BAC Information

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BAC

Clone NameB6Ng01-292O19
ChromosomeX (Build37)
Map Location 79,678,261 - 79,742,284
singlet/doubletdoublet
Overlap genenone
Upstream gene4930595M18Rik, EG667799, EG629310
Downstream geneDmd, Tsga8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292O19.bB6Ng01-292O19.g
ACCGA089435GA089436
length1,0151,106
definitionB6Ng01-292O19.b B6Ng01-292O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,678,261 - 79,679,260)(79,741,180 - 79,742,284)
sequence
gaattcctaaaattatatctgtgattattaagctcttttgtagtgggact
gctattaagtccttttctgatagtcaatgctgcaatgagaactctgccag
tctcccaagtgtcatcagttatttgctcttagatggtaaccagacttccg
actactcagagcacattccaagaggttgtaaaacaattaacaaaaagtca
taaaaagggaactaatgatttattataggtgctaggacagaagacaagat
attgattgggtttatctgtacaaaatttcactaataacttagtcatggtt
ttaaaccttcggtgaacctgtggagctgagacaggtgatagatgtttagc
caaataattactcctaatggatatgcatgtaaacattctctattgtaaac
ttctatttcattttgtgatttgattttttgtgtgaacttgtgatgaactt
tgtaacatgtaatcatgtattctgaaataagtttcagtactgaagacaaa
gaagagagagaaatgttttccctttccccacttagaagaatttttctctt
tctctgcctacaatctttctgctttcaccttacataactttcataggaaa
ctttttacaacttagtaataaactctataaccacttctctaagtgtccca
ttttcttcctgcgacttctgactatcaggctgaaagttagagacatgcag
ttcccgctgagatagaacaaaggccacattacttaagtccccctttgcta
aggctacaggtgtcaatcacctaagccagcagtcttttatcctcagaaag
agtaagaaaggttttaggactttgtagaagttatcatcaatcagcatttc
agtacagttagagagctagaaagccctgagaccctcagactttaaagcca
tcgccagaatcctactctgtgccctccaacattaccctctccaggctccg
gctgggaggcctccagaaacattcttaagtacatgcatatgcatatactc
tctgtgtgtatgtgt

gaattctacagaacagaattgaaagctttctgccatagtgctgttaaatt
gtttctcatcagacaacagtattttttctttaatccatagtgtgatacat
tttggtaatctctctagttttcatttattctttactgaacatcaatttta
tttaatgttcagcactctcttatttgctgcttagaactaccttacttagt
tgcattttttcttagcagaatcatgtcaataagaagtagaatattgttgg
tttttttttttctgtttcccactgggagataaaactcagcaatctttttg
catagcagggataaaaacaatcaaatgttgtcaagctagaacaatacaca
tgagaatttaatttgatgtcccatgagggacatgtgttctctgtgcgcaa
tcatttagagtcaataaagacaaattaccaaattacatgaaaagccaggc
tatataaagatattttctttttcttgttagatgtatctgataagaggata
agataattactaatcacaatatattttataataaaagccatttaattaaa
ccctgaatggaacacaccaagttctctcaaaggaaagttttacaggtttt
gaaaaactaatttgaatcatatttttcatgtttagtgcctgcattcatta
aaatgcaaagctcagttttagaattcagttttaaataattgaagataaca
ttccatatctaataatctttccttctctatgaaccctttactacccatta
tatgctaaattcaatgaagttattaattcaaagagaaaaaaacagacttt
tagtgtttatttaattctagttgggaaagatctgaaaaattttcatctct
tttgcaagctttttctcaaggctcttttttagtaaattccataaaagccg
tacttcatgaatcactaggctttagccaacatatgagatgtgctgaaaca
aaaacaataaaaaagcatcacagtcatcaataatagatagttggactgca
gtagtgacataggccccctctgaaggaaagtctttcttctgagctataac
ctctgttaatcatagccacaagactcccactgaataaacactatagtatt
aatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_79678261_79679260
seq2: B6Ng01-292O19.b_64_1062

seq1  ATCTGTGATTATTAAGCTCTTTTGTAGTGGGACTGCTATTAAGTCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGATTATTAAGCTCTTTTGTAGTGGGACTGCTATTAAGTCCTTTT  50

seq1  CTGATAGTCAATGCTGCAATGAGAACTCTGCCAGTCTCCCAAGTGTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGTCAATGCTGCAATGAGAACTCTGCCAGTCTCCCAAGTGTCATC  100

seq1  AGTTATTTGCTCTTAGATGGTAACCAGACTTCCGACTACTCAGAGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTGCTCTTAGATGGTAACCAGACTTCCGACTACTCAGAGCACAT  150

