BAC Information

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BAC

Clone NameB6Ng01-293P13
ChromosomeX (Build37)
Map Location 42,036,046 - 42,187,008
singlet/doubletdoublet
Overlap geneWdr40b
Upstream geneLOC100039987, LOC637141, Wdr40c
Downstream geneLOC665585, 1110059M19Rik, LOC100040038, EG385346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293P13.bB6Ng01-293P13.g
ACCGA090222GA090223
length1,0251,088
definitionB6Ng01-293P13.b B6Ng01-293P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,186,431 - 42,187,008)(42,036,046 - 42,036,628)
sequence
gaattccagaagtttataacctgtgacagggtgcaacaaaacagaataac
caagttgtttcaagattacatggctaattatagcctgggacttaatttta
atacagtgctgtgacggtctatatgttttcttggttaatggcaatgtcac
aatgtggttacaccaggattaatatcagggcttgttgctggtgtctctat
gatccttccaagaactagtagtataggtgagaaaatagaaaaatgaaaat
ttatactgatggaagtgttgcttatgacaatctctggacactgtgcctga
agtaaataaatggtttcttcagaaacagggacttccgggaccaaacaatc
acaatatcaataacttctaatatattgctttagagtgtctgggaaagcct
tgaccaaaaaaattcagagcttttcatgactggtattgcgtcttttccta
gatggaatttggattttagagggagcattgtcagtccaaatttgagaatt
tcatttaaacaatgtatgttatttataaataggtgtatgtgctatatatt
tttgtttttaaaatataaataattagtattatgagtctttgtgacttttt
tgggcacccttgttgttattttatcctcctccttctgtatttatctcttc
acaattagagtcctgtctctttgagcaataaaattacttgtgtcttgatt
tttgtgtgtgggtgggagaaaacaggataatcaatctctaaaagtatgcc
tatgaactacaatgacttacatggcatgacaatcctaaaatagcattagt
aagtggcatatgtacctttgtcctaactaactgatcgctaatcagactgc
agatccactcaacaaggagatcattcctaacaaaccagttagcaaattta
taaaactgataataagcgcctttaataaaacaccttaataaatggcatat
gcctaattacgctctaaatatctgttttcatcccccacaaataagtatag
tcctcacttctcatcagaaactttt

gaattctcgtcagaggaatctcaaatggctgaaaaacacataaagaaaca
tttatcatcttgaatcatcagggaaatccaaatcaaaacgtctctgagat
tccaccttacagaatcagtatggctaagatgaaaaattcaagtgactgtg
catactggcaaggatgtggagaaagatgaactattcctccattgctggtg
ggagtgcaaactggtacaactctggagattattcttgaaattcctcagaa
aattggaaatagctttacccgaagacccagccataccactcctgggcaaa
tacctaaaagatgatctaccataccacaatgacacgggctccactatttt
catagcagccttatttataacagctagaagcttaaagcaacctacatgac
ccccaatcaaagaatggatacagaaaatgcaatttatttatgcaatgaaa
tactactttgcagttaaaacgaggacatcatgaattttgtgagaaaatgg
atagaactagacaatatccatagtgacataacccacacccaaaatggcat
gcatcgtatgtattcatttgtaagtggatattagtcaaaaatttcagagt
atccatgatataactcacagacttcaggaagtttaacaagaaggaaggcc
caagtgtggttacctcaacccaacttaaaaggatagcaaaatattcagag
gaggcaggagtggaggaaacttggtgagattggataggaaaaaggcaaaa
ggaagggcaggatcaagtatgtgaatgtacagagggaatctctagaaagt
ctcagagtcctaggatgtaagagactaccaggactcaatgtggatgacat
tagtcaaaatgcccaacaatgggtaggtgggaactggaagagaccacttg
caatagatacacatggggccccatttgaggaatggggacaccaacctatc
ttcaaaattttaactcagaattgttttgtctaaaaagaaatgcagaggaa
aaatgagcagagtgttcgcaactctatttcatacaaatgtatttaattta
gtaccccaaacaactcacattaaaacatatgtttcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42186431_42187008
seq2: B6Ng01-293P13.b_51_628 (reverse)

seq1  TACTAATTATTTATATTTTAAAAACAAAAATATATAGCACATACACCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTATTTATATTTTAAAAACAAAAATATATAGCACATACACCTAT  50

seq1  TTATAAATAACATACATTGTTTAAATGAAATTCTCAAATTTGGACTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAACATACATTGTTTAAATGAAATTCTCAAATTTGGACTGACA  100

seq1  ATGCTCCCTCTAAAATCCAAATTCCATCTAGGAAAAGACGCAATACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCCTCTAAAATCCAAATTCCATCTAGGAAAAGACGCAATACCAGT  150

