BAC Information

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BAC

Clone NameB6Ng01-299B07
ChromosomeX (Build37)7 (Build37)
Map Location 38,687,489 - 38,687,95599,950,867 - 99,951,844
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039769, LOC385344
Downstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299B07.bB6Ng01-299B07.g
ACCGA094021GA094022
length328986
definitionB6Ng01-299B07.b B6Ng01-299B07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,687,489 - 38,687,955)(99,950,867 - 99,951,844)
sequence
gaattctcacctgaggaataccgaatggctgagaaacacctgaaaaaatg
ttcagcatcctttttttttccattggcagtgtaggttttttttttaatta
ggtattttcctcgtttacattttcaatgctatcccaaaggtcccccatac
ccacccccccaatcccctacccacccactccccctttttggccctggcat
tcccctgtactggggcatataaagtttgcaagaccaatgggcctctcttc
ccaatgatggccgactaggccatcttctgatacatatgcagctaaagaca
agagctcccggggaccgggttagttcat

gaattccctgcgtgagaggcgtgcctgctgtggctttggtgagaccctgt
tctggagagtcatttgaatgtggatggtcactggcactgtacttgtgtac
ccgcccacctgcatttcttttaccacccttgagccccatgagagtttaag
gatatgcatcttttctcagtaagtcctgttgattcaatgagtcatctttt
gaagaaaacctgggagattcctaaatggataaccaagaaaataagttctt
cctcatcttaatgttaccagcgaaatcagggttcccttctggattcttaa
tactggtaagaaaacaattttgaaatggacttgggggaactggagagatg
gctcagtggttaagagcaccaattgctcttccagaggtactgagttcaat
tcccagaaaccacatggtggctcacagccatcggtaacgggatctaatgc
cctcttcggggatgtgtctgaagacagctactgtgtactcatataaataa
atctaaaaaggaaaaagaaaaaagaaatggatttgagaaaagttttatta
gaatttgagaggaaaaaacccaacagggttggcaatctctgaatcctggc
agctgccaggaggagggagatggagaagaggaggaagagattggcatctg
ggtctgaggatgctggttgttcatggttgctcagctctggaggttggtga
atgcctacatgacagaatgggaagggggacttccgaaaaaaaagcaggaa
aagcccagagtgtcagggaaaacaccaaaaggctttggctcgtattcaaa
agtaggaagaacagaaagaaggtacacagtttgagttaagaacttagaaa
caggcagctttcatgcactgcctgtatgggagagagtgagttatagaggc
tgctcagagggagggcctctgggaaaggtctcagtaagagccataattta
ttccttcccaatcgccttagcttgtcatcagctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38687489_38687955
seq2: B6Ng01-299B07.b_130_372 (reverse)

seq1  ATGAACTAA-CCAGTACCCGGGAGCTCTTGTCTTTAGCTGCATATGTATC  49
      ||||||||| || || ||||||||||||||||||||||||||||||||||
seq2  ATGAACTAACCCGGTCCCCGGGAGCTCTTGTCTTTAGCTGCATATGTATC  50

seq1  AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTG  99
      | |||||||||||||||||||||| ||| |||||||||||||||| ||||
seq2  AGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCATTGGTCTTG  100

seq1  CAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGA  149
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGGGGGA  150

seq1  GTGGGTGGGTAGGGGA-TGGGGGGGTGGGGATGGGGGACCTTTGGGATAG  198
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  GTGGGTGGGTAGGGGATTGGGGGGGTGGGTATGGGGGACCTTTGGGATAG  200

seq1  CATTGAAAATGTAAATGAGGGCTGGTGAGATGGCTCAATGGGTAAGAGCA  248
      ||||||||||||||| ||||       | ||  || |||    || |  |
seq2  CATTGAAAATGTAAACGAGG------AAAATACCT-AATTAAAAAAAAAA  243

seq1  CCCGACTGCTCTTCCGAAGGTCCTAAGTTCAAATCCCAGCAACCACATGG  298
                                                        
seq2  --------------------------------------------------  243

seq1  TGGCTCACAACCACCCATAATGAGATCTGATGGCCCTAAAGATAGCTACA  348
                                                        
seq2  --------------------------------------------------  243

seq1  GTGTACTTACATATAATAAATAAATAAATAAATAAATAAATAAATAAATA  398
                                                        
seq2  --------------------------------------------------  243

seq1  AATAAATAAATAAATCTTTTTAAAAAAAAAGAAAATGTAAACGAGGAAAA  448
                                                        
seq2  --------------------------------------------------  243

seq1  TACCTAATTTAAAAAAAAA  467
                         
seq2  -------------------  243


seq1: chr7_99950867_99951844
seq2: B6Ng01-299B07.g_66_1051

seq1  GAATTCCCTGCGTGAGAGGCGTGCCTGCTGTGGCTTTGGTGAGACCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCGTGAGAGGCGTGCCTGCTGTGGCTTTGGTGAGACCCTGT  50

