 34 28 7 47 37 30 31 27 31 28 25 31 43 29 51 33 31 42 35 31 12 38 23 30 30 31 34 35 38 30 31 43 33 31 28 25 29 31 29 31 33 38 21 41 23 25 28 33 46 31 38 19 31 33 26 33 47 33 31 31 35 36 36 36 31 39 27 30 41 23 31 24 41 33 23 30 24 28 32 46 36 31 30 47 30 30 24 22 31 32 22 44 18 31 21 29 31 22 25 33 18 21 23 31 19 22 31 32 32 23 31 33 34 33 23 24 31 32 33 48 28 26 21 12 12 14 10 17 19 23 22 4 4 7 16 20 14 31 32 17 21 20 14 10 10 24 34 27 28 26 30 47 47 17 8 11 12 18 8 8 34 34 19 11 28 20 18 10 16 4 9 7 19 15 5 15 15 22 7 13 27 19 34 34 12 21 6 11 6 31 18 14 17 22 18 20 26 16 24 15 34 14 25 18 29 5 15 14 17 9 22 12 11 5 15 13 20 8 7 4 14 4 1 3 3 5 19 8 20 17 3 4 15 3 7 7 11 15 12 3 25 30 10 4 6 5 10 17 7 15 17 9 5 23 5 7 14 9 7 5 22 8 18 5 7 15 27 9 7 6 6 3 5 8 11 11 1 3 4 4 6 11 6 10 10 22 18 12 6 12 13 2 3 12 11 3 2 3 1 3 5 2 1 5 4 6 5 23 4 5 5 9 6 12 4 3 1 3 6 4 3 26 14 1 2 2 9 4 3 2 5 5 6 4 4 2 4 5 7 3 1 3 8 4 6 4 4 3 3 2 2	Open. Hide. 46 47 56 42 62 47 47 62 54 62 62 62 62 49 47 36 62 62 62 62 62 59 62 62 59 59 59 62 62 62 49 59 62 62 59 59 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 49 42 62 62 54 62 62 59 62 59 62 62 62 62 54 62 59 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 59 54 62 62 62 62 62 62 62 56 42 54 62 62 62 62 59 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 49 49 35 47 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 54 48 58 58 54 58 58 58 58 54 58 58 54 58 58 43 54 52 58 54 58 58 58 58 58 58 58 54 58 58 58 54 58 58 58 58 58 58 58 58 58 58 54 54 58 58 58 58 54 58 58 58 54 58 54 58 58 53 58 58 58 58 58 58 58 58 58 58 58 58 51 58 51 58 58 58 58 58 53 50 48 58 54 58 58 58 53 54 47 48 47 47 54 54 58 51 54 58 47 52 58 58 51 49 51 58 58 58 51 54 58 58 58 58 49 50 50 54 58 58 50 34 50 54 58 52 51 49 48 48 46 51 58 58 58 51 51 54 50 54 53 49 50 49 51 54 50 54 51 58 58 58 58 50 58 44 43 39 49 46 52 51 58 49 58 37 31 58 46 39 52 51 37 58 50 51 32 50 53 53 42 58 58 32 54 54 30 54 53 39 49 51 32 51 45 49 54 54 45 53 52 54 29 38 50 52 52 52 46 42 46 25 54 54 38 42 53 32 49 47 53 52 52 45 40 52 38 37 30 51 16 12 44 29 19 23 17 11 16 26 42 32 39 37 37 37 52 46 33 41 40 49 54 44 46 35 37 39 39 52 52 49 49 31 26 52 40 33 49 49 49 32 32 32 49 33 28 51 37 40 33 44 42 46 40 40 33 18 32 53 31 30 49 40 23 46 29 32 47 41 31 36 42 46 40 41 46 30 51 51 31 27 37 40 46 41 51 51 31 34 37 30 29 32 51 39 35 31 32 31 28 10 18 25 30 44 30 46 15 22 24 46 23 27 28 46 31 43 43 46 37 30 31 33 38 34 43 31 46 47 46 31 31 34 31 47 46 46 46 31 31 31 36 31 31 31 21 23 29 31 31 32 31 46 46 31 27 21 48 47 47 30 32 31 29 26 25 31 34 31 20 18 19 39 33 31 28 31 32 31 31 31 29 29 31 29 27 22 22 12 20 31 32 28 44 47 48 48 48 48 48 32 36 21 47 48 48 24 29 28 48 48 48 44 28 31 21 20 44 29 12 13 24 26 48 43 24 28 16 43 20 25 21 48 26 19 23 23 31 47 34 32 27 43 34 32 19 7 12 23 32 29 19 22 21 37 14 8 24 39 18 8 17 33 22 48 31 16 10 11 21 18 16 11 11 9 14 40 25 13 16 8 18 12 13 28 17 14 19 24 28 27 16 22 21 14 13 13 14 12 7 8 11 14 11 16 28 16 20 17 12 13 28 20 28 15 7 11 7 9 4 3 6 20 20 19 20 13 15 13 6 5 7 4 5 12 5 27 8 9 7 11 4 17 28 14 11 17 3 6 6 4 6 9 9 11 16 15 8 8 21 12 2 5 10 13 30 11 10 23 8 18 14 9 7 13 4 7 9 3 1 2 10 10 4 2 2 6 9 13 6 9 17 5 6 8 10 18 7 1 7 16 12 7 7 3 3 2 8 3 1 2 4 4 5 8 15 6 8 10 11 5 4 7 14 17 22 4 7 5

