BAC Information

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BAC

Clone NameB6Ng01-293M13
ChromosomeX (Build37)
Map Location 89,701,786 - 89,781,879
singlet/doubletdoublet
Overlap geneMageb18, EG546347
Upstream geneEG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneLOC629568, LOC100042663, Rp23-438h3.2, Arx, Pola1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293M13.bB6Ng01-293M13.g
ACCGA090078GA090079
length1,1001,152
definitionB6Ng01-293M13.b B6Ng01-293M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,780,777 - 89,781,879)(89,701,786 - 89,702,870)
sequence
gaattctctctaagatgattcagaacaatctattctaaaatggataattc
tgcccaaaccagttgaatgttggttcccttcatgtaacagagagactcta
taccattattgtgaagtataggaaagaagagattaaaaataaacttccaa
aagtaaatgctagttaatttcatagtaattagaatttaaaaatgtttaaa
ttttctttctttagggtcttctttgaagatatttcagtgaatttaagtct
tatgcacaaggtaaagatgaacctcactttccagatatttgactttttgg
ccacatatacttttatacattagatattgactacctcactgtgtattggt
aatgaaattcatactttcatacatgaattgatgaaaaacatttcaatcta
ttgaatgataactcagcttgccaggctggatttttcatcacaccatcttt
atctcttatttataaagcaattatttcaacattattcttcattgcactat
tacactttctattttaaattgagaagaaaaagtttgaaatgaaagtacga
atactattgaaaatgctttggtctcataaatttcatataattgaggcaac
aaaaaagtctgctgaaaaatgttggtttctaactgtgtgtttatagactt
atgtcagtaaactgactgtctgtgaagaaagtaatataaagaatatatag
atatttgagaagactgtatccaagaggcaaaatagagaatttgaagctac
cctgttgcagaaaacacaacattttatgccctaatatagcctcttcatct
tggattgtaggcaggactgacatccaacttggatctttttgtctcaggca
tctgagttgtgggattataggtatatgtcaccaatccatgaactttaaac
tattgtctgattttccagctaatgaaaaggtagtgaaagcaaagttaaca
ggcaaattttcaaacaagctagctatgaatcacatgatagtgatgttctt
tatgctttaataatacccccaaaattcaactgtactggataccatagtag
ggataaggtggttaagcctggtgatcccagatttgtgtggatcttctgtg

gaattcagacctgcctttagtacacacttttaatcccaaacaatgacatc
taattgaaaggcagacaaagtgatgcatcagagaaagacttgacagaatg
agtcatagacagaatatgcccaacagcacaggaaaagagaggctacttga
agagtagtgaggcaaagagagttcagttcagttcagctcagttcaaatta
gttcactttagtgaagttcagttgagtgcagctgagctcagttcagtgtg
gagcagttgagttcagagcagttcagtttgtggagttcaggggaagtctt
tccaagcagaacaattcaatcagaaaatgggtgaagccaatttgaatcag
tcagcttggagaagagtttgagccagaacagctgagttaagcaagccagc
cagagttcagaaagagtttggtcaccagcacccacactgggccacttgta
attgcctgtgactccagttccagggttatcaaacaccttcttctgatttc
aaagggcacctgcatgtatgtggttcatatattgacaagaaaaaatgtgt
acacataaatataaatgaatgttttataaataccaaaggccacagttata
aaagtgaaaactaagctgagaataaactgcgaagtgcggactggagagat
ggctcagcagttaagagcactgactgttcttccagaggtcatgagttcaa
attccagcaaccacatggtggctcacaaccatctgtaatgagatctgatg
cccttttctggtgtgtctgaagacagctatagtgtacttatgtaccaagc
caagaaaatttaaaaataaataaataaattgcaaagtaagaaaactataa
tcatgatgaaccctcaacaattctttgtagtacaaaaatgttataatgaa
aaaattgaaatgggtgactttccatttgctactccctgtcagtttttcct
ttcactgtgagccttggagggtctactcacaagttttatagtggtttttg
tcctctggattctttttggggttctcaaactaaagatgagaaactgcaga
tcaatgagataaggatattttatctcctgaccaggaaacattttccatca
gcctacatgaacagctacatgcttctcacagcttaagctccttctaggta
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89780777_89781879
seq2: B6Ng01-293M13.b_50_1149 (reverse)

seq1  CACAG-AGAT-CACACAAATCTTGGGATCA-CAGGCTTAAACCACCTTAT  47
      ||||| |||| |||||||||| |||||||| ||||||| |||||||||||
seq2  CACAGAAGATCCACACAAATC-TGGGATCACCAGGCTT-AACCACCTTAT  48

seq1  CCCTAACCTATGGTATCCAGTACAGTTTGAATTTTGGGGGTAATTATTAA  97
      |||||  |||||||||||||||||| ||||||||||||||| ||||||||
seq2  CCCTA--CTATGGTATCCAGTACAG-TTGAATTTTGGGGGT-ATTATTAA  94

