BAC Information

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BAC

Clone NameB6Ng01-292I23
ChromosomeX (Build37)
Map Location 92,153,030 - 92,161,275
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda
Downstream geneGm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik, Las1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292I23.bB6Ng01-292I23.g
ACCGA089169GA089170
length790951
definitionB6Ng01-292I23.b B6Ng01-292I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,156,382 - 92,161,275)(92,153,030 - 92,153,181)
sequence
gaattcacctgcctctgcctcccaagtactaggattaaaggcctctgcca
ccactgcctgacaaccctaaaactcttaaacctcaaaaataaaacactaa
aattataaaaaaaaaaaacaactcaagaacactaaaaaaaacccaaaaaa
agttaaaccctaaaagaaaccataaagcctaaaaaatttagcccccaaac
ctaacatacactaaaatcctttataaaaccggaaaaaacactaaatatac
actaagccctgaataccacaaaataccactaaaacactcttctaaaaacc
ataaaaaaccctttttaaaaacccctaagctcagcggtgatggcccacac
ctttaaaaccagcacttgggaggcagaggcaggcaaatttctgagttcaa
agccagcctggtctagacagtgagttccaggacagccagggctacacaga
gaaaccctgtctcaaaaaaaagaagaaaaaaataaagagcaagcaagaga
cacagaaagaaacagcctaaacttttaaaaataaatgcacaagaacccaa
aaatgaccctaaaacattatttattgaatttttctatattttggaatttt
tcgagactgggtttctctatgtctatacctggctgtcctggaactcgctc
tgtaaacagggatggcctcgaactcggaaaatctgttgcggctgttatca
caggtgtggggattagaggcgtggggccatcaactgcctgacacccctaa
aactctcaaccccacaaataaacctgaaatttctcacaaa
gaattcctgagttgggggctagcctggtttacagagtgagtcccgggaca
gtctggaatatacacagagtgagtcccaggacagtcagggatatacacag
agaaagccagtcaggagaaactcaaaaaaaaaaaaaaaaaaacccttaaa
atttgttgcgcgctcaactggccaggaagaacgacgctgctacaggatcc
ttctgcacacgtttattcagtcctgtttcttctttctctgtatttccctt
gtttatatctcccttgtttatatctctcccttgtttatatatctcccttg
tttttatatctcccctgtttttatatctctcccttgtttatatctccctt
gtttttatatctcccttgtttttatatctcccttgtttttatatctcccc
cgaaccctgggcctctcactcttttatactctcagttcccatccacacac
agcaggccacaccacctcaccaggcacgcagcttcagctaatcagggcag
caggggcaaatctccatcaaaatggattcaccagtatcctggtacacctg
cgcagcactcaagatgtttgtgtcttatatgaggaagtcaggtgcaagtc
atatgacttagctacagtccctggcgcctttaggactgccgccacacctg
ctcctaacaattcccccttttttcttttttggcagagagaatgtctgtac
atagcccctcgcaaccatgccccttacccgtccttgggtgacaaacagca
ttggtttgatccctgtcttgggttggtgacatgcccagggagtcttatca
ctgactacctctcaatcatgccaagccactcctggggagattgtgttttg
cttgcggcaggtgcatcaaaaggccaggatgttaattaacctatggccag
atcttaattgctgcagcaagcctcatggtgaggtagaggtctgatcccag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_92156382_92161275
seq2: B6Ng01-292I23.b_49_822 (reverse)

seq1  GGTTTATTTTTGGGGTTGAAGAGTTTTAGGGTTGTCAGGCAGTAGTGGCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATGCCTTTAATCCCAGTACTTGGGAGACAGAGGCAGGAGATTTTCTGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTCGAGGCCAGCCTGGTATACAGAGTGAGTTCCAGGACAGCCAGGTATAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACATAGAGAAACCCAGTCTCGAAAATTCAAAAAAATAATGTTTTAGGGTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTTGGGTTCTTATGCATTTATTTTTAAAAGTTTAGGCTGTTTCTTTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTCTCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGACAGGG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCAGGCT  350
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTTTGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGTTTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGTGTGGGCCATCACCGCCCAGCTTAGGGGTTTTTAAAAAGGGTTTT  450
                                                        
seq2  --------------------------------------------------  0

seq1  TTATGGTTTTTAGAAGAGTGTTTTAGTAGTATTTTGTGGTATTCAGGGCT  500
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTGTATATTTAGTGTTTTTTCCGGTTTTTTAAAGGATTTTAGTGTATG  550
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGGTTTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTTTAGGGTTT  600
                                                        
