BAC Information

Click to search

BAC

Clone NameB6Ng01-300K05
ChromosomeX (Build37)
Map Location 110,566,590 - 110,675,996
singlet/doubletdoublet
Overlap geneDach2
Upstream geneEG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918
Downstream geneLOC237016, EG664945, EG634881, LOC100039201, Klhl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300K05.bB6Ng01-300K05.g
ACCGA095164GA095165
length1,1061,152
definitionB6Ng01-300K05.b B6Ng01-300K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,674,946 - 110,675,996)(110,566,590 - 110,567,747)
sequence
gaattcaacaaaacaaataatgcaatttaaatggagcatagaactagaaa
gagtttatataaataattgataaatatttttaaaatgttcaacatcctta
gccatcaggaaaattcaaataaaaactatcttgaggatttcatcttactt
cagtcaagatgacacacacagtcacacacacacacacacacacacacaca
cacacacacacacacattggtgttagctgttcctcataaggcagaaaata
tacctaccagttatattacctttggatatcttcccaaaagactctacaca
ttactacaaagaaacttgattatccatggttgttgcttcactcttcacaa
tattcatggaacagaaacaacctaaattctgcaaactaatgaatgtacaa
taaaacatagtatatttatactattgaatattttaagctattaagaaaaa
tgaaattagaaaatttacagtaaaatggatataactggaaacaaacatcc
ttagtgagggcacccaaaccacagaagacaaacatttcatgtttctccta
atttaaacttttagaatactatttcatttggaataccagacgaatcatga
atcacctctgaaccagctacatcacacccctctcctcaaagctcaaggat
cttagagaaagaagaaactggaaaatgtgcaatcatataggattagaagt
agtggataactgccagggggctatttcctgccaaaataaggcagatagac
acatgaatttacagtgattgagacagtatgcataagagatgcacaagctc
tagcaagacaaaaaccacagaatgaagaatgagaagtatacacaaactcc
cactcctagctgcagtttcaagcaattgattgctgataggagaagaattg
tctgtgtctgataattgcaatgatgggacacttggaatgctaactacatt
tcaggcatttctcatacccaggttaatataaatggacttgatacatttgg
aaaaaaaaaaggagaggggcataaactttgataaggtaaatcggtgggag
tcatctatatagtaatgtaagggactactgtgtcaaatacatcatataca
ttgtca

gaattcttaggaaggtacactcacttttgcagggcaacacaggttaataa
gtgtgctatagcaatattagaagataacctcagctattctatcaggcatg
ggaatatgtttgtatgattaacagttcttaagtgcttgaaattccttcct
gtctgataagaaatttaaaaaaacatttaattgacaagatatatctgaaa
tttcctaaaacaggtatgacagtttcatttaagttgaaatgatctgtagc
atgttggagtctcccatgttttagggtttattgtaggaaagagtaacaat
gacaaagcacgttttgatattgcctggtagtattgtctcttctttacttc
catgtgcactgtttaagtgaaatttattttttgatgaggtttccctcctt
ccttgtgggccccatgttttctatatgtgttttataagaaaaagcatcct
aggacattgagggagatatagaagacactgtgtaatgtgccctatatttt
caatacagaaaatgaaaattgctttgattgtttttctaatatctggaaaa
ttttctgtactaaaaattagttttcaatgccatacatataaaataatatc
cacatgacctgaagcagtgtgtgtacctccttaagcgttaaactttgttt
ttgactatgacatccatgtagaaaagactagtaccaaatagactttaaaa
atgaataatttcgggaaaggggatgagatagaggatttcagagggggaac
caggaaaggggaaatatttgacatgtaaataaagaaaatatccaaaacaa
acaaacaaacaaacaaacaaacaaaaaatgcccagaagtactgcatgtat
tttgtaggtgatgtttattctaagaaattttccttttgtcttcctataaa
gacacattttaccttcctacggtatttaaaggtaaatgtctatgggaatt
gtaagagtacacatttctggttattagcacaagagagtagcacgcagcat
ggtgcattgtactgtgattgagtagtttctatgttaagtacttttctttc
agctataataaatgactgtggtaatgtgaaaaattttcttgtgaaccata
aagttattgacatacaaaattgatagtttaactgaaaaattggattatgt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110674946_110675996
seq2: B6Ng01-300K05.b_109_1151 (reverse)

seq1  TGACAATGTTATATGATGTATTTTGGACACAGTAGTTCCCTACATTAACC  50
      |||||||| ||||||||||||||  ||||||||||| || |||||||  |
seq2  TGACAATG-TATATGATGTATTT--GACACAGTAGTCCCTTACATTA--C  45

seq1  TATATAGATGGACTCCCACCGATTTACC-TATCAAAGTTTATGCCCCCTC  99
      ||||||||| |||||||||||||||||| ||||||||||||||||||   
seq2  TATATAGAT-GACTCCCACCGATTTACCTTATCAAAGTTTATGCCCC--T  92

