BAC Information

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BAC

Clone NameB6Ng01-292P03
ChromosomeX (Build37)
Map Location 109,172,766 - 109,173,907
singlet/doubletsinglet
Overlap geneLOC100038989
Upstream geneCylc1, LOC100042872, Rps6ka6, EG664791, D030011N01Rik
Downstream geneTex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292P03.bB6Ng01-292P03.g
ACCGA089451GA089452
length8591,133
definitionB6Ng01-292P03.b B6Ng01-292P03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagggaagtgtttaatttctttctttacttcttccctgaccaag
ttatcagtgagaagagagttgttcagtttctataggtatgtagatttttc
tgctgtttttattgctattgaagtctagccttaatccctggtgatctcag
gacgcatgggattatttcaattttcatttatctgttcaggcttgttttgt
gactgattatatggtcaattttggagaaggtttcatgtggtgctaagaag
aaggtatattcttttgtttaagggtgaaatgaatctgttaaatccatttg
gttcgtaacctctattagtttccctgtgtctctgtttagtttctgtttca
atggtttctccattgtggagagtgggttgttgaagtctctcactattatt
gtgtgaggttcaatgtgttttgagctttagtaaagtttctttaatgaata
tgggataccttgaatttggggcatagatgttccaaattgagactttctct
tggttgatatttcctttgatgagtatgaagtgtcctgcatcttagttgat
agctttttgttgaagtctattttattggatattagaatagcaactcctgc
ttgtttcttgggaccatttgcttggaagacttttttccaaccttttattc
tgaggtagtgtctgtctttgtcgttgaggtgtgttttttttttttccttc
cttttttgtatgcagcaaaatgctggatcctgcttatgtatccagtctct
tattttatgcctttttattgaggaattaattcacttgatattgagagtta
ttaaagacagatgattgttagttccttgtgtttgttgtttgtaaggtgga
gttatgtgt

gaattctataaatttacaagccgggcgtggtggcacacgcctttaatccc
agcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctg
gtctacagagtgagttccaggacagccaggactacacagagaaaccctgt
ctcgaaaaaccaaataaataaataaataaataaataaataaataaattta
caaatattaagtgtagaatagatacaacaaaaacatcctatacagattcc
agaaataaaaaaaactgtagggtacttacaagaagaaacaaaatttaaca
aatacctttggctccaattatagtaatgaaaccattcaattctggatcca
ctatataggtcaaaaatcagggttttgttcagcagtaagatggtgatatt
tcttttgaattcttaattaaacttttagcactagtagtctacattttact
ccaaattatatctcaaacggccttattgtcatcacaaagacaaaccatta
tacattatgataattcaaaagcatatttcagtaaacaccacaagtgaaca
aacatctctgttcttaatgactgagcttgacaggaatacaaaatgggaac
atgtcttttggatgggattacattatgaatttctaactttgttagttgat
aactataactatgaatgctgcaattattaatgtggataggtgtacgcatg
aaattggtaaataagggcccacaataagtcttacctacacaaaatcaatg
ggaaaacctaaacattattgaaataaattctttcagaatttggaaacaaa
tactcataataaattggtaagttttcaagaaaaaaaatggagaatctctg
tgaaaacaatgtagtttgtgggatttccatttattttgatgatactcttc
ctgctaactgggccaaactggatagttccttgaaagtttcatacatgtac
ctgtttatttgacttgatacacattcaccaagtgtgaagcttttctttgg
gacatttgtgaaacaatagagaacctgaattaaattatctacgatgtctg
atctataattaccgaatgggccattcatagccttaacaatattcgaagaa
actgttatgtaaatgtttagtcactgtagcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109172766_109173907
seq2: B6Ng01-292P03.g_66_1198 (reverse)

seq1  AAAGCTACAGTGAACTAACATTCACAT-ACATTTTCCTTTTGATATTTTG  49
      |||||||||||||   |||||| |||| ||| ||||  || || || |||
seq2  AAAGCTACAGTGACTAAACATTTACATAACAGTTTC--TTCGA-ATATTG  47

seq1  TTTAGCTTATTGATTGCCCATTTGGTATTTATAGATCAGACATCTGTAGA  99
      || ||  |||  || ||||||| |||| |||||||||||||||| |||||
seq2  TTAAGGCTATGAATGGCCCATTCGGTAATTATAGATCAGACATC-GTAGA  96