seq2  --------------------------------------------------  0

seq1  AACTTTTTTTGGGTTTTTTTTAGTGTTCTTGAGTTGTTTTTTTTTTTTTT  650
                                                        
seq2  --------------------------------------------------  0

seq1  TTATAATTTTAGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCA  700
                                                        
seq2  --------------------------------------------------  0

seq1  GGCAGTGGTGGCACAGGCCTTTAATCCTAGTACTTGGGAGGCAGAGGCAG  750
                                                        
seq2  --------------------------------------------------  0

seq1  GTGAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTCCCAGGA  800
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGATATACAC  850
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAAAGCCAGTCAGGAGAAACTCAAAAAAAAAAACAGCCTTAAAATTT  900
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGGTCATTTTTTGGTTCTTATGTATTTATTTTTAGAATTTTAGGTGTT  950
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGTTTGTTTGTTTGATTGATTGATTTTTTTCGAGAAAGTGTTTCTCT  1000
                                                        
seq2  --------------------------------------------------  0

seq1  GTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCA  1050
                                                        
seq2  --------------------------------------------------  0

seq1  AACTCAGAAATTTGCCTGCCTCTGCCCACCAAGTGCTGGTATTAAAGGTG  1100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGCCACCAGCACCCAGCTTAAGGGTTTTTTAAACAGGGCTTTGTATGG  1150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTAGAAGAGTGTTGTAGTGGGGTTTTTGTGTTTGGCTTTCACGTTTA  1200
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTATATTTAGTATTTTTTTTTCTGGGTTTTTAAAGGATTTTAGCATG  1250
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTAGGGTTTGGGGCTCATTTATACGCCTTGGGTTTTTTTTCTTTTAGG  1300
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTACTGTTATTTTATAGGATCTTTTCTAGTGTGCTTGAGTTTTTTCT  1350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAAATTTTAGGGTTTTATTTTTGGGGTTTAAGAGTTTTAGGGTTGTCA  1400
                                                        
seq2  --------------------------------------------------  0

seq1  AGCAGTGGTGGCCCATGCCTTTAATCCCAGTACTTGGAAGAGAGAGGCAG  1450
                                                        
seq2  --------------------------------------------------  0

seq1  GAGATTTTCTGAGTTCGAGGCCAGCCCGGTCTACAGAGTGAGTTCTAGGA  1500
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTCAGGGTTGTACACAGAGAAACCCAGTCTCAAAAAACCAACACAAAC  1550
                                                        
seq2  --------------------------------------------------  0

seq1  AAACAAACAAAAGTTTTAGGGTCATTTTAGGGTTCTTGTGCATTTATATT  1600
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAATTTTAGGCTTTCTTCTCTCTTACTTTTTCTCTCTCTCTTTCTCCC  1650
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTTTTTTTATTTATTCTTTTTTTTTTTTTTTGGTCTTTTCTGAGACA  1700
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGACCTCAGTCTGTAGACCAG  1750
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGCCTGGAACTCAGTAATCTGCTTGCCTCTGCCTCCCAAGTGCTGGT  1800
                                                        
seq2  --------------------------------------------------  0

seq1  ATTAAACCCCTGTGCCACCACTGCCTGGCTAAGCGTTTTTTAAAAAGGGT  1850
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTATGGTTTTTAGTAGTGTTTTCCTGTTTTTTCCGTTTTCATGGTTT  1900
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTGTATATTTAGTGTTTTTATTCTTGGTTTTTAAAGTATTTTAGTGTT  1950
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGGCTTTTTTTTTAGGCTATCGGGTTTGTTTTTAGGGTTTTACTGGGT  2000
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTTTTAGGGTCTTTTTAAGTGTTCTTGCATTTTTTTCTGTAATTTTA  2050
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTTTATTTTTGGGGTTTAAGAGTTTTAGGGTTGTCAGGCAGTAGTGGC  2100
                                                        
seq2  --------------------------------------------------  0

seq1  CCATGCCTTTAATCCCAGTACTTGGGAGACAGAGGCAGGAGATTTTCTGA  2150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCGAGGCCAGCCCGGTCTACAGAGTGAGTTCCAGGACAGCCAGGTATA  2200
                                                        
seq2  --------------------------------------------------  0

seq1  GACATAGAGAAACCCAGTCTCGAAAAATTCAAAAAAATAGAAAAATTCAA  2250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATAATGTTTTAGGGTCATTTTTGGGTTCTTGTGCATTTATTTTTAAA  2300
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTTAGGCTGTTTCTTTCTGTGTCTCTTGCTTGCTCTTTATTTTTTTCT  2350
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCCGGCTGTCCTGGAAC  2400
                                                        
