BAC Information

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BAC

Clone NameB6Ng01-293G08
ChromosomeX (Build37)
Map Location 95,347,231 - 95,499,227
singlet/doubletdoublet
Overlap geneAr
Upstream geneEda2r, LOC668244
Downstream geneLOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293G08.bB6Ng01-293G08.g
ACCGA089788GA089789
length1,1801,129
definitionB6Ng01-293G08.b B6Ng01-293G08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,347,231 - 95,348,415)(95,498,106 - 95,499,227)
sequence
gaattctcaattctcctagaaagaaaagccgcatctggttgctaagggac
ttcggggtgaaagacgcagttttctttcccaggaagtcaccagtgacttg
ctctccggttagaggtcagccttgagaattcaacaaggcacatttagagc
aggtagatggggttactttagtggtaaacgccgggcaaagtttactctca
ctatttctcagcatgggctgactgtttgtgtgggccagttttctcttgaa
aagtctttactttctgtagattagaatacatcagaaagtctccgtttggg
gcttgcaccagacctgtaaagaaaagaaatgtactgtaaatgatagtttg
agcaggtttaagtttgactcacaagtgttacaaacagaacagaacagaac
tgggaggcattgtcctgctgcttgagtgtgctcacacatttatactgggg
acggaggaatagggcgccacattatattttgttcattttaaggacatact
tatagtttaaaacttgagttgctcgtgttaacaaattgagtaagaactgt
caatgacctatgaaccacaatgttgcctcacagttctaattaggacagga
gaaaagtggcgggcaattttgccttattaaacgtatttaccactgcttct
tgagcctcttagaggctagttgaaatgttttccccactaagttaagatta
tttttttcatctgataagatggagtattgacggagtaattaatggttgat
tttcctgaggtgttcatgtttctctatggatttatgtttgtgtctcaagt
ggttttctttcatttgtgatgttcgccaaatgtctttgtgagatgtacca
taattttttgtgacttaattctaacaatttgtattcttttattgttcttg
gttgttaggacagtgtccaaaaatgaaaaaggaggataggttttcataaa
tatacttttttttgagttgttgaagaaacaagtttattgtagttatattc
tatttggttttttaaagtttgtcttacagattttcaaagattcatttgat
agcaataatctttttcagttaagttagagtgtttattttttgagatgggc
tttactggtgggattaaaacgtcctccgtttatgagatagattaacttgg
cttggttaattttcaagctgtcaactgaga

gaattcactctgtaacctgggcaggtcctagatttgtaattcttctatct
cagcttcccaagtagctggaaatacaggcttttgctaccaggctttgttc
tctctttcacacacacaatagtatttaaagttctttgaggacagaaaggt
tgccacacccttatgccattgtagagtttcagagactaactagatttaca
gcagttgagaatttaagtatgaaatgggaatgaagtttagaaaacattct
gaaaaatcttttatattttcagactaccaagtcattctagtttgggaata
gtaagcagggattttctggtgttctacttcctaccacacatgataaggtg
cctcagacattatctgaatgctattcatagttgatcatgtactatagcac
atattgatctttttctttagcagaagtgaaaaaaagtaaggtaaagggtt
agaacctgtaataggattaaaaaaaatccctgactctatcatctggccat
aaaatggaaatcatactagaaggcagccagccattaggatgctagacgac
catagtaacagtaaccccaaactcagtcattaagaatcatcttcctgata
tgatcatagaacactcatgtgtgcatgcacacaagcacgcacacacacac
acacacacacacacacacacacacacacacacacacacacacgcacgcac
acacacacacttattttaaaagtcctctggtattccaatggttactttgt
tctgttttcccaagcacttatattgataagtttaaataattgaaaaggtc
ataactctgagatctatcacaagctgatgcactcatagtagaccataaac
tatattttctctaatcttttaaaataataattaaatatgtaaagaaagac
ataaaataaagagaagctgatcccctcaagatagtgtataaatgtgattt
aaaaaaccctactgcttttggctccaaagaaaaatgacatatctagaaca
gaccttaagccctaattagaaaaagtaagatctttactgtaaacttctat
catatctttactaagtaatcaatgtaatagtaaattgcattgtttgcata
aaacacctagaacacaggaagagaagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_95347231_95348415
seq2: B6Ng01-293G08.b_46_1225

seq1  GAATTCTCAATTCTCCTAGAAAGAAAAGCCGCATCTGGTTGCTAAGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTCTCCTAGAAAGAAAAGCCGCATCTGGTTGCTAAGGGAC  50

seq1  TTCGGGGTGAAAGACGCAGTTTTCTTTCCCAGGAAGTCACCAGTGACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGGTGAAAGACGCAGTTTTCTTTCCCAGGAAGTCACCAGTGACTTG  100

seq1  CTCTCCGGTTAGAGGTCAGCCTTGAGAATTCAACAAGGCACATTTAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGGTTAGAGGTCAGCCTTGAGAATTCAACAAGGCACATTTAGAGC  150

seq1  AGGTAGATGGGGTTACTTTAGTGGTAAACGCCGGGCAAAGTTTACTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATGGGGTTACTTTAGTGGTAAACGCCGGGCAAAGTTTACTCTCA  200

