BAC Information

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BAC

Clone NameB6Ng01-294B02
ChromosomeX (Build37)
Map Location 74,981,551 - 75,099,391
singlet/doubletdoublet
Overlap geneLOC667606, Prkx, Pbsn
Upstream geneLOC385474, EG436208, LOC546331, LOC100041212, Tbl1x, EG628893
Downstream geneOTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik, LOC667700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294B02.bB6Ng01-294B02.g
ACCGA090293GA090294
length1,1431,123
definitionB6Ng01-294B02.b B6Ng01-294B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,098,254 - 75,099,391)(74,981,551 - 74,982,691)
sequence
gaattctactgtgtccagtttactgccatgtttttggtcatgtgaacaat
gtggtttgtgccaacattagagcagagttcacaagtgcattttgcctccc
cagtattgctgatgaatccatggttcaggttcaagggtgttgaaaacttg
attgaaaatggtcagacttgatattcttccagtatatctgattggaggaa
ctgataatagatatcagatttaaacctctaccattccagttaagataata
tgatagcatcttgttcttcatcttcctttttcttaatagggacataaaac
caatgaataaaaatatacctgaaacatgggataggcactgggcattggaa
atgacaataaaagtaaattttccatccctagtaaagttctccaggaacct
atttgtatactaaatgacacaatgtcaatgtcagtgcacaactgccaact
gggatgcagaacactgctcacgccaaccatcctgaaagccaactataaaa
agcagagagatactctgcaccttttcagtgaggtccagatacccacagag
cagagacagtcgctcacacatgatgagggtcatcatcctcctgctcacac
tgcatgtgctaggcgtctccagtgtgatgagtctcaaaaagaaggtagca
gacctgtgtggaagggggctgtatgtggtgggcatgttgggcagagacaa
acagacagagagaggcttgggagggggctttgtgcaggtgggtggcgaca
gcaggagacagggaggcagatgcagaaagactttaaagggggaaacgaat
gttctggaacttggtatttgctaagtctggtaatagagaataacaaatgt
gttggggggacatagttgagtctcataaatgcttttctgagagaaaaagc
agaaggacaaataccaagagatagaaacagagataaatgagagagttcct
ggagaatttaactagggatggacaactaccctctggaagtgctactcttt
acatcagaatggagagagacaaagaaagagagagtgatctaagggtggtt
ttctgaagatagaagtcacaaagaaaggccaagaagaccaaggaccgaga
gatattgttcttctgaagaatagattttggtgtgtgtcctttg
gaattcaacagaaaggctagggatttgtcaggacagaaaccccaattttt
ccctcccaaaataaggtttttttttgttttgttttgacacattttttttt
ttttttacataaccctggctgtcctggaattcattatgtagaccaagcta
ccttcaagatcacagtcattcacctaggattaaaggcatgagccaccagg
tcccattgcaaaataagatttaaacctacttgttggagctgaagacagta
ctaggtgcttaagagcactggctcttctttcagaggacctggattcaatt
tctggcaccaacacagcagctctctctgatgtgtatgtattgtatctctt
ttattctgatcatatatccagtgaacagcctaaaacctctctctttctga
ggccaatgttaatgaatatactttcttattgagagctttatgtcaggaga
aagttaagtgtagaatcaaactaatcaaacctaaaatagaaggctgaatg
aacatagtaagtcaaaagcaatggggcatctccagtagaagattgagtca
gtcccttaaacaaggaggtagggtgttagccctcgtagtttcccatcctt
tctgaataaacaaaagaaagtagttggaaaatctatgtgtaaggaattgg
aacttttcatgaataactttctgaacataccccatcagcatcataattaa
attgtaagctaaaattatttactttaaatgttacagataaccatagttta
ctgtgtatacttttacgaggttaagaaaatattttctttataaaatatat
ttcatttttaatgttatctctccttgggctgaaagttaacatgactccat
aaatgtataaatattatttataaatatagttgcaaatttcaattaatgta
gtaataaaatagtttttttttccagtatcatggccattaatgttagaaaa
gcagcacttgtcaagcctgccctcaaggaactcagcgcaaaaggcacatc
atcacctccctcccaatgcactcttacactgttcacaagtacaaaccctt
acacccccccccacacaccccattctctttgtctccagtctctcaagtct
gtctctttcagctgctctcgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_75098254_75099391
seq2: B6Ng01-294B02.b_48_1190 (reverse)

seq1  CAAAG---ACACACCAAAAACCTATCTTCAGA--GACATTATTCTCTCTG  45
      |||||   ||||||||||| |   ||||||||   ||| || |||||| |
seq2  CAAAGGACACACACCAAAATCTATTCTTCAGAAGAACAATA-TCTCTCGG  49

seq1  T-CTTTGTC-TCTTGGCCTTTCTTTGTGAC-TCTATC-TCAGAAAACCAC  91
      | ||| ||| |||||||||||||||||||| |||||| ||||||||||||
seq2  TCCTTGGTCTTCTTGGCCTTTCTTTGTGACTTCTATCTTCAGAAAACCAC  99