seq1  CATGAAAAGCTCTGAATTTTTTTGGTCAAGGCTTTCCCAGACACTCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAGCTCTGAATTTTTTTGGTCAAGGCTTTCCCAGACACTCTAAA  200

seq1  GCAATATATTAGAAGTTATTGATATTGTGATTGTTTGGTCCCGGAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATATTAGAAGTTATTGATATTGTGATTGTTTGGTCCCGGAAGTCC  250

seq1  CTGTTTCTGAAGAAACCATTTATTTACTTCAGGCACAGTGTCCAGAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGAAGAAACCATTTATTTACTTCAGGCACAGTGTCCAGAGATT  300

seq1  GTCATAAGCAACACTTCCATCAGTATAAATTTTCATTTTTCTATTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGCAACACTTCCATCAGTATAAATTTTCATTTTTCTATTTTCTC  350

seq1  ACCTATACTACTAGTTCTTGGAAGGATCATAGAGACACCAGCAACAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATACTACTAGTTCTTGGAAGGATCATAGAGACACCAGCAACAAGCC  400

seq1  CTGATATTAATCCTGGTGTAACCACATTGTGACATTGCCATTAACCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTAATCCTGGTGTAACCACATTGTGACATTGCCATTAACCAAGA  450

seq1  AAACATATAGACCGTCACAGCACTGTATTAAAATTAAGTCCCAGGCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATAGACCGTCACAGCACTGTATTAAAATTAAGTCCCAGGCTATA  500

seq1  ATTAGCCATGTAATCTTGAAACAACTTGGTTATTCTGTTTTGTTGCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCATGTAATCTTGAAACAACTTGGTTATTCTGTTTTGTTGCACCC  550

seq1  TGTCACAGGTTATAAACTTCTGGAATTC  578
      ||||||||||||||||||||||||||||
seq2  TGTCACAGGTTATAAACTTCTGGAATTC  578


seq1: chrX_42036046_42036628
seq2: B6Ng01-293P13.g_583_1157

seq1  ATATCCATAGTGACATAACCCACACCCAAAATGGCATGCATCGTATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATAGTGACATAACCCACACCCAAAATGGCATGCATCGTATGTAT  50

seq1  TCATTTGTAAGTGGATATTAGTCAAAAATTTCAGAGTATCCATGATATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTAAGTGGATATTAGTCAAAAATTTCAGAGTATCCATGATATAA  100

seq1  CTCACAGACTTCAGGAAGTTTAACAAGAAGGAAGGCCCAAGTGTGGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGACTTCAGGAAGTTTAACAAGAAGGAAGGCCCAAGTGTGGTTAC  150

seq1  CTCAACCCAACTTAAAAGGATAGCAAAATATTCAGAGGAGGCAGGAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCAACTTAAAAGGATAGCAAAATATTCAGAGGAGGCAGGAGTGG  200

seq1  AGGAAACTTGGTGAGATTGGATAGGAAAAAGGCAAAAGGAAGGGCAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTTGGTGAGATTGGATAGGAAAAAGGCAAAAGGAAGGGCAGGAT  250

seq1  CAAGTATGTGAATGTACAGAGGGAATCTCTAGAAAGTCTCAGAGTCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGTGAATGTACAGAGGGAATCTCTAGAAAGTCTCAGAGTCCTAG  300

seq1  GATGTAAGAGACTACCAGGACTCAATGTGGATGACATTAGTCAAAATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGAGACTACCAGGACTCAATGTGGATGACATTAGTCAAAATGCC  350

seq1  CAACAATGGGTAGGT-GGAACTGGAAGAGACCACTTGCAATAGATACACA  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAACAATGGGTAGGTGGGAACTGGAAGAGACCACTTGCAATAGATACACA  400

seq1  T-GGGCCCCATTTGAGGGATGGGGACACCAACCTATCTTCAAAATTTTTA  448
      | ||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  TGGGGCCCCATTTGAGGAATGGGGACACCAACCTATCTTCAAAA-TTTTA  449

seq1  ACTCAGAATTGTTTTTGTCT-AAAAGAAATGCAGAGGAAAAATGGAGCAG  497
      ||||||||||| |||||||| |||||||||||||||||||||| ||||||
seq2  ACTCAGAATTG-TTTTGTCTAAAAAGAAATGCAGAGGAAAAAT-GAGCAG  497

seq1  AGTGTTCGCAACTCTATTTCAATAACAAAATTGTAATTTAATTTTAGTTA  547
      |||||||||||||||||||||   |||||  ||| |||||| ||||| ||
seq2  AGTGTTCGCAACTCTATTTCA--TACAAA--TGT-ATTTAA-TTTAG-TA  540

seq1  CCCCAAACAACTCACATTAAAACATATGTTTTCACA  583
      |||||||||||||||||||||||||||| |||||||
seq2  CCCCAAACAACTCACATTAAAACATATG-TTTCACA  575


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