seq1  TCTGGAGAGTCATTTGAATGTGGATGGTCACTGGCACTGTACTTGTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGTCATTTGAATGTGGATGGTCACTGGCACTGTACTTGTGTAC  100

seq1  CCGCCCACCTGCATTTCTTTTACCACCCTTGAGCCCCATGAGAGTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCACCTGCATTTCTTTTACCACCCTTGAGCCCCATGAGAGTTTAAG  150

seq1  GATATGCATCTTTTCTCAGTAAGTCCTGTTGATTCAATGAGTCATCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCATCTTTTCTCAGTAAGTCCTGTTGATTCAATGAGTCATCTTTT  200

seq1  GAAGAAAACCTGGGAGATTCCTAAATGGATAACCAAGAAAATAAGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACCTGGGAGATTCCTAAATGGATAACCAAGAAAATAAGTTCTT  250

seq1  CCTCATCTTAATGTTACCAGCGAAATCAGGGTTCCCTTCTGGATTCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTTAATGTTACCAGCGAAATCAGGGTTCCCTTCTGGATTCTTAA  300

seq1  TACTGGTAAGAAAACAATTTTGAAATGGACTTGGGGGAACTGGAGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTAAGAAAACAATTTTGAAATGGACTTGGGGGAACTGGAGAGATG  350

seq1  GCTCAGTGGTTAAGAGCACCAATTGCTCTTCCAGAGGTACTGAGTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGTTAAGAGCACCAATTGCTCTTCCAGAGGTACTGAGTTCAAT  400

seq1  TCCCAGAAACCACATGGTGGCTCACAGCCATCGGTAACGGGATCTAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAACCACATGGTGGCTCACAGCCATCGGTAACGGGATCTAATGC  450

seq1  CCTCTTCGGGGATGTGTCTGAAGACAGCTACTGTGTACTCATATAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCGGGGATGTGTCTGAAGACAGCTACTGTGTACTCATATAAATAA  500

seq1  ATCTAAAAAGGAAAAAGAAAAAAGAAATGGATTTGAGAAAAGTTTTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAAGGAAAAAGAAAAAAGAAATGGATTTGAGAAAAGTTTTATTA  550

seq1  GAATTTGAGAGGAAAAAACCCAACAGGGTTGGCAATCTCTGAATCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAGAGGAAAAAACCCAACAGGGTTGGCAATCTCTGAATCCTGGC  600

seq1  AGCTGCCAGGAGGAGGGAGATGGAGAAGAGGAGGAAGAGATTGGCATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAGGAGGAGGGAGATGGAGAAGAGGAGGAAGAGATTGGCATCTG  650

seq1  GGTCTGAGGATGCTGGTTGTTCATGGTTGCTCAGCTCTGGAGGTTGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGGATGCTGGTTGTTCATGGTTGCTCAGCTCTGGAGGTTGGTGA  700

seq1  ATGCCTACATGACAGAATGGGAAGGGGGACTTCCGAAAAAAAAAGCAGGA  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGCCTACATGACAGAATGGGAAGGGGGACTTCCG-AAAAAAAAGCAGGA  749

seq1  AAAGCCCAGAGTGTCAGGGAAAACACCAAAAGGCTTTGGCTCGTATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGAGTGTCAGGGAAAACACCAAAAGGCTTTGGCTCGTATTCAA  799

seq1  AAGTAGGAAGAACAGAAAGAAGGTACACAGTTTGAGTT-AGAACTTAGAA  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGTAGGAAGAACAGAAAGAAGGTACACAGTTTGAGTTAAGAACTTAGAA  849

seq1  ACAGGCAGC-TTCATGCACTG-CTGTAT-GGAGAGAGTGAGTTTAAGAGG  896
      ||||||||| ||||||||||| |||||| ||||||||||||||  |||||
seq2  ACAGGCAGCTTTCATGCACTGCCTGTATGGGAGAGAGTGAGTTATAGAGG  899

seq1  CTGCTCAGAGGGAGGGCCTCTGGG-AAGGTCTCAGTAAGAG-CATAA-TT  943
      |||||||||||||||||||||||| |||||||||||||||| ||||| ||
seq2  CTGCTCAGAGGGAGGGCCTCTGGGAAAGGTCTCAGTAAGAGCCATAATTT  949

seq1  ATTCCT--CCCATCGCCTTAGCTTGTCATCAGCTGAA  978
      ||||||  || ||||||||||||||||||||||||||
seq2  ATTCCTTCCCAATCGCCTTAGCTTGTCATCAGCTGAA  986


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