seq1  AGCATAAAGAACATCACTATCATGTGATTCATAGCTAGCTTGTTTGAAAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAGAACATCACTATCATGTGATTCATAGCTAGCTTGTTTGAAAA  144

seq1  TTTTGCCTGTTAACTTTGCTTTCACTACCTTTTCATTAGCTGGAAAATCA  197
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGCCTGTTAACTTTGCTTTCACTACCTTTTCATTAGCTGGAAAATCA  193

seq1  GACAATAGTTT-AAGTTCATGGATTGGTGACATATACCTATAATCCCACA  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGTTTAAAGTTCATGGATTGGTGACATATACCTATAATCCCACA  243

seq1  ACTCAGATGCCTGAGACAAAAAGATCCAAGTTGGATGTCAGTCCTGCCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGATGCCTGAGACAAAAAGATCCAAGTTGGATGTCAGTCCTGCCTA  293

seq1  CAATCCAAGATGAAGAGGCTATATTAGGGCATAAAATGTTGTGTTTTCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAGATGAAGAGGCTATATTAGGGCATAAAATGTTGTGTTTTCTG  343

seq1  CAACAGGGTAGCTTCAAATTCTCTATTTTGCCTCTTGGATACAGTCTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGTAGCTTCAAATTCTCTATTTTGCCTCTTGGATACAGTCTTCT  393

seq1  CAAATATCTATATATTCTTTATATTACTTTCTTCACAGACAGTCAGTTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTATATATTCTTTATATTACTTTCTTCACAGACAGTCAGTTTA  443

seq1  CTGACATAAGTCTATAAACACACAGTTAGAAACCAACATTTTTCAGCAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATAAGTCTATAAACACACAGTTAGAAACCAACATTTTTCAGCAGA  493

seq1  CTTTTTTGTTGCCTCAATTATATGAAATTTATGAGACCAAAGCATTTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTGTTGCCTCAATTATATGAAATTTATGAGACCAAAGCATTTTCA  543

seq1  ATAGTATTCGTACTTTCATTTCAAACTTTTTCTTCTCAATTTAAAATAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTCGTACTTTCATTTCAAACTTTTTCTTCTCAATTTAAAATAGA  593

seq1  AAGTGTAATAGTGCAATGAAGAATAATGTTGAAATAATTGCTTTATAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAATAGTGCAATGAAGAATAATGTTGAAATAATTGCTTTATAAAT  643

seq1  AAGAGATAAAGATGGTGTGATGAAAAATCCAGCCTGGCAAGCTGAGTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAAAGATGGTGTGATGAAAAATCCAGCCTGGCAAGCTGAGTTAT  693

seq1  CATTCAATAGATTGAAATGTTTTTCATCAATTCATGTATGAAAGTATGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATAGATTGAAATGTTTTTCATCAATTCATGTATGAAAGTATGAA  743

seq1  TTTCATTACCAATACACAGTGAGGTAGTCAATATCTAATGTATAAAAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTACCAATACACAGTGAGGTAGTCAATATCTAATGTATAAAAGTA  793

seq1  TATGTGGCCAAAAAGTCAAATATCTGGAAAGTGAGGTTCATCTTTACCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCCAAAAAGTCAAATATCTGGAAAGTGAGGTTCATCTTTACCTT  843

seq1  GTGCATAAGACTTAAATTCACTGAAATATCTTCAAAGAAGACCCTAAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAAGACTTAAATTCACTGAAATATCTTCAAAGAAGACCCTAAAGA  893

seq1  AAGAAAATTTAAACATTTTTAAATTCTAATTACTATGAAATTAACTAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTTAAACATTTTTAAATTCTAATTACTATGAAATTAACTAGCA  943

seq1  TTTACTTTTGGAAGTTTATTTTTAATCTCTTCTTTCCTATACTTCACAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTGGAAGTTTATTTTTAATCTCTTCTTTCCTATACTTCACAAT  993

seq1  AATGGTATAGAGTCTCTCTGTTACATGAAGGGAACCAACATTCAACTGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTATAGAGTCTCTCTGTTACATGAAGGGAACCAACATTCAACTGGT  1043

seq1  TTGGGCAGAATTATCCATTTTAGAATAGATTGTTCTGAATCATCTTAGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGAATTATCCATTTTAGAATAGATTGTTCTGAATCATCTTAGAG  1093

seq1  AGAATTC  1103
      |||||||
seq2  AGAATTC  1100

seq1: chrX_89701786_89702870
seq2: B6Ng01-293M13.g_139_1217

seq1  TGCATCAGAGAAAGACTTGACAGAATGAGTCATAGACAGAATATGCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGAGAAAGACTTGACAGAATGAGTCATAGACAGAATATGCCCAA  50

seq1  CAGCACAGGAAAAGAGAGGCTACTTGAAGAGTAGTGAGGCAAAGAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGGAAAAGAGAGGCTACTTGAAGAGTAGTGAGGCAAAGAGAGTT  100