seq1  CTCCTTTTTTTTTTCCAAATGTATCAAGTCCATTTATATTAACCTGGGTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTTTTTTCCAAATGTATCAAGTCCATTTATATTAACCTGGGTA  142

seq1  TGAGAAATGCCCTGAAATGTAGTTAGCATTCCAAGTGTCCCATCATTGCA  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATG-CCTGAAATGTAGTTAGCATTCCAAGTGTCCCATCATTGCA  191

seq1  ATTATCAGACACAGACAATTCTTCTCCTATCAGCAATCAATTGCTTGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGACACAGACAATTCTTCTCCTATCAGCAATCAATTGCTTGAAA  241

seq1  CTGCAGCTAGGAGTGGGAGTTTGTGTATACTTCTCATTCTTCATTCTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTAGGAGTGGGAGTTTGTGTATACTTCTCATTCTTCATTCTGTG  291

seq1  GTTTTTGTCTTGCTAGAGCTTGTGCATCTCTTATGCATACTGTCTCAATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTCTTGCTAGAGCTTGTGCATCTCTTATGCATACTGTCTCAATC  341

seq1  ACTGTAAATTCATGTGTCTATCTGCCTTATTTTGGCAGGAAATAGCCCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAATTCATGTGTCTATCTGCCTTATTTTGGCAGGAAATAGCCCCC  391

seq1  TGGCAGTTATCCACTACTTCTAATCCTATATGATTGCACATTTTCCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTATCCACTACTTCTAATCCTATATGATTGCACATTTTCCAGTT  441

seq1  TCTTCTTTCTCTAAGATCCTTGAGCTTTGAGGAGAGGGGTGTGATGTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCTCTAAGATCCTTGAGCTTTGAGGAGAGGGGTGTGATGTAGC  491

seq1  TGGTTCAGAGGTGATTCATGATTCGTCTGGTATTCCAAATGAAATAGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGAGGTGATTCATGATTCGTCTGGTATTCCAAATGAAATAGTAT  541

seq1  TCTAAAAGTTTAAATTAGGAGAAACATGAAATGTTTGTCTTCTGTGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGTTTAAATTAGGAGAAACATGAAATGTTTGTCTTCTGTGGTTT  591

seq1  GGGTGCCCTCACTAAGGATGTTTGTTTCCAGTTATATCCATTTTACTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCCTCACTAAGGATGTTTGTTTCCAGTTATATCCATTTTACTGTA  641

seq1  AATTTTCTAATTTCATTTTTCTTAATAGCTTAAAATATTCAATAGTATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTAATTTCATTTTTCTTAATAGCTTAAAATATTCAATAGTATAA  691

seq1  ATATACTATGTTTTATTGTACATTCATTAGTTTGCAGAATTTAGGTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTATGTTTTATTGTACATTCATTAGTTTGCAGAATTTAGGTTGTT  741

seq1  TCTGTTCCATGAATATTGTGAAGAGTGAAGCAACAACCATGGATAATCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCATGAATATTGTGAAGAGTGAAGCAACAACCATGGATAATCAA  791

seq1  GTTTCTTTGTAGTAATGTGTAGAGTCTTTTGGGAAGATATCCAAAGGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTAGTAATGTGTAGAGTCTTTTGGGAAGATATCCAAAGGTAA  841

seq1  TATAACTGGTAGGTATATTTTCTGCCTTATGAGGAACAGCTAACACCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGGTAGGTATATTTTCTGCCTTATGAGGAACAGCTAACACCAAT  891

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTGTGT  941

seq1  GTGTCATCTTGACTGAAGTAAGATGAAATCCTCAAGATAGTTTTTATTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATCTTGACTGAAGTAAGATGAAATCCTCAAGATAGTTTTTATTTG  991

seq1  AATTTTCCTGATGGCTAAGGATGTTGAACATTTTAAAAATATTTATCAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTGATGGCTAAGGATGTTGAACATTTTAAAAATATTTATCAAT  1041

seq1  TA  1051
      ||
seq2  TA  1043


seq1: chrX_110566590_110567747
seq2: B6Ng01-300K05.g_68_1219

seq1  GAATTCTTAGGAAGGTACACTCACTTTTGCAGGGCAACACAGGTTAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAAGGTACACTCACTTTTGCAGGGCAACACAGGTTAATAA  50

seq1  GTGTGCTATAGCAATATTAGAAGATAACCTCAGCTATTCTATCAGGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTATAGCAATATTAGAAGATAACCTCAGCTATTCTATCAGGCATG  100

seq1  GGAATATGTTTGTATGATTAACAGTTCTTAAGTGCTTGAAATTCCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATGTTTGTATGATTAACAGTTCTTAAGTGCTTGAAATTCCTTCCT  150

seq1  GTCTGATAAGAAATTTAAAAAAACATTTAATTGACAAGATATATCTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATAAGAAATTTAAAAAAACATTTAATTGACAAGATATATCTGAAA  200