seq1  TCCAAGAGGTTGTAAAACAATTAACAAAAAGTCATAAAAAGGGAACTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGGTTGTAAAACAATTAACAAAAAGTCATAAAAAGGGAACTAAT  200

seq1  GATTTATTATAGGTGCTAGGACAGAAGACAAGATATTGATTGGGTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTATAGGTGCTAGGACAGAAGACAAGATATTGATTGGGTTTATC  250

seq1  TGTACAAAATTTCACTAATAACTTAGTCATGGTTTTAAACCTTCGGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAAATTTCACTAATAACTTAGTCATGGTTTTAAACCTTCGGTGAA  300

seq1  CCTGTGGAGCTGAGACAGGTGATAGATGTTTAGCCAAATAATTACTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAGCTGAGACAGGTGATAGATGTTTAGCCAAATAATTACTCCTA  350

seq1  ATGGATATGCATGTAAACATTCTCTATTGTAAACTTCTATTTCATTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATGCATGTAAACATTCTCTATTGTAAACTTCTATTTCATTTTGT  400

seq1  GATTTGATTTTTTGTGTGAACTTGTGATGAACTTTGTAACATGTAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATTTTTTGTGTGAACTTGTGATGAACTTTGTAACATGTAATCAT  450

seq1  GTATTCTGAAATAAGTTTCAGTACTGAAGACAAAGAAGAGAGAGAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGAAATAAGTTTCAGTACTGAAGACAAAGAAGAGAGAGAAATGT  500

seq1  TTTCCCTTTCCCCACTTAGAAGAATTTTTCTCTTTCTCTGCCTACAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTCCCCACTTAGAAGAATTTTTCTCTTTCTCTGCCTACAATCT  550

seq1  TTCTGCTTTCACCTTACATAACTTTCATAGGAAACTTTTTACAACTTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTCACCTTACATAACTTTCATAGGAAACTTTTTACAACTTAGT  600

seq1  AATAAACTCTATAACCACTTCTCTAAGTGTCCCATTTTCTTCCTGCGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTCTATAACCACTTCTCTAAGTGTCCCATTTTCTTCCTGCGACT  650

seq1  TCTGACTATCAGGCTGAAAGTTAGAGACATGCAGTTCCCGCTGAGATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTATCAGGCTGAAAGTTAGAGACATGCAGTTCCCGCTGAGATAGA  700

seq1  ACAAAGGCCACATTACTTAAGTCCCCCTTTGCTAAGGCTACAGGTGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCCACATTACTTAAGTCCCCCTTTGCTAAGGCTACAGGTGTCAA  750

seq1  TCACCTAAGCCAGCAGTCTTTTATCCTCAGAAAGAGTAAGAAAGGTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAAGCCAGCAGTCTTTTATCCTCAGAAAGAGTAAGAAAGGTTTTA  800

seq1  GGACTTTGTAGAAGTTATCATCAATCAGCATTTCAGTACAGTTAGAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGTAGAAGTTATCATCAATCAGCATTTCAGTACAGTTAGAGAGC  850

seq1  TAGAAAGCCCTGAGACCCTCAGACTTTAAAGCCATCGCCAGAATCCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCCCTGAGACCCTCAGACTTTAAAGCCATCGCCAGAATCCTACT  900

seq1  CTGTGCCCTCCAACATTACCCTCTCCAGGCTCCGGCTGGGAGGCCTCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCTCCAACATTACCCTCTCCAGGCTCCGGCTGGGAGGCCTCCAG  950

seq1  AAAACATTCTTAAGTACATGCATATGCATATACTCTCTGTGTGTATGTGT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAACATTCTTAAGTACATGCATATGCATATACTCTCTGTGTGTATGTGT  999


seq1: chrX_79741180_79742284
seq2: B6Ng01-292O19.g_65_1170 (reverse)

seq1  AATA-TAATACTTTATAGTGTTTA-TCAGT-GGAGTCTTGT-GCTATGAT  46
      |||| ||||||  ||||||||||| ||||| |||||||||| ||||||||
seq2  AATATTAATAC--TATAGTGTTTATTCAGTGGGAGTCTTGTGGCTATGAT  48

seq1  --ACAGAGGTTAATAGCTCAGAAGAAAGACTTTCC-TCAGAGTGGCCTAA  93
        ||||||||| ||||||||||||||||||||||| |||||| || |  |
seq2  TAACAGAGGTT-ATAGCTCAGAAGAAAGACTTTCCTTCAGAGGGGGCCTA  97