seq1  CTATTTCTCAGCATGGGCTGACTGTTTGTGTGGGCCAGTTTTCTCTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTCAGCATGGGCTGACTGTTTGTGTGGGCCAGTTTTCTCTTGAA  250

seq1  AAGTCTTTACTTTCTGTAGATTAGAATACATCAGAAAGTCTCCGTTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTACTTTCTGTAGATTAGAATACATCAGAAAGTCTCCGTTTGGG  300

seq1  GCTTGCACCAGACCTGTAAAGAAAAGAAATGTACTGTAAATGATAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACCAGACCTGTAAAGAAAAGAAATGTACTGTAAATGATAGTTTG  350

seq1  AGCAGGTTTAAGTTTGACTCACAAGTGTTACAAACAGAACAGAACAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTTAAGTTTGACTCACAAGTGTTACAAACAGAACAGAACAGAAC  400

seq1  TGGGAGGCATTGTCCTGCTGCTTGAGTGTGCTCACACATTTATACTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCATTGTCCTGCTGCTTGAGTGTGCTCACACATTTATACTGGGG  450

seq1  ACGGAGGAATAGGGCGCCACATTATATTTTGTTCATTTTAAGGACATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGAATAGGGCGCCACATTATATTTTGTTCATTTTAAGGACATACT  500

seq1  TATAGTTTAAAACTTGAGTTGCTCGTGTTAACAAATTGAGTAAGAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTAAAACTTGAGTTGCTCGTGTTAACAAATTGAGTAAGAACTGT  550

seq1  CAATGACCTATGAACCACAATGTTGCCTCACAGTTCTAATTAGGACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACCTATGAACCACAATGTTGCCTCACAGTTCTAATTAGGACAGGA  600

seq1  GAAAAGTGGCGGGCAATTTTGCCTTATTAAACGTATTTACCACTGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGCGGGCAATTTTGCCTTATTAAACGTATTTACCACTGCTTCT  650

seq1  TGAGCCTCTTAGAGGCTAGTTGAAATGTTTTCCCCACTAAGTTAAGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTCTTAGAGGCTAGTTGAAATGTTTTCCCCACTAAGTTAAGATTA  700

seq1  TTTTTTTCATCTGATAAGATGGAGTATTGACGGAGTAATTAATGGTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATCTGATAAGATGGAGTATTGACGGAGTAATTAATGGTTGAT  750

seq1  TTTCCTGAGGTGTTCATGTTTCTCTATGGATTTATGTTTGTGTCTCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGGTGTTCATGTTTCTCTATGGATTTATGTTTGTGTCTCAAGT  800

seq1  GGTTTTCTTTCATTTGTGATGTTCGCCAAATGTCTTTGTGAGATGTACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTTTCATTTGTGATGTTCGCCAAATGTCTTTGTGAGATGTACCA  850

seq1  TAATTTTTTGTGACTTAATTCTAACAATTTGTATTCTTTTATTGTTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTGTGACTTAATTCTAACAATTTGTATTCTTTTATTGTTCTTG  900

seq1  GTTGTTAGGACAGTGTCCAAAAATGAAAAAGGGAGGATAGGTTTTCATAA  950
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GTTGTTAGGACAGTGTCCAAAAATGAAAAA-GGAGGATAGGTTTTCAT-A  948

seq1  AATATAC-TTTTTTTGAGTTGTTGAAGAAAC-AGTTTATTGTAGTTTATA  998
      ||||||| ||||||||||||||||||||||| |||||||||||| |||||
seq2  AATATACTTTTTTTTGAGTTGTTGAAGAAACAAGTTTATTGTAG-TTATA  997

seq1  TTCTATTTGG-TTTTTAAAGTTTGTCTTACAGGATTTTCAAAGATTCATT  1047
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  TTCTATTTGGTTTTTTAAAGTTTGTCTTACA-GATTTTCAAAGATTCATT  1046

seq1  TGATAGCATTAAATCTTTTCCAGTTAAGTTAGAGTGTTTA-TTTTTGAGA  1096
      |||||||| | |||||||| |||||||||||||||||||| |||||||||
seq2  TGATAGCAAT-AATCTTTTTCAGTTAAGTTAGAGTGTTTATTTTTTGAGA  1095

seq1  TGGGTTTTACT-GTGGGA-TAAAAGGTCTTCGTTTTATGAGAATAGATTT  1144
      |||| |||||| |||||| ||||| ||| ||  |||||||| ||||||| 
seq2  TGGGCTTTACTGGTGGGATTAAAACGTCCTCCGTTTATGAG-ATAGATTA  1144

seq1  ACTTGGTATGGTTAATTTTTTCTAGGGCTGTCAACTAGAGA  1185
      ||||||  |||||||  ||||| |  |||||||||| ||||
seq2  ACTTGGCTTGGTTAA--TTTTCAA--GCTGTCAACT-GAGA  1180


seq1: chrX_95498106_95499227
seq2: B6Ng01-293G08.g_66_1194 (reverse)

