BAC Information

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BAC

Clone NameB6Ng01-295P16
ChromosomeX (Build37)
Map Location 39,959,494 - 40,102,013
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295P16.bB6Ng01-295P16.g
ACCGA091708GA091709
length1,1071,163
definitionB6Ng01-295P16.b B6Ng01-295P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,959,494 - 39,960,601)(40,100,863 - 40,102,013)
sequence
gaattctctttcctgaatagcttttccacagaatcacatcagttgttttg
agttgattgatcgcagtactaagtgttctattttaagttaaaaataaccc
acaaatgaatcacatatatgcatcttttctctctccactcccctatataa
atacattcacacccttccacatttccataaataatgatccttttctttgg
cttctgtaagatcttgaatcatagaaagttaaattgttctaagaacttga
atgtctgatctactcatttctaatagaactttgttaattttatccttttt
tccagaccttcccactcctcaatttattttttaacttgactcagatgatt
tcaatttctggagtgaggcagggacagaaacagagagaacttgagtaggt
gcatctctggcattttaaagagcaccaatggaggtggggagcggtattag
aactaatgactaatgtgttactttaatttttaaattttccctgttatact
tagattcacatgctatggaaaatgaagctactagaatatcttaatagtaa
tccatggcaccaattgcttatgtaactgtgaccctccatttgttcctaat
gggacccacgatttccattcaaggagccagtatgctcaaaggaaataact
cttttcattgagaaaattccatctctcctttttgagcaagtacacacaca
cacacacacacacacacacacacaaatatactactcatttctggacaatg
tgactgaagaaagaagtctactggcatctttgtttgatttttggacattt
cactatatgagatgattaagccttattgttgaaaatacttttagacagca
ttgggttatttttagcagaaaccattctccctgatgcattaatcaatgtt
gaaattctcaatattactctaattactttgaaaccatcattagagttaca
ggtctgtaaaatattagagcatagtcctttcaagggattgtctagcctct
ttaccttcttaacccaatcaacttctttgtgtacagactaagaaaaaagt
atcaacatgctggaaataatattgtatgtctatatctcttctacatgtca
ttactta

gaattctcagtttagttctataccccattttttgattggtttttatctga
tgtggggttagtgaagatatttttccccaatctgtaggttgccaattttt
attgtgatatatatacacacatatatatatattctatactgcaatcacat
aggtttaagcctcctgaacacaggtcaagatatcaagatagtaatcaaat
aatgacccttcagacagttaatggtgtcttgtctcttcccaggtccagag
atatgacctggataccattctttaaacactaattagagtctagaactttg
atgcttattttttctaccaactgcagattttgagggctgaatctagacat
aatattctctaaaccagctaacattaaattatctacctaaaaaatgtcct
agcaatgtcaagtacataatgcaatattagtgaaattgggagtgacttaa
atactttaaattgtctacttatagctaaattaatagcttcatatcagtat
gatttaactctattagaatgttagtatcaaatgactgcagagatgtaaaa
aatggttaaaaatctcttgatcatttaataaaacataatgtgaaacgttt
taggaaacacgaaaaatatatttatttcaagtgtaaaatcccagaatttg
gatgtctgaataaagcatgaggattacaaatttgggccaagcttgggtta
cataagaaaccatatatttatcttatgattatgctaatagacatgtaaca
tttaaaaaaattttaaatactaaattgtattttctcagagtaaagttata
aagtttaaaaactatacttaatgagttaaacatcaatagacggtacattc
aaatgccatacaaatgcatttaaatgtgttttttatcatgctaaggagtt
tattaactctaggttccttttcttcttcatgcaaaatttcatgttgaggg
gggaaaataagttgtagacgcatggtctgtttacacaatagtttacactt
gatgctaagtgccaccaaacctggtgcagttctcagagctctttcaattt
cttgcttagcaattatgtctctcaagctcctacttctgaattttcattct
cttaggtcaaggaagccccttaacaagaatgctgaatgagaaagtacacg
acaaacctctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39959494_39960601
seq2: B6Ng01-295P16.b_49_1155

seq1  GAATTCTCTTTCCTGAATAGCTTTTCCACAGAATCACATCAGTTGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCCTGAATAGCTTTTCCACAGAATCACATCAGTTGTTTTG  50

seq1  AGTTGATTGATCGCAGTACTAAGTGTTCTATTTTAAGTTAAAAATAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTGATCGCAGTACTAAGTGTTCTATTTTAAGTTAAAAATAACCC  100

seq1  ACAAATGAATCACATATATGCATCTTTTCTCTCTCCACTCCCCTATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAATCACATATATGCATCTTTTCTCTCTCCACTCCCCTATATAA  150

seq1  ATACATTCACACCCTTCCACATTTCCATAAATAATGATCCTTTTCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCACACCCTTCCACATTTCCATAAATAATGATCCTTTTCTTTGG  200

