BAC Information

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BAC

Clone NameB6Ng01-292E14
Chromosome2 (Build37)X (Build37)
Map Location 122,525,231 - 122,526,13758,350,978 - 58,351,096
singlet/doubletsingletsinglet
Overlap geneSlc30a4
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197
Downstream genePldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292E14.bB6Ng01-292E14.g
ACCGA088965GA088966
length944936
definitionB6Ng01-292E14.b B6Ng01-292E14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,525,231 - 122,526,137)(58,350,978 - 58,351,096)
sequence
gaattccctaaatagaacctctataccaccttctctgaggctcagggaac
atgtggaagagggggctgaaaaaagttcagagctggaggatggagagatc
tgccacaaaaagacgtcttctgtatatgacatagctgttgtacccatgga
ctcggtgccactgtggttacctgatcaagacctgtaacaggtttggccct
gtcaacatttcatccaggaagagagaagatttttagggctgcacctctcc
ctgagggactactgacagtcaatggtttctggggagaagggtgtcactct
cttcagtggtgtactcactgctaagtttcccatgcttcataagtcatttt
cttcaatgctcacacaaactgtcccaattaaagtcagtgagtgggtcaca
tacccaaaacgacaggaaagtgtgagccttgctgggaaaaagggttccag
tgtgaaagggagcagggatgtaagagagggggtgtgtaaaatgattaaaa
ttcattataagcaagtgtaaaatattgaagaatttttaaaatgcaattaa
aaattcaacaaaagctcacttactatgtctaatttgtatcatttactgtt
ttaggtatcaggatgtcagcttatatttcagtcaaaaaattaaaataata
aaagacatgtaaatagagttcaagtggggaaaataagatgcagaggttta
tcccaatagtgaaaaacaagtctttcagagatgtcttttgaaatgaagta
tgactgactaacaagcagtcaatgcacagtctgggaaaaggcaggaatat
aaaagctcaagcgagaggctagagaggctcagtggttaggagaacttgct
actcttgttctggttcccagccccttagaccaggaagttcacactcaact
gaagcttcagctctaggggatctgatgcctctaggcactgtact
gaattccagggagggttatgtgtcctgttaccttgattggttagctctat
ctctaagggtctgactgattctctaattgattaaggctctagggactttc
cagggtggttgcttattcattatagctgcctatgtttgcttcagaccaga
tgacaagatgtcctaggattgtttgcctgaagctgtggttgactgactac
agatttcttgatcctgattctcatttcggggaaatagcaactactctcct
gaattatcagttttcagcctatcatggaatcagattggctttgtctaact
cagtcctctcattccctgttctgatttgtaactgaatcaaatcattgatt
tgtcagttctttccaaggtccaagttattggccaagggataaattaggag
ctaaggaccataaatttattgctgaaatgctggcctttctgactgcatct
cagcctatgaagtgggacaaaagaagttgtacttttcttctgtaactact
tcctgctgacattagagcattgttatttgaaggcccaggaaggctgaaat
gctaaccaaaggctaggcaatagggcatttatcagaagcatctgattagg
tgatcaagctaaaagacagggaaccgtcatattgatcaattgttaatcat
aagcggtcagcaggtcagaaagagtgttcctcttttctccacatcctcgc
cagcatctactgtcacctgagttttttgatcttagccattctgactggag
tgagatggaatctcagggttgttttgatttgcatttctctgatgattaag
gatgctgaacatttcttcagacgcttctcagccattcgatattcctcagg
tgagaatttgtttagctctgagccccattttttaatggtgttatttgatt
ttctggagtccaccttctttgagttcttgatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_122525231_122526137
seq2: B6Ng01-292E14.b_81_988

seq1  GAGGCTCAGGGAACATGTGGAAGAGGGGGCTGAAAAAAGTTCAGAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAGGGAACATGTGGAAGAGGGGGCTGAAAAAAGTTCAGAGCTGG  50

seq1  AGGATGGAGAGATCTGCCACAAAAAGACGTCTTCTGTATATGACATAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAGAGATCTGCCACAAAAAGACGTCTTCTGTATATGACATAGCT  100

seq1  GTTGTACCCATGGACTCGGTGCCACTGTGGTTACCTGATCAAGACCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACCCATGGACTCGGTGCCACTGTGGTTACCTGATCAAGACCTGTA  150