seq1  TGTCACTACTGCAGTCAAACTAATCTATTATTGATGACTTGTGATGCTTT  143
      |||||||||||||||| |||| |||||||||||||||| |||||||||||
seq2  TGTCACTACTGCAGTCCAACT-ATCTATTATTGATGAC-TGTGATGCTTT  145

seq1  TTTATTTGTTTTTGTTTCAGCACATCTCATATGTTGGCTAAAGCCTAGTG  193
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTA-TTGTTTTTGTTTCAGCACATCTCATATGTTGGCTAAAGCCTAGTG  194

seq1  ATTCATGAAGTACGGCTTTTATGGAATTTACTAAAAAAGAGCCTTGAGAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAAGTACGGCTTTTATGGAATTTACTAAAAAAGAGCCTTGAGAA  244

seq1  AAAGCTTGCAAAAGAGATGAAAATTTTTCAGATCTTTCCCAACTAGAATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGCAAAAGAGATGAAAATTTTTCAGATCTTTCCCAACTAGAATT  294

seq1  AAATAAACACTAAAAGTCTGTTTTTTTCTCTTTGAATTAATAACTTCATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACACTAAAAGTCTGTTTTTTTCTCTTTGAATTAATAACTTCATT  344

seq1  GAATTTAGCATATAATGGGTAGTAAAGGGTTCATAGAGAAGGAAAGATTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGCATATAATGGGTAGTAAAGGGTTCATAGAGAAGGAAAGATTA  394

seq1  TTAGATATGGAATGTTATCTTCAATTATTTAAAACTGAATTCTAAAACTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATGGAATGTTATCTTCAATTATTTAAAACTGAATTCTAAAACTG  444

seq1  AGCTTTGCATTTTAATGAATGCAGGCACTAAACATGAAAAATATGATTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCATTTTAATGAATGCAGGCACTAAACATGAAAAATATGATTCA  494

seq1  AATTAGTTTTTCAAAACCTGTAAAACTTTCCTTTGAGAGAACTTGGTGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTTTCAAAACCTGTAAAACTTTCCTTTGAGAGAACTTGGTGTG  544

seq1  TTCCATTCAGGGTTTAATTAAATGGCTTTTATTATAAAATATATTGTGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCAGGGTTTAATTAAATGGCTTTTATTATAAAATATATTGTGAT  594

seq1  TAGTAATTATCTTATCCTCTTATCAGATACATCTAACAAGAAAAAGAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATTATCTTATCCTCTTATCAGATACATCTAACAAGAAAAAGAAAA  644

seq1  TATCTTTATATAGCCTGGCTTTTCATGTAATTTGGTAATTTGTCTTTATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATATAGCCTGGCTTTTCATGTAATTTGGTAATTTGTCTTTATT  694

seq1  GACTCTAAATGATTGCGCACAGAGAACACATGTCCCTCATGGGACATCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTAAATGATTGCGCACAGAGAACACATGTCCCTCATGGGACATCAA  744

seq1  ATTAAATTCTCATGTGTATTGTTCTAGCTTGACAACATTTGATTGTTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTCTCATGTGTATTGTTCTAGCTTGACAACATTTGATTGTTTTT  794

seq1  ATCCCTGCTATGCAAAAAGATTGCTGAGTTTTATCTCCCAGTGGGAAACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCTATGCAAAAAGATTGCTGAGTTTTATCTCCCAGTGGGAAACA  844

seq1  GAAAAAAAAAAACCAACAATATTCTACTTCTTATTGACATGATTCTGCTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAACCAACAATATTCTACTTCTTATTGACATGATTCTGCTA  894

seq1  AGAAAAAATGCAACTAAGTAAGGTAGTTCTAAGCAGCAAATAAGAGAGTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATGCAACTAAGTAAGGTAGTTCTAAGCAGCAAATAAGAGAGTG  944

seq1  CTGAACATTAAATAAAATTGATGTTCAGTAAAGAATAAATGAAAACTAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATTAAATAAAATTGATGTTCAGTAAAGAATAAATGAAAACTAGA  994

seq1  GAGATTACCAAAATGTATCACACTATGGATTAAAGAAAAAATACTGTTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACCAAAATGTATCACACTATGGATTAAAGAAAAAATACTGTTGT  1044

seq1  CTGATGAGAAACAATTTAACAGCACTATGGCAGAAAGCTTTCAATTCTGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGAAACAATTTAACAGCACTATGGCAGAAAGCTTTCAATTCTGT  1094

seq1  TCTGTAGAATTC  1105
      ||||||||||||
seq2  TCTGTAGAATTC  1106


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