seq1  CCTTTAGATCACTCTCTCTTTCTTTGTCTCTCTCCATTCCTGATGTAAAG  141
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CC-TTAGATCACTCTCTCTTTCTTTGTCTCTCTCCATT-CTGATGTAAAG  147

seq1  AGTAGCAACTTCCAGAGGGTAGTTGTCCATCCCTAGTTAAATTCTCCAGG  191
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGC-ACTTCCAGAGGGTAGTTGTCCATCCCTAGTTAAATTCTCCAGG  196

seq1  AACTCTCTCATTTATCTCTGTTTCTATCTCTTGGTATTTGTCCTTCTGCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTCATTTATCTCTGTTTCTATCTCTTGGTATTTGTCCTTCTGCT  246

seq1  TTTTCTCTCAGAAAAGCATTTATGAGACTCAACTATGTCCCCCCAACACA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCAGAAAAGCATTTATGAGACTCAACTATGTCCCCCCAACACA  296

seq1  TTTGTTATTCTCTATTACCAGACTTAGCAAATACCAAGTTCCAGAACATT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTCTCTATTACCAGACTTAGCAAATACCAAGTTCCAGAACATT  346

seq1  CGTTTCCCCCTTTAAAGTCTTTCTGCATCTGCCTCCCTGTCTCCTGCTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCCCCTTTAAAGTCTTTCTGCATCTGCCTCCCTGTCTCCTGCTGT  396

seq1  CGCCACCCACCTGCACAAAGCCCCCTCCCAAGCCTCTCTCTGTCTGTTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCCACCTGCACAAAGCCCCCTCCCAAGCCTCTCTCTGTCTGTTTG  446

seq1  TCTCTGCCCAACATGCCCACCACATACAGCCCCCTTCCACACAGGTCTGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCCAACATGCCCACCACATACAGCCCCCTTCCACACAGGTCTGC  496

seq1  TACCTTCTTTTTGAGACTCATCACACTGGAGACGCCTAGCACATGCAGTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTTTTGAGACTCATCACACTGGAGACGCCTAGCACATGCAGTG  546

seq1  TGAGCAGGAGGATGATGACCCTCATCATGTGTGAGCGACTGTCTCTGCTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGAGGATGATGACCCTCATCATGTGTGAGCGACTGTCTCTGCTC  596

seq1  TGTGGGTATCTGGACCTCACTGAAAAGGTGCAGAGTATCTCTCTGCTTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTATCTGGACCTCACTGAAAAGGTGCAGAGTATCTCTCTGCTTTT  646

seq1  TATAGTTGGCTTTCAGGATGGTTGGCGTGAGCAGTGTTCTGCATCCCAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGGCTTTCAGGATGGTTGGCGTGAGCAGTGTTCTGCATCCCAGT  696

seq1  TGGCAGTTGTGCACTGACATTGACATTGTGTCATTTAGTATACAAATAGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTGTGCACTGACATTGACATTGTGTCATTTAGTATACAAATAGG  746

seq1  TTCCTGGAGAACTTTACTAGGGATGGAAAATTTACTTTTATTGTCATTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAGAACTTTACTAGGGATGGAAAATTTACTTTTATTGTCATTTC  796

seq1  CAATGCCCAGTGCCTATCCCATGTTTCAGGTATATTTTTATTCATTGGTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCAGTGCCTATCCCATGTTTCAGGTATATTTTTATTCATTGGTT  846

seq1  TTATGTCCCTATTAAGAAAAAGGAAGATGAAGAACAAGATGCTATCATAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCCCTATTAAGAAAAAGGAAGATGAAGAACAAGATGCTATCATAT  896

seq1  TATCTTAACTGGAATGGTAGAGGTTTAAATCTGATATCTATTATCAGTTC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAACTGGAATGGTAGAGGTTTAAATCTGATATCTATTATCAGTTC  946

seq1  CTCCAATCAGATATACTGGAAGAATATCAAGTCTGACCATTTTCAATCAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATCAGATATACTGGAAGAATATCAAGTCTGACCATTTTCAATCAA  996

seq1  GTTTTCAACACCCTTGAACCTGAACCATGGATTCATCAGCAATACTGGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACACCCTTGAACCTGAACCATGGATTCATCAGCAATACTGGGG  1046

seq1  AGGCAAAATGCACTTGTGAACTCTGCTCTAATGTTGGCACAAACCACATT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAATGCACTTGTGAACTCTGCTCTAATGTTGGCACAAACCACATT  1096

seq1  GTTCACATGACCAAAAACATGGCAGTAAACTGGACACAGTAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATGACCAAAAACATGGCAGTAAACTGGACACAGTAGAATTC  1143

seq1: chrX_74981551_74982691
seq2: B6Ng01-294B02.g_67_1189

seq1  GAATTCAACAGAAAGGCTAGGGATTTGTCAGGACAGAAACCCCAATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAAAGGCTAGGGATTTGTCAGGACAGAAACCCCAATTTTT  50

seq1  CCCTCCCAAAATAAGGTTTTTTTTTGTTTTGTTTTGACACATTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCAAAATAAGGTTTTTTTTTGTTTTGTTTTGACACATTTTTTTTT  100