seq1  TTTCCTAAAACAGGTATGACAGTTTCATTTAAGTTGAAATGATCTGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAAACAGGTATGACAGTTTCATTTAAGTTGAAATGATCTGTAGC  250

seq1  ATGTTGGAGTCTCCCATGTTTTAGGGTTTATTGTAGGAAAGAGTAACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGAGTCTCCCATGTTTTAGGGTTTATTGTAGGAAAGAGTAACAAT  300

seq1  GACAAAGCACGTTTTGATATTGCCTGGTAGTATTGTCTCTTCTTTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCACGTTTTGATATTGCCTGGTAGTATTGTCTCTTCTTTACTTC  350

seq1  CATGTGCACTGTTTAAGTGAAATTTATTTTTTGATGAGGTTTCCCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCACTGTTTAAGTGAAATTTATTTTTTGATGAGGTTTCCCTCCTT  400

seq1  CCTTGTGGGCCCCATGTTTTCTATATGTGTTTTATAAGAAAAAGCATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGGCCCCATGTTTTCTATATGTGTTTTATAAGAAAAAGCATCCT  450

seq1  AGGACATTGAGGGAGATATAGAAGACACTGTGTAATGTGCCCTATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTGAGGGAGATATAGAAGACACTGTGTAATGTGCCCTATATTTT  500

seq1  CAATACAGAAAATGAAAATTGCTTTGATTGTTTTTCTAATATCTGGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGAAAATGAAAATTGCTTTGATTGTTTTTCTAATATCTGGAAAA  550

seq1  TTTTCTGTACTAAAAATTAGTTTTCAATGCCATACATATAAAATAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTACTAAAAATTAGTTTTCAATGCCATACATATAAAATAATATC  600

seq1  CACATGACCTGAAGCAGTGTGTGTACCTCCTTAAGCGTTAAACTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACCTGAAGCAGTGTGTGTACCTCCTTAAGCGTTAAACTTTGTTT  650

seq1  TTGACTATGACATCCATGTAGAAAAGACTAGTACCAAATAGACTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATGACATCCATGTAGAAAAGACTAGTACCAAATAGACTTTAAAA  700

seq1  ATGAATAATTTCGGGAAAGGGGATGAGATAGAGGATTTCAGAGGGGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAATTTCGGGAAAGGGGATGAGATAGAGGATTTCAGAGGGGGAAC  750

seq1  CAGGAAAGGGGAAATATTTGACATGTAAATAAAGAAAATATCCAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGGGGAAATATTTGACATGTAAATAAAGAAAATATCCAAAACAA  800

seq1  ACAAACAAACAAACAAACAAACAAAAAATGCCCAGAAGTACTGCATGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAAAAATGCCCAGAAGTACTGCATGTAT  850

seq1  TTTGTAGGTGATGTTTATTCTAAGAAATTTTCCTTTTGTCTTCCTATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGTGATGTTTATTCTAAGAAATTTTCCTTTTGTCTTCCTATAAA  900

seq1  GACACA-TTTACC-TCCTACGGTATTTAAAGGTAAATGTCTATGGGAAAT  948
      |||||| |||||| |||||||||||||||||||||||||||||||||| |
seq2  GACACATTTTACCTTCCTACGGTATTTAAAGGTAAATGTCTATGGGAATT  950

seq1  GTAAGAGTAACACATTTCTGGTTATTAGCAC-AGAGAGTAGCACGCAGGC  997
      |||||||| |||||||||||||||||||||| ||||||||||||||| ||
seq2  GTAAGAGT-ACACATTTCTGGTTATTAGCACAAGAGAGTAGCACGCA-GC  998

seq1  AT-GTGCATTGTACTGTGATTTGAGTAGTGTCTATGTTAAAGTACTTTTC  1046
      || |||||||||||||||| ||||||||| |||||||| |||||||||||
seq2  ATGGTGCATTGTACTGTGA-TTGAGTAGTTTCTATGTT-AAGTACTTTTC  1046

seq1  TTTCAGCTATAATAAATTGAACTGT-GTAATGTGAAAAAATTTC-TGTGA  1094
      |||||||||||||||||   ||||| ||||||||||||| |||| |||||
seq2  TTTCAGCTATAATAAAT--GACTGTGGTAATGTGAAAAATTTTCTTGTGA  1094

seq1  AAACACATAAAAGTAATGACATACAAAAATGAATAATTTTAACTGAAAAA  1144
      |    ||||||  || |||||||||||| |||   | |||||||| ||||
seq2  A---CCATAAAGTTATTGACATACAAAATTGA--TAGTTTAACTG-AAAA  1138

seq1  AATGGATTAAGTTT  1158
      | ||||||| ||||
seq2  ATTGGATTATGTTT  1152


| Home | SequenceCutter | Blast | Download |