BAC Information

Click to search

BAC

Clone NameB6Ng01-300B02
ChromosomeX (Build37)
Map Location 116,926,506 - 116,927,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385417
Downstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, Pcdh11x, H2afb3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300B02.bB6Ng01-300B02.g
ACCGA094738GA094739
length719215
definitionB6Ng01-300B02.b B6Ng01-300B02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagggttgtcttcacctgcccaggggagaaaggtagaggggat
agggaaagaattgtgagaggggatgatggggacagagaccaggatgtaag
ttaaattaataaaaataataaatcaattaattaaattaagtaaaacttaa
aaaaaagattcctgtgataaaaattgtgcaaagaagataatataaaactg
agttatattttatagtaatattaaattatagtaagcatagaaaatcagat
ttaaggtactatttataataatcaatgccaatgaaatttgagattaataa
ggtgtaagtcagagttttctataaagataaccaatttaaaaataataata
tgtttgagcataaggaatcccatatgttacaatgacgaagtaaccaccat
attcagaaaacacattcgcaattaaagtattttaatacacacttgtgtca
tttctttgagcatagcagtcctggaacagaggagattatagcctcctttc
aagttcctttcataaaaaccaaaataatatatacacactaaacattattt
gctgctatgtcttgggactgctggaaatatttatttctgtctcccctaga
acagacatcaaacagctagaataagtagatttgctcatcccatcaaccca
gacaactgaagtcccacataaataaatcttgggattttttttttttttta
ggaattcattatagaagaa

aaaaaggtcaacaagctgaaatgtccaagggaggacaccttgttcctact
tgggagagagaagaaagcaatcacaattagggaggaagagagggacctag
aagggaaagtggatggggagagtaggagggagaaggtaagctgttttcta
ttgggtgatggtcattgatggaatggtttatgattcttggtatgtggttg
gtttggttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_116926506_116927636
seq2: B6Ng01-300B02.b_47_1180

seq1  GAATTCCAAGGGTTGTCTTCACCTGCCCAGGGGAGAAAGGTAGAGGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGTTGTCTTCACCTGCCCAGGGGAGAAAGGTAGAGGGGAT  50

seq1  AGGGAAAGAATTGTGAGAGGGGATGATGGGGACAGAGACCAGGATGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGAATTGTGAGAGGGGATGATGGGGACAGAGACCAGGATGTAAG  100

seq1  TTAAATTAATAAAAATAATAAATCAATTAATTAAATTAAGTAAAACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAATAAAAATAATAAATCAATTAATTAAATTAAGTAAAACTTAA  150

seq1  AAAAAAGATTCCTGTGATAAAAATTGTGCAAAGAAGATAATATAAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATTCCTGTGATAAAAATTGTGCAAAGAAGATAATATAAAACTG  200

seq1  AGTTATATTTTATAGTAATATTAAATTATAGTAAGCATAGAAAATCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATTTTATAGTAATATTAAATTATAGTAAGCATAGAAAATCAGAT  250

seq1  TTAAGGTACTATTTATAATAATCAATGCCAATGAAATTTGAGATTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTACTATTTATAATAATCAATGCCAATGAAATTTGAGATTAATAA  300

seq1  GGTGTAAGTCAGAGTTTTCTATAAAGATAACCAATTTAAAAATAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAGTCAGAGTTTTCTATAAAGATAACCAATTTAAAAATAATAATA  350

seq1  TGTTTGAGCATAAGGAATCCCATATGTTACAATGACGAAGTAACCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGCATAAGGAATCCCATATGTTACAATGACGAAGTAACCACCAT  400

seq1  ATTCAGAAAACACATTCGCAATTAAAGTATTTTAATACACACTTGTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAAAACACATTCGCAATTAAAGTATTTTAATACACACTTGTGTCA  450

seq1  TTTCTTTGAGCATAGCAGTCCTGGAACAGAGGAGATTATAGCCTCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGCATAGCAGTCCTGGAACAGAGGAGATTATAGCCTCCTTTC  500

seq1  AAGTTCCTTTCATAAAAACCAAAATAATATATACACACTAAACATTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTTTCATAAAAACCAAAATAATATATACACACTAAACATTATTT  550

seq1  GCTGCTATGTCTTGGGACTGCTGGAAATATTTATTTCTGTCTCCCCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATGTCTTGGGACTGCTGGAAATATTTATTTCTGTCTCCCCTAGA  600

seq1  ACAGACATCAAACAGCTAGAATAAGTAGATTTGCTCATCCCATCAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATCAAACAGCTAGAATAAGTAGATTTGCTCATCCCATCAACCCA  650

seq1  GACAACTGAAGTCCCACATAAATAAATCTTGGGATTTTTTTTTTTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTGAAGTCCCACATAAATAAATCTTGGGATTTTTTTTTTTTTTTA  700

seq1  GGAATTCATTATAGAAGAATTAAAACTTCATTTTTAAAAGTCTGGAGAAA  750
      |||||||||||||||||||                  |||||||||||||
seq2  GGAATTCATTATAGAAGAANNNNNNNNNNNNNNNNNNAAGTCTGGAGAAA  750

seq1  TATATTTAAAAAATAATAATAGAAACATTTAGCACCCTGGTATGGTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAAAAAATAATAATAGAAACATTTAGCACCCTGGTATGGTCAAG  800

seq1  AAACATACTGAAAAAATCAGGACCTGTTCGCATACATAAAGCACAAGAAA  850
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACATACTGAAAAAATCAGGACCTGTTCGCATACATAAAGCACAAGAAA  849

seq1  CACGGATAGTCACTGAGAGGCAACAGTGCCTGTTTTAAAGA-TGCTCTGG  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACGGATAGTCACTGAGAGGCAACAGTGCCTGTTTTAAAGATTGCTCTGG  899

seq1  AGAAGGAAGGTAGAACATGGCC-TGTGATACTCCATCAATTCAACTGTAA  948
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  AGAAGGAAGGTAGAACATGGCCTTGTGATACTCCATCCATTCAACTGTAA  949

seq1  ACAG-TCTAGCATAGAAAAAGGATATTTTTACTTAGAGGATAAGAATTGA  997
      |||| |||||||||||||||||||||||||||||||||||| || |||||
seq2  ACAGTTCTAGCATAGAAAAAGGATATTTTTACTTAGAGGAT-AGGATTGA  998

seq1  ATCTTATTCAGACTTTACACTTGAAGCCCAGTATCAG-ACACATCAT-GA  1045
      |||||||||||||||  |||||||||||||||||||| ||||||||| ||
seq2  ATCTTATTCAGACTTACCACTTGAAGCCCAGTATCAGAACACATCATGGA  1048

seq1  TGAAAGCAGAGTTTGGTAAATCCATATGTC-TCTTACACACAACCTTCAG  1094
      ||||||||||| ||||||||| |||||||| |||||||||| | ||||||
seq2  TGAAAGCAGAG-TTGGTAAATTCATATGTCTTCTTACACACCAGCTTCAG  1097

seq1  ACAAAGCTACAAGAAATTAGTTTGG-TCA-GTCATGAAA  1131
      ||  |||||| |||| ||||||||| ||| |||||||||
seq2  AC-CAGCTAC-AGAATTTAGTTTGGTTCAGGTCATGAAA  1134


| Home | SequenceCutter | Blast | Download |