seq1  CTTCTGTAAGATCTTGAATCATAGAAAGTTAAATTGTTCTAAGAACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAAGATCTTGAATCATAGAAAGTTAAATTGTTCTAAGAACTTGA  250

seq1  ATGTCTGATCTACTCATTTCTAATAGAACTTTGTTAATTTTATCCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGATCTACTCATTTCTAATAGAACTTTGTTAATTTTATCCTTTTT  300

seq1  TCCAGACCTTCCCACTCCTCAATTTATTTTTTAACTTGACTCAGATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCTTCCCACTCCTCAATTTATTTTTTAACTTGACTCAGATGATT  350

seq1  TCAATTTCTGGAGTGAGGCAGGGACAGAAACAGAGAGAACTTGAGTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTGGAGTGAGGCAGGGACAGAAACAGAGAGAACTTGAGTAGGT  400

seq1  GCATCTCTGGCATTTTAAAGAGCACCAATGGAGGTGGGGAGCGGTATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTGGCATTTTAAAGAGCACCAATGGAGGTGGGGAGCGGTATTAG  450

seq1  AACTAATGACTAATGTGTTACTTTAATTTTTAAATTTTCCCTGTTATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGACTAATGTGTTACTTTAATTTTTAAATTTTCCCTGTTATACT  500

seq1  TAGATTCACATGCTATGGAAAATGAAGCTACTAGAATATCTTAATAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCACATGCTATGGAAAATGAAGCTACTAGAATATCTTAATAGTAA  550

seq1  TCCATGGCACCAATTGCTTATGTAACTGTGACCCTCCATTTGTTCCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCACCAATTGCTTATGTAACTGTGACCCTCCATTTGTTCCTAAT  600

seq1  GGGACCCACGATTTCCATTCAAGGAGCCAGTATGCTCAAAGGAAATAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCACGATTTCCATTCAAGGAGCCAGTATGCTCAAAGGAAATAACT  650

seq1  CTTTTCATTGAGAAAATTCCATCTCTCCTTTTTGAGCAAGT--ACACACA  698
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CTTTTCATTGAGAAAATTCCATCTCTCCTTTTTGAGCAAGTACACACACA  700

seq1  CACACACACACACACACACACACAAATATACTACTCATTTCTGGACAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAAATATACTACTCATTTCTGGACAATG  750

seq1  TGACTGAAGAAAGAAGTCTACTGGCATCTTTGTTTGATTTTTGGACATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAGAAAGAAGTCTACTGGCATCTTTGTTTGATTTTTGGACATTT  800

seq1  CACTATATGAGATGATTAAGCCTTATTGTTGAAAATACTTTTAGACAGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATATGAGATGATTAAGCCTTATTGTTGAAAATACTTTTAGACAGCA  850

seq1  TTGGGTTATTTTTAGCAGAAACCATTCTCCCTGATGCATTAATCAATGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTATTTTTAGCAGAAACCATTCTCCCTGATGCATTAATCAATGTT  900

seq1  GAAATTCTCAATATTACTCTAATTACTTTGAAACCATCATTAGAGTTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTCAATATTACTCTAATTACTTTGAAACCATCATTAGAGTTACA  950

seq1  GGTCTGTAAAATATTAGAGCATAGTCCTTTCAAGGGATTGTCTAGCCTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTAAAATATTAGAGCATAGTCCTTTCAAGGGATTGTCTAGCCTCT  1000

seq1  TTACCTTCTTAAACCCATCAAC-TCTTTGTGGTACAGACTAAG-AAAAAG  1046
      |||||||||||| || |||||| ||||||| |||||||||||| ||||||
seq2  TTACCTTCTTAACCCAATCAACTTCTTTGT-GTACAGACTAAGAAAAAAG  1049

seq1  TATCCAAACAATGCT-GAAATAATATTGTATGTTCTATAATCTC-TCTAC  1094
      ||||  ||| ||||| |||||||||||||||| ||||| ||||| |||||
seq2  TATC--AAC-ATGCTGGAAATAATATTGTATG-TCTAT-ATCTCTTCTAC  1094

seq1  ATGTCATTTACTTA  1108
      |||||| |||||||
seq2  ATGTCA-TTACTTA  1107


seq1: chrX_40100863_40102013
seq2: B6Ng01-295P16.g_70_1232 (reverse)

seq1  CATAGAG--TTGTCGTGT-CCTTCTCA-TCAGCATTCTTGTTAAGGGGCT  46
      |||||||  ||||||||| | |||||| ||||||||||||||||||||||
seq2  CATAGAGGTTTGTCGTGTACTTTCTCATTCAGCATTCTTGTTAAGGGGCT  50

seq1  TTCCTGACTTAAGAGAATGAAA--TCAG-AGTAGAAGCTCTGAGAGACAT  93
      | | |||| |||||||||||||  |||| ||||| |||| ||||||||||
seq2  TCCTTGACCTAAGAGAATGAAAATTCAGAAGTAGGAGCT-TGAGAGACAT  99