seq2  --------------------------------------------------  0

seq1  TCACTGTCTAGACCAGGCTGGCTTTGAACTCAGAAATTTGCCTGCCTCTG  2450
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCCAAGTGCTGGTTTTAAAGGTGTGGGCCATCACCGCCCAGCTTAGG  2500
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTTTTAAAAAGGGTTTTTTATGGTTTTTAGAAGAGTGTTTTAGTGGTA  2550
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGTGGTATTCAGGGCTTAGTGTATATTTAGTGTTTTTTCCGGTTTTA  2600
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAGGATTTTAGTGTATGTTAGGTTTGGGGGCTAAAGTTTTTAGGCTTT  2650
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGTTTCTTCTAGGGTTTAACTTTTTTTGGGTTTTTTTTAGTGTTCTTA  2700
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTGTTTTTTTTTTTTTTTATAATTTTAGTGTTTTATTTTTGAGGTTTA  2750
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGTTTTAGGGTTGTCAGGCAGTGGTGGCAGAGGCCTTTAATCCTAGTA  2800
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGGGAGGCAGAGGCAGGTGAATTCCTGAGTTGGGGGCTAGCCTGGTTT  2850
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGAGTGAGTCCCAGGACAGTCTGGAATATACACAGAGTTAGTCCCAGG  2900
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGTCAGGGATATACACAGAGAAAGCCAGTCAGGAGAAACTCAAAAAAA  2950
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAAAAAAACCCTTAAAATTTTAGGGTCATTTTTTGGTTCTTATGTAT  3000
                                                        
seq2  --------------------------------------------------  0

seq1  TTATTTTTAGAATTTTAGGTGTTTTTTGTTTGTTTGTTTGTTTGATTGAT  3050
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTCGAGAAAGTGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACTCA  3100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGTAGACCAGGCTGGCTTCAAACTCAGAAATTTGCCTGCCTCTGCCC  3150
                                                        
seq2  --------------------------------------------------  0

seq1  ACCAAGTGCTGGTATTAAAGGTGAGTGCCACCAGCACCCAGCTTAAGGGT  3200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTAAACAGGGCTTTGTATGGTTTTTAGAAGAGTGTTGTAGTGGGGTT  3250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTGTTTGGCTTTCACATTTAAGTGTATATTTAATATTTTTTTTTCTG  3300
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTTTTAAAGGATTTTAGCATGTGTTAGGGTTTGGGGCTTATTTTTAGG  3350
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTGGGTTTTTTTTCTTTTAGGGTTTTACTGTTATTTTATAGGATCTTT  3400
                                                        
seq2  --------------------------------------------------  0

seq1  TCTAGTGTGCTTGAGTTTTTTCTTTTAAATTTTAGGGTTTTATTTTTGGG  3450
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTAAGAGTTTTAGGGTTGTCAAGCAGTGGTGGCCCATGCCTTTAATCC  3500
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTACTTGGAAGAGAGAGGCAGGAGATTTTCTGAGTTCGAGGCCAGCCC  3550
                                                        
seq2  --------------------------------------------------  0

seq1  GGTCTACAGAGTGAGTTCTAGGATAGTCAGGGTTGTACACAGAGAAACCC  3600
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCTCAAAAAACCAACACAAACAAACAAACAAAAGTTTTAGGGTCATTT  3650
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGGTTCTTGTGCATTTATTTTTAGAATTTTAGGCTTTCTTCTCTCTTA  3700
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTTTCTCTCTCTCTTTCTCCCTCTGTTTTTTTATTTATTCATTTTTTT  3750
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTGGTCTTTTCTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCC  3800
                                                        
seq2  --------------------------------------------------  0

seq1  TGGACCTCAGTCTGTAGACCAGGCTGGCCTGGAACTCAGTAATCTGCTTG  3850
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCTGCCTCCCAAGTGCTGGTATTAAACCCCTGTGCCACCACTGCCTGG  3900
                                                        
seq2  --------------------------------------------------  0

seq1  CTAAGCATTTTTTAAAAAGGGTTTTTTATGGTTTTTAGTAGTGTTTTCCT  3950
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTTTCCGTTTTCATGGTTTTAGTGTATATTTAGTGTTTTTTTTCTTG  4000
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTTAAAGTATTTTAGTGTTTTAGGCTTTTTTTTTAGGCTATCGGGTT  4050
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTTTAGGGTTTTACTGGGTTTTCTTTTAGGGTCTTTTTAAGTGTTCT  4100
                                                        