seq1  CAGTTCAGTTCAGCTCAGTTCAAATTAGTTCACTTTAGTGAAGTTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTTCAGCTCAGTTCAAATTAGTTCACTTTAGTGAAGTTCAGTT  150

seq1  GAGTGCAGCTGAGCTCAGTTCAGTGTGGAGCAGTTGAGTTCAGAGCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGCTGAGCTCAGTTCAGTGTGGAGCAGTTGAGTTCAGAGCAGTT  200

seq1  CAGTTTGTGGAGTTCAGGGGAAGTCTTTCCAAGCAGAACAATTCAATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTGGAGTTCAGGGGAAGTCTTTCCAAGCAGAACAATTCAATCAG  250

seq1  AAAATGGGTGAAGCCAATTTGAATCAGTCAGCTTGGAGAAGAGTTTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGTGAAGCCAATTTGAATCAGTCAGCTTGGAGAAGAGTTTGAGC  300

seq1  CAGAACAGCTGAGTTAAGCAAGCCAGCCAGAGTTCAGAAAGAGTTTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCTGAGTTAAGCAAGCCAGCCAGAGTTCAGAAAGAGTTTGGTC  350

seq1  ACCAGCACCCACACTGGGCCACTTGTAATTGCCTGTGACTCCAGTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACCCACACTGGGCCACTTGTAATTGCCTGTGACTCCAGTTCCAG  400

seq1  GGTTATCAAACACCTTCTTCTGATTTCAAAGGGCACCTGCATGTATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCAAACACCTTCTTCTGATTTCAAAGGGCACCTGCATGTATGTGG  450

seq1  TTCATATATTGACAAGAAAAAATGTGTACACATAAATATAAATGAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATATTGACAAGAAAAAATGTGTACACATAAATATAAATGAATGTT  500

seq1  TTATAAATACCAAAGGCCACAGTTATAAAAGTGAAAACTAAGCTGAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATACCAAAGGCCACAGTTATAAAAGTGAAAACTAAGCTGAGAAT  550

seq1  AAACTGCGAAGTGCGGACTGGAGAGATGGCTCAGCAGTTAAGAGCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCGAAGTGCGGACTGGAGAGATGGCTCAGCAGTTAAGAGCACTGA  600

seq1  CTGTTCTTCCAGAGGTCATGAGTTCAAATTCCAGCAACCACATGGTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCCAGAGGTCATGAGTTCAAATTCCAGCAACCACATGGTGGCT  650

seq1  CACAACCATCTGTAATGAGATCTGATGCCCTTTTCTGGTGTGTCTGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTGTAATGAGATCTGATGCCCTTTTCTGGTGTGTCTGAAGA  700

seq1  CAGCTATAGTGTACTTATGTACCAAGCCAAGAAAATTTAAAAATAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAGTGTACTTATGTACCAAGCCAAGAAAATTTAAAAATAAATAA  750

seq1  ATAAATTGCAAAGTAAGAAAACTATAATCATGATGAACCCTCAAACAATT  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAAATTGCAAAGTAAGAAAACTATAATCATGATGAACCCTC-AACAATT  799

seq1  CTTTGTAGTACAAAAATGTTATAATGAAAAAATTGAAAT-GGTGACTTTC  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTGTAGTACAAAAATGTTATAATGAAAAAATTGAAATGGGTGACTTTC  849

seq1  CATTTGCTACTCCCTGTCAGTTTTTCC-TTCACTGTGAGCCTTTGGAGGG  898
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CATTTGCTACTCCCTGTCAGTTTTTCCTTTCACTGTGAGCC-TTGGAGGG  898

seq1  TCTACTCACAAGTTTTATAGTGGTTTTTGTCCTCTGGATTC-TTTTGGGG  947
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTACTCACAAGTTTTATAGTGGTTTTTGTCCTCTGGATTCTTTTTGGGG  948

seq1  TTCTCCAAACAAAAGATTGAAGAAAGGCAAGATC-ATGAGATTAGGATA-  995
      |||| ||||| ||||||   |||||    ||||| ||||||| |||||| 
seq2  TTCT-CAAACTAAAGAT--GAGAAACTGCAGATCAATGAGATAAGGATAT  995

seq1  TTTATCTCCCTGACCCAAGAAAACATTTT-CATCAGGCTACATTGAACCA  1044
      ||||||| |||||||  || ||||||||| |||||| ||||| |||| ||
seq2  TTTATCT-CCTGACC--AGGAAACATTTTCCATCAGCCTACA-TGAA-CA  1040

seq1  GCTACATGCCTCTCCACAAGCTAAAGCTCCTTCTAGGTAGA  1085
      ||||||||| ||| ||| |||| ||||||||||||||||||
seq2  GCTACATGCTTCT-CAC-AGCTTAAGCTCCTTCTAGGTAGA  1079