seq1  AA-TGCT-AGCAAG-AATTGAAGAAGCTCTGAGAACTGCACCAGG-TTGG  139
      || |||| |||||| |||||||  ||||||||||||||||||||| ||||
seq2  AATTGCTAAGCAAGAAATTGAAAGAGCTCTGAGAACTGCACCAGGTTTGG  149

seq1  T-GCACTTAGCATCAAGTTGTAACTATTGTGT-AACAGACCATGCGTCTA  187
      | ||||||||||||||||   ||||||||||| |||||||||||||||||
seq2  TGGCACTTAGCATCAAGTGTAAACTATTGTGTAAACAGACCATGCGTCTA  199

seq1  CAACTTATTTT-CCCCCTCAACATGAAATTTTGCATGAAGAAAGAAAAGG  236
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CAACTTATTTTCCCCCCTCAACATGAAATTTTGCATGAAG-AAGAAAAGG  248

seq1  AACCTAGAGTTAATAAACTCCTTAGCATGATAAAAAACACATTTAAATGC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAGTTAATAAACTCCTTAGCATGATAAAAAACACATTTAAATGC  298

seq1  ATTTGTATGGCATTTGAATGTACCGTCTATTGATGTTTAACTCATTAAGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATGGCATTTGAATGTACCGTCTATTGATGTTTAACTCATTAAGT  348

seq1  ATAGTTTTTAAACTTTATAACTTTACTCTGAGAAAATACAATTTAGTATT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTAAACTTTATAACTTTACTCTGAGAAAATACAATTTAGTATT  398

seq1  TAAAATTTTTTTAAATGTTACATGTCTATTAGCATAATCATAAGATAAAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTTTAAATGTTACATGTCTATTAGCATAATCATAAGATAAAT  448

seq1  ATATGGTTTCTTATGTAACCCAAGCTTGGCCCAAATTTGTAATCCTCATG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTCTTATGTAACCCAAGCTTGGCCCAAATTTGTAATCCTCATG  498

seq1  CTTTATTCAGACATCCAAATTCTGGGATTTTACACTTGAAATAAATATAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCAGACATCCAAATTCTGGGATTTTACACTTGAAATAAATATAT  548

seq1  TTTTCGTGTTTCCTAAAACGTTTCACATTATGTTTTATTAAATGATCAAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTGTTTCCTAAAACGTTTCACATTATGTTTTATTAAATGATCAAG  598

seq1  AGATTTTTAACCATTTTTTACATCTCTGCAGTCATTTGATACTAACATTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTAACCATTTTTTACATCTCTGCAGTCATTTGATACTAACATTC  648

seq1  TAATAGAGTTAAATCATACTGATATGAAGCTATTAATTTAGCTATAAGTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGTTAAATCATACTGATATGAAGCTATTAATTTAGCTATAAGTA  698

seq1  GACAATTTAAAGTATTTAAGTCACTCCCAATTTCACTAATATTGCATTAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTAAAGTATTTAAGTCACTCCCAATTTCACTAATATTGCATTAT  748

seq1  GTACTTGACATTGCTAGGACATTTTTTAGGTAGATAATTTAATGTTAGCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGACATTGCTAGGACATTTTTTAGGTAGATAATTTAATGTTAGCT  798

seq1  GGTTTAGAGAATATTATGTCTAGATTCAGCCCTCAAAATCTGCAGTTGGT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGAGAATATTATGTCTAGATTCAGCCCTCAAAATCTGCAGTTGGT  848

seq1  AGAAAAAATAAGCATCAAAGTTCTAGACTCTAATTAGTGTTTAAAGAATG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATAAGCATCAAAGTTCTAGACTCTAATTAGTGTTTAAAGAATG  898

seq1  GTATCCAGGTCATATCTCTGGACCTGGGAAGAGACAAGACACCATTAACT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGGTCATATCTCTGGACCTGGGAAGAGACAAGACACCATTAACT  948

seq1  GTCTGAAGGGTCATTATTTGATTACTATCTTGATATCTTGACCTGTGTTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGGGTCATTATTTGATTACTATCTTGATATCTTGACCTGTGTTC  998

seq1  AGGAGGCTTAAACCTATGTGATTGCAGTATAGAATATATATATATGTGTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTTAAACCTATGTGATTGCAGTATAGAATATATATATATGTGTG  1048

seq1  TATATATATCACAATAAAAATTGGCAACCTACAGATTGGGGAAAAATATC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATCACAATAAAAATTGGCAACCTACAGATTGGGGAAAAATATC  1098

seq1  TTCACTAACCCCACATCAGATAAAAACCAATCAAAAAATGGGGTATAGAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAACCCCACATCAGATAAAAACCAATCAAAAAATGGGGTATAGAA  1148

seq1  CTAAACTGAGAATTC  1151
      |||||||||||||||
seq2  CTAAACTGAGAATTC  1163


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