seq1  ACAGGTTTGGCCCTGTCAACATTTCATCCAGGAAGAGAGAAGATTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTGGCCCTGTCAACATTTCATCCAGGAAGAGAGAAGATTTTTAG  200

seq1  GGCTGCACCTCTCCCTGAGGGACTACTGACAGTCAATGGTTTCTGGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACCTCTCCCTGAGGGACTACTGACAGTCAATGGTTTCTGGGGAG  250

seq1  AAGGGTGTCACTCTCTTCAGTGGTGTACTCACTGCTAAGTTTCCCATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTCACTCTCTTCAGTGGTGTACTCACTGCTAAGTTTCCCATGCT  300

seq1  TCATAAGTCATTTTCTTCAATGCTCACACAAACTGTCCCAATTAAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTCATTTTCTTCAATGCTCACACAAACTGTCCCAATTAAAGTCA  350

seq1  GTGAGTGGGTCACATACCCAAAACGACAGGAAAGTGTGAGCCTTGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGGTCACATACCCAAAACGACAGGAAAGTGTGAGCCTTGCTGGG  400

seq1  AAAAAGGGTTCCAGTGTGAAAGGGAGCAGGGATGTAAGAGAGGGGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGTTCCAGTGTGAAAGGGAGCAGGGATGTAAGAGAGGGGGTGTG  450

seq1  TAAAATGATTAAAATTCATTATAAGCAAGTGTAAAATATTGAAGAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATTAAAATTCATTATAAGCAAGTGTAAAATATTGAAGAATTTT  500

seq1  TAAAATGCAATTAAAAATTCAACAAAAGCTCACTTACTATGTCTAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCAATTAAAAATTCAACAAAAGCTCACTTACTATGTCTAATTTG  550

seq1  TATCATTTACTGTTTTAGGTATCAGGATGTCAGCTTATATTTCAGTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTACTGTTTTAGGTATCAGGATGTCAGCTTATATTTCAGTCAAA  600

seq1  AAATTAAAATAATAAAAGACATGTAAATAGAGTTCAAGTGGGGAAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATAATAAAAGACATGTAAATAGAGTTCAAGTGGGGAAAATAA  650

seq1  GATGCAGAGGTTTATCCCAATAGTGAAAAACAAGTCTTTCAGAGATGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGGTTTATCCCAATAGTGAAAAACAAGTCTTTCAGAGATGTCT  700

seq1  TTTGAAATGAAGTATGACTGACTAACAAGCAGTCAAGGCACAGTCTGGGA  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGAAATGAAGTATGACTGACTAACAAGCAGTCAATGCACAGTCTGGGA  750

seq1  AAAGGCAGGAATATAAAAGCTCAGGCGAGAGGCTAGAGAGGCTCAGTGGT  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGGCAGGAATATAAAAGCTCAAGCGAGAGGCTAGAGAGGCTCAGTGGT  800

seq1  TAGGAGAACTTGCTACTCTTGTTCTGGTTCCCAGCCCC-TAGACCAGGAA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGGAGAACTTGCTACTCTTGTTCTGGTTCCCAGCCCCTTAGACCAGGAA  850

seq1  GTTCACACTCACCTGAAGCTTCAGCTCTAGGGGATCTGATGCCTCTAGGC  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACTCAACTGAAGCTTCAGCTCTAGGGGATCTGATGCCTCTAGGC  900

seq1  ACTGTACT  907
      ||||||||
seq2  ACTGTACT  908

seq1: chrX_58350978_58351096
seq2: B6Ng01-292E14.g_738_858 (reverse)

seq1  TCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTC  50
      |||| |||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACTCCAGTC  50

seq1  AGAATGGCTAAGAT-GAAAAACTCAGGTGACAGCAGATGCTGGCAAGGAT  99
      ||||||||||||||  ||||||||||||||||| |||||||||| |||||
seq2  AGAATGGCTAAGATCAAAAAACTCAGGTGACAGTAGATGCTGGCGAGGAT  100

seq1  GTGGAG-AAAGAGGAACACTC  119
      |||||| ||||||||||||||
seq2  GTGGAGAAAAGAGGAACACTC  121