seq2  --------------------------------------------------  0

seq1  TGCATTTTTTTCTGTAATTTTAGGGTTTATTTTTGGGGTTTAAGAGTTTT  4150
                             ||||||||| ||||| || ||||||||
seq2  -----------------------GGTTTATTTGTGGGG-TTGAGAGTTTT  26

seq1  AGGGTTGTCAGGCAGTAG-TGG-CCCATGCCTTTAATCCCAGTACTTGGG  4198
      |||| ||||||||||| | ||| |||| |||| |||||||   || || |
seq2  AGGGGTGTCAGGCAGTTGATGGCCCCACGCCTCTAATCCCCACACCTGTG  76

seq1  A-GACAGAGGCAGGAGATTTTCTGAGTTCGAGGCCAGCCCGGTCTACAGA  4247
      |  ||||  |||  |||||||| ||||||||||||| ||| || ||||||
seq2  ATAACAGCCGCAACAGATTTTCCGAGTTCGAGGCCATCCCTGTTTACAGA  126

seq1  GTGAGTTCCAGGACAGCCAGGTATAGACATAGAGAAACCCAGTCTCGAAA  4297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTTCCAGGACAGCCAGGTATAGACATAGAGAAACCCAGTCTCGAAA  176

seq1  AATTCAAAAAAATAGAAAAATTCAATAAATAATGTTTTAGGGTCATTTTT  4347
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAAATATAGAAAAATTCAATAAATAATGTTTTAGGGTCATTTTT  226

seq1  GGGTTCTTGTGCATTTATTTTTAAAAGTTTAGGCTGTTTCTTTCTGTGTC  4397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTGTGCATTTATTTTTAAAAGTTTAGGCTGTTTCTTTCTGTGTC  276

seq1  TCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGACAGGGTTTCTC  4447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTGCTCTTTATTTTTTTCTTCTTTTTTTTGAGACAGGGTTTCTC  326

seq1  TGTGTAGCCCCGGCTGTCCTGGAACTCACTGTCTAGACCAGGCTGGCTTT  4497
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGTCCTGGAACTCACTGTCTAGACCAGGCTGGCTTT  376

seq1  GAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGTTTTAAAGGT  4547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGTTTTAAAGGT  426

seq1  GTGGGCCATCACCGCCCAGCTTAGGGGTTTTTAAAAAGGGTTTTTTATGG  4597
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GTGGGCCATCACCGCTGAGCTTAGGGGTTTTTAAAAAGGGTTTTTTATGG  476

seq1  TTTTTAGAAGAGTGTTTTAGTGGTATTTTGTGGTATTCAGGGCTTAGTGT  4647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAAGAGTGTTTTAGTGGTATTTTGTGGTATTCAGGGCTTAGTGT  526

seq1  ATATTTAGTGTTTTTTCCGGTTTTATAAAGGATTTTAGTGTATGTTAGGT  4697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTGTTTTTTCCGGTTTTATAAAGGATTTTAGTGTATGTTAGGT  576

seq1  TTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTCTAGGGTTTAACTTT  4747
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGGGGGCTAAATTTTTTAGGCTTTATGGTTTCTTTTAGGGTTTAACTTT  626

seq1  TTTTGGGTTTTTTTTAGTGTTCTTAAGTTG-TTTTTTTTTTTATAATTTT  4796
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TTTTGGGTTTTTTTTAGTGTTCTTGAGTTGTTTTTTTTTTTTATAATTTT  676

seq1  AGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCAGGCAGTGGTG  4846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTATTTTTGAGGTTTAAGAGTTTTAGGGTTGTCAGGCAGTGGTG  726

seq1  GCAGAGGCCTTTAATCCTAGTACTTGGGAGGCAGAGGCAGGTGAATTC  4894
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCCTTTAATCCTAGTACTTGGGAGGCAGAGGCAGGTGAATTC  774

seq1: chrX_92153030_92153181
seq2: B6Ng01-292I23.g_68_221

seq1  GAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTCCCAGGACA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATTCCTGAGTTGGGGGCTAGCCTGGTTTACAGAGTGAGTCCCGGGACA  50

seq1  GTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGATATACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAATATACACAGAGTGAGTCCCAGGACAGTCAGGGATATACACAG  100

seq1  AGAAAGCCAGTCAGGAGAAACTC--AAAAAAAAAAAAAAAAACCCTTAAA  148
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  AGAAAGCCAGTCAGGAGAAACTCAAAAAAAAAAAAAAAAAAACCCTTAAA  150

seq1  ATTT  152
      ||||
seq2  ATTT  154