seq1  TAATTTAA-TCAGGTTCCTCTATTTGTTTTCCACAAATGTCCCAAAGAAA  148
      |||||||| ||||||| ||||| ||||||  |||||||||||||||||||
seq2  TAATTTAATTCAGGTT-CTCTA-TTGTTT--CACAAATGTCCCAAAGAAA  142

seq1  AGCTTTCACACTTGGTGAATGTGTTATCAAGTCAATTAAACAGGTACATG  198
      ||| ||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AGC-TTCACACTTGGTGAATGTG-TATCAAGTCAAATAAACAGGTACATG  190

seq1  TATGAAACTTTTCAAGGAACTATCCAGTTTGGCCCAGTTAGCAGGAAGAG  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAC-TTTCAAGGAACTATCCAGTTTGGCCCAGTTAGCAGGAAGAG  239

seq1  TATCATCAAAATAAATGGAAATCCCACAAACTACATTGTTTTCACAGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCAAAATAAATGGAAATCCCACAAACTACATTGTTTTCACAGAGA  289

seq1  TTCTCCATTTTTTTTCTTGAAAACTTACCAATTTATTATGAGTATTTGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATTTTTTTTCTTGAAAACTTACCAATTTATTATGAGTATTTGTT  339

seq1  TCCAAATTCTGAAAGAATTTATTTCAATAATGTTTAGGTTTTCCCATTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTCTGAAAGAATTTATTTCAATAATGTTTAGGTTTTCCCATTGA  389

seq1  TTTTGTGTAGGTAAGACTTATTGTGGGCCCTTATTTACCAATTTCATGCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTAGGTAAGACTTATTGTGGGCCCTTATTTACCAATTTCATGCG  439

seq1  TACACCTATCCACATTAATAATTGCAGCATTCATAGTTATAGTTATCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTATCCACATTAATAATTGCAGCATTCATAGTTATAGTTATCAAC  489

seq1  TAACAAAGTTAGAAATTCATAATGTAATCCCATCCAAAAGACATGTTCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTTAGAAATTCATAATGTAATCCCATCCAAAAGACATGTTCCC  539

seq1  ATTTTGTATTCCTGTCAAGCTCAGTCATTAAGAACAGAGATGTTTGTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATTCCTGTCAAGCTCAGTCATTAAGAACAGAGATGTTTGTTCA  589

seq1  CTTGTGGTGTTTACTGAAATATGCTTTTGAATTATCATAATGTATAATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTGTTTACTGAAATATGCTTTTGAATTATCATAATGTATAATGG  639

seq1  TTTGTCTTTGTGATGACAATAAGGCCGTTTGAGATATAATTTGGAGTAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTGTGATGACAATAAGGCCGTTTGAGATATAATTTGGAGTAAA  689

seq1  ATGTAGACTACTAGTGCTAAAAGTTTAATTAAGAATTCAAAAGAAATATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACTACTAGTGCTAAAAGTTTAATTAAGAATTCAAAAGAAATATC  739

seq1  ACCATCTTACTGCTGAACAAAACCCTGATTTTTGACCTATATAGTGGATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTACTGCTGAACAAAACCCTGATTTTTGACCTATATAGTGGATC  789

seq1  CAGAATTGAATGGTTTCATTACTATAATTGGAGCCAAAGGTATTTGTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGAATGGTTTCATTACTATAATTGGAGCCAAAGGTATTTGTTAA  839

seq1  ATTTTGTTTCTTCTTGTAAGTACCCTACAGTTTTTTTTATTTCTGGAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTCTTCTTGTAAGTACCCTACAGTTTTTTTTATTTCTGGAATC  889

seq1  TGTATAGGATGTTTTTGTTGTATCTATTCTACACTTAATATTTGTAAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGGATGTTTTTGTTGTATCTATTCTACACTTAATATTTGTAAATT  939

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTGGTTTTTCGAGACAGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTGGTTTTTCGAGACAGGG  989

seq1  TTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCT  1039

seq1  GGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATT  1089

seq1  AAAGGCGTGTGCCACCACGCCCGGCTTGTAAATTTATAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGTGCCACCACGCCCGGCTTGTAAATTTATAGAATTC  1133


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