seq1  AAGCTTCT----CTCTGTTCTAGGTG-TTTATGCAAAC-ATGCAATTTAC  44
      ||||||||    || ||||||||||| ||||||||||| |||||||||||
seq2  AAGCTTCTCTTCCTGTGTTCTAGGTGTTTTATGCAAACAATGCAATTTAC  50

seq1  TATTACATTGATTTACTTAGTAAGATTATGATAG-AGTTTACAGTAAAGA  93
      ||||||||||| |||||||||||   |||||||| |||||||||||||||
seq2  TATTACATTGA-TTACTTAGTAAAGATATGATAGAAGTTTACAGTAAAGA  99

seq1  TCTTAC-TTTTCTAATTAGGGCTTAAGGTCTGTTCTAGATATGTCATTTT  142
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTTTTCTAATTAGGGCTTAAGGTCTGTTCTAGATATGTCATTTT  149

seq1  TCTTTGGAGCCAAAAGCAGTAGGGTTTTTTAAATCACATTTATACACTAT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAGCCAAAAGCAGTAGGGTTTTTTAAATCACATTTATACACTAT  199

seq1  CTTTGAGGGATCAGCTTCTCTTTATTTTATGTCTTTCTTTACATATTTAA  242
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGGATCAGCTTCTCTTTATTTTATGTCTTTCTTTACATATTTAA  249

seq1  TTATTATTTTAAAAGATTAGAGAAAATATAGTTTATGGTCTACTATGAGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTAAAAGATTAGAGAAAATATAGTTTATGGTCTACTATGAGT  299

seq1  GCATCAGCTTGTGATAGATCTCAGAGTTATGACCTTTTCAATTATTTAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCTTGTGATAGATCTCAGAGTTATGACCTTTTCAATTATTTAAA  349

seq1  CTTATCAATATAAGTGCTTGGGAAAACAGAACAAAGTAACCATTGGAATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCAATATAAGTGCTTGGGAAAACAGAACAAAGTAACCATTGGAATA  399

seq1  CCAGAGGACTTTTAAAATAAGTGTGTGTGTGTGCGTGCGTGTGTGTGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGACTTTTAAAATAAGTGTGTGTGTGTGCGTGCGTGTGTGTGTGT  449

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCTTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCTTGT  499

seq1  GTGCATGCACACATGAGTGTTCTATGATCATATCAGGAAGATGATTCTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGCACACATGAGTGTTCTATGATCATATCAGGAAGATGATTCTTA  549

seq1  ATGACTGAGTTTGGGGTTACTGTTACTATGGTCGTCTAGCATCCTAATGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGAGTTTGGGGTTACTGTTACTATGGTCGTCTAGCATCCTAATGG  599

seq1  CTGGCTGCCTTCTAGTATGATTTCCATTTTATGGCCAGATGATAGAGTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCCTTCTAGTATGATTTCCATTTTATGGCCAGATGATAGAGTCA  649

seq1  GGGATTTTTTTTAATCCTATTACAGGTTCTAACCCTTTACCTTACTTTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTTTTAATCCTATTACAGGTTCTAACCCTTTACCTTACTTTTT  699

seq1  TTCACTTCTGCTAAAGAAAAAGATCAATATGTGCTATAGTACATGATCAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCTGCTAAAGAAAAAGATCAATATGTGCTATAGTACATGATCAA  749

seq1  CTATGAATAGCATTCAGATAATGTCTGAGGCACCTTATCATGTGTGGTAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATAGCATTCAGATAATGTCTGAGGCACCTTATCATGTGTGGTAG  799

seq1  GAAGTAGAACACCAGAAAATCCCTGCTTACTATTCCCAAACTAGAATGAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAACACCAGAAAATCCCTGCTTACTATTCCCAAACTAGAATGAC  849

seq1  TTGGTAGTCTGAAAATATAAAAGATTTTTCAGAATGTTTTCTAAACTTCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGTCTGAAAATATAAAAGATTTTTCAGAATGTTTTCTAAACTTCA  899

seq1  TTCCCATTTCATACTTAAATTCTCAACTGCTGTAAATCTAGTTAGTCTCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTCATACTTAAATTCTCAACTGCTGTAAATCTAGTTAGTCTCT  949

seq1  GAAACTCTACAATGGCATAAGGGTGTGGCAACCTTTCTGTCCTCAAAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTACAATGGCATAAGGGTGTGGCAACCTTTCTGTCCTCAAAGAA  999

seq1  CTTTAAATACTATTGTGTGTGTGAAAGAGAGAACAAAGCCTGGTAGCAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATACTATTGTGTGTGTGAAAGAGAGAACAAAGCCTGGTAGCAAA  1049

seq1  AGCCTGTATTTCCAGCTACTTGGGAAGCTGAGATAGAAGAATTACAAATC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATTTCCAGCTACTTGGGAAGCTGAGATAGAAGAATTACAAATC  1099

seq1  TAGGACCTGCCCAGGTTACAGAGTGAATTC  1122
      ||||||||||||||||||||||||||||||
seq2  TAGGACCTGCCCAGGTTACAGAGTGAATTC  1129


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