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_41062831_41063965
seq2: B6Ng01-290M13.g_66_1209 (reverse)

seq1  ACAAAATGTGGA-GCAGAGACTGAAGGAGTGG--CCA-GCCAGAGAC-TG  45
      |||||||||||| ||  |||||||  ||||||  ||| ||||||||| ||
seq2  ACAAAATGTGGAGGCCAAGACTGA--GAGTGGTCCCAGGCCAGAGACTTG  48

seq1  T-CCCACCTGGGAA-TTCATCCCATATGCAG-ACACCAAACTCA-GGCAC  91
      | || |||||| || ||||| |||||||||| |||||||||||| |||||
seq2  TACCAACCTGGAAATTTCAT-CCATATGCAGAACACCAAACTCAGGGCAC  97

seq1  -TATTGATGATGCCAAGAAATGCTTGCTGACAGGCAATGGGGATGAGATA  140
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTATTGATGATG-CAAGAAATGCTTGCTGACAGGCAATGGGGATGAGATA  146

seq1  GGGTGTTTGTGGAGGAGAAATCAGGG-AGGGGGATAACATTTGAAATGTA  189
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGTGTTTGTGGAGGAGAAATCAGGGAAGGGGGATAACATTTGAAATGTA  196

seq1  AATAAATAAAATAA-CCATAAAAAATAAAAAT-AAAAAAAAGTAACAGTA  237
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  AATAAATAAAATAACCCATAAAAAATAAAAATAAAAAAAAAGTAACAGTA  246

seq1  GCCAATGAGTTTGGATAGAAGATTTTTGAAAATATAGGCCAAGCAAAAAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGAGTTTGGATAGAAGATTTTTGAAAATATAGGCCAAGCAAAAAA  296

seq1  GTAAAAATAATGGAAAGTGGTAAAGAACAATTCGATGATTTATGGAACAC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATAATGGAAAGTGGTAAAGAACAATTCGATGATTTATGGAACAC  346

seq1  AGGAAAACCAAATATTTAGGCCACTAATATTCAAGAAACCAGAAAAAGGG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACCAAATATTTAGGCCACTAATATTCAAGAAACCAGAAAAAGGG  396

seq1  AAAAGAGTATAAAAGTTATTGAAATACGTGGTTGGGAGTGATAGAGCTAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTATAAAAGTTATTGAAATACGTGGTTGGGAGTGATAGAGCTAT  446

seq1  TTCTCCAGAGCCCAGACCATGCTGCTGCTTACCCGATGTCCCTTATCATT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGAGCCCAGACCATGCTGCTGCTTACCCGATGTCCCTTATCATT  496

seq1  CATTGGTGTTCCCAAAAGTTTTAGAGTTCAAGATGGCAACCTTGAAAGAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTGTTCCCAAAAGTTTTAGAGTTCAAGATGGCAACCTTGAAAGAC  546

seq1  CAGCTGATTATGAATGTTATTAGGGAAGAACAGGCTCCCCAGAACAAGAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATTATGAATGTTATTAGGGAAGAACAGGCTCCCCAGAACAAGAT  596

seq1  TATTGTTGTTGGCATTGTTGCTGATGACATGACTTTTACCAAGAATATCT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTGGCATTGTTGCTGATGACATGACTTTTACCAAGAATATCT  646

seq1  TAGTAAAGGACTTGGCAAGATTACATTGCCCTTGTTGATGTCATGGAGGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGGACTTGGCAAGATTACATTGCCCTTGTTGATGTCATGGAGGA  696

seq1  CAATTGCAGGGAGAGATGGTAGATCTACAGCATGGTAGCCTTTTGTTAGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCAGGGAGAGATGGTAGATCTACAGCATGGTAGCCTTTTGTTAGA  746

seq1  ATATTGTCTCTGGCAAAGAGTACATATGACTGCAAGTTCCAAGCTGGTCA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCTCTGGCAAAGAGTACATATGACTGCAAGTTCCAAGCTGGTCA  796

seq1  TCCCCATGGTGGGGGCCTGTCAGTAAGAGGGAAAGATCTGACTCAACTGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGGTGGGGGCCTGTCAGTAAGAGGGAAAGATCTGACTCAACTGG  846

seq1  GTCCAATGAAATGTAAACAACCTCAAGTTCATCATTTCCAACATTGTGAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATGAAATGTAAACAACCTCAAGTTCATCATTTCCAACATTGTGAC  896

seq1  ATAAAGAACTCCAATGCGCTTATTTTCTCAAATGCAGTGTATAACCTGAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAACTCCAATGCGCTTATTTTCTCAAATGCAGTGTATAACCTGAC  946

seq1  TTCAGTGGCTTAGAAAATACATGGTTATTGGAAGTGGTTACAATCTGGAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGCTTAGAAAATACATGGTTATTGGAAGTGGTTACAATCTGGAT  996

seq1  TCAACTAAGTTCAGTTATCTGATATGTGAAAGGCTAGGAGTTCACCCACT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAAGTTCAGTTATCTGATATGTGAAAGGCTAGGAGTTCACCCACT  1046

seq1  GAGCTTTCATGGATAGGCCATAGGATAGCATGGGGATTCCAGTTTGCCTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCATGGATAGGCCATAGGATAGCATGGGGATTCCAGTTTGCCTG  1096

seq1  TGTGAAGTGGTATGAATGTTATGGTGTCTACCTGAAAAATCTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTGGTATGAATGTTATGGTGTCTACCTGAAAAATCTGAATTC  1144

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Alignment Information