seq1  TTTTTTACATAACCCTGGCTGTCCTGGAATTCATTATGTAGACCAAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACATAACCCTGGCTGTCCTGGAATTCATTATGTAGACCAAGCTA  150

seq1  CCTTCAAGATCACAGTCATTCACCTAGGATTAAAGGCATGAGCCACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGATCACAGTCATTCACCTAGGATTAAAGGCATGAGCCACCAGG  200

seq1  TCCCATTGCAAAATAAGATTTAAACCTACTTGTTGGAGCTGAAGACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGCAAAATAAGATTTAAACCTACTTGTTGGAGCTGAAGACAGTA  250

seq1  CTAGGTGCTTAAGAGCACTGGCTCTTCTTTCAGAGGACCTGGATTCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGCTTAAGAGCACTGGCTCTTCTTTCAGAGGACCTGGATTCAATT  300

seq1  TCTGGCACCAACACAGCAGCTCTCTCTGATGTGTATGTATTGTATCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACCAACACAGCAGCTCTCTCTGATGTGTATGTATTGTATCTCTT  350

seq1  TTATTCTGATCATATATCCAGTGAACAGCCTAAAACCTCTCTCTTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGATCATATATCCAGTGAACAGCCTAAAACCTCTCTCTTTCTGA  400

seq1  GGCCAATGTTAATGAATATACTTTCTTATTGAGAGCTTTATGTCAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATGTTAATGAATATACTTTCTTATTGAGAGCTTTATGTCAGGAGA  450

seq1  AAGTTAAGTGTAGAATCAAACTAATCAAACCTAAAATAGAAGGCTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGTGTAGAATCAAACTAATCAAACCTAAAATAGAAGGCTGAATG  500

seq1  AACATAGTAAGTCAAAAGCAATGGGGCATCTCCAGTAGAAGATTGAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTAAGTCAAAAGCAATGGGGCATCTCCAGTAGAAGATTGAGTCA  550

seq1  GTCCCTTAAACAAGGAGGTAGGGTGTTAGCCCTCGTAGTTTCCCATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTAAACAAGGAGGTAGGGTGTTAGCCCTCGTAGTTTCCCATCCTT  600

seq1  TCTGAATAAACAAAAGAAAGTAGTTGGAAAATCTATGTGTAAGGAATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAAACAAAAGAAAGTAGTTGGAAAATCTATGTGTAAGGAATTGG  650

seq1  AACTTTTCATGAATAACTTTCTGAACATACCCCATCAGCATCATAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCATGAATAACTTTCTGAACATACCCCATCAGCATCATAATTAA  700

seq1  ATTGTAAGCTAAAATTATTTACTTTAAATGTTACAGATAACCATAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGCTAAAATTATTTACTTTAAATGTTACAGATAACCATAGTTTA  750

seq1  CTGTGTATACTTTTACGAGGTTAAGAAAATATTTTCTTTATAAAATATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATACTTTTACGAGGTTAAGAAAATATTTTCTTTATAAAATATAT  800

seq1  TTCATTTTTAATGTTATCTCTCCTTGGGCTGAAAGTTAACATGACTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTAATGTTATCTCTCCTTGGGCTGAAAGTTAACATGACTCCAT  850

seq1  AAATGTATAAATATTATTTATAAATATAGTTGCAAATTTCAATTAATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATAAATATTATTTATAAATATAGTTGCAAATTTCAATTAATGTA  900

seq1  GTAATAAAATAGTTTTTTTTTCCAGTATCAATGGCCATTAATGTTAG-AA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GTAATAAAATAGTTTTTTTTTCCAGTATC-ATGGCCATTAATGTTAGAAA  949

seq1  AGCAGGCACTTGTCAAGCCTGCCCTC-AGGAACTCAGCGCCAAAAGGCAC  998
      |||| ||||||||||||||||||||| |||||||||||| ||||||||||
seq2  AGCA-GCACTTGTCAAGCCTGCCCTCAAGGAACTCAGCG-CAAAAGGCAC  997

seq1  ATCATCACCTCCCTTCCCCAAATGCCACTCTTTACACTGTTTCCACAAGT  1048
      ||||||||||||||   || |||| ||||| ||||||||||  |||||| 
seq2  ATCATCACCTCCCT---CCCAATG-CACTC-TTACACTGTT--CACAAG-  1039

seq1  TACAAAACCCTTACCAACCCCCCCCCCAACACACCCCCATTCTCTTTGTC  1098
      ||| ||||||||||  ||||||||||  ||||| ||||||||||||||||
seq2  TAC-AAACCCTTAC--ACCCCCCCCC--ACACA-CCCCATTCTCTTTGTC  1083

seq1  TTCCAGTCTCTC-AGTCTGTCTCTTTCAGTCTGGCTCTCTGACT  1141
       ||||||||||| |||||||||||||||| || |||||| ||||
seq2  -TCCAGTCTCTCAAGTCTGTCTCTTTCAG-CT-GCTCTC-GACT  1123