BAC Information

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BAC

Clone NameB6Ng01-301M07
ChromosomeX (Build37)
Map Location 126,627,456 - 126,628,592
singlet/doubletsinglet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301M07.bB6Ng01-301M07.g
ACCGA095995GA095996
length1,1831,148
definitionB6Ng01-301M07.b B6Ng01-301M07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaacaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtcacgccgagatatttatattatt
tgtggctattgagaaagtgtgttccctaatttcttttcttcagcctgttt
attctttgtgtaaaagaaaggccattgaccttgtttgagtaaatttttat
atccagctaacttcaccgagctgttttatcaagttagggtctctctggtg
gaattttaggatcacttaattactaatccatcatctgcaaggaattgact
tctcttgcatggatatccctgagatcttacccc
gaattcccctgcatttgctatagctctgaatcttatatcactgattatca
acaaacgatgcgaaaacatgttgtgaaaagaattcaaaagtaaggaaagt
ttaaaggactcatggggaggcagaatctagaaggacaatctaacatttca
tcccattctatacacggtcaagagtagaatctttcttttcataggattta
ttttacacagccaattataagcctttatcatttatttctcagtaagctgt
caaaaaaacttccttcaactcatgtaatgataaacattgataagaaaata
atgcattatagtcgggcaaaagagtcagagataatcttgaaaatactgca
gtgggctgaaatatttgagtctgctgtcatagaatgatcacttataagcc
attactctgcagagaagattcttatttttaaaatactgagaataattttt
taccatgagagtaggctcattattatgataaatgaacatcggtaaaaaga
aggtttcttatttgtattaaagactagcaataaacctgtatttaatccaa
ctacttggtttcacacaagccaaattgattgagagttgtataggcctaag
aactgacatgaatttgaagagttcagagttgagacagaaaaacaaagtcc
ctgtatgaggacatgttaggacatcaggggaaagtcattatctctagtca
aataaaggaaaccagccagcatcttggtctttgaaatatggtcttataaa
acataagaaaattactttttttcttttatttaaaccaagtcagtgatatt
tttgcacgatacctgcattgtctaatacactgggcttaaatattcacctc
tcagagcattagacctttgttgttgatatttttgtgtttttttttaccat
tttatgctaaaattaaacgttaatgatgcaattcacagtgtttgaataaa
aatattacactgtgaacatttacaagaatttgcatgacacttaaatgaca
gtatttcctcagatttttctttctggatttatattacaaattccactggc
cacaatacagtgggtatattctttaaggaatgtattgatgggttaagtac
agaagcttgtggagctactacctatttgggaagaaagatcaaaccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_126627456_126628592
seq2: B6Ng01-301M07.g_70_1217 (reverse)

seq1  CCTGGTTTGATTCCTCTCTCCCAAATA-GTAGTAGCT-CACAA--CTCTG  46
      |||||||||||   ||| ||||||||| ||||||||| |||||   ||||
seq2  CCTGGTTTGATCTTTCT-TCCCAAATAGGTAGTAGCTCCACAAGCTTCTG  49

seq1  TACTT-ACCATTAAATACA-TCCCTAAAGAATATACCCACTGTA-TGTGG  93
      ||||| |||  | |||||| ||| |||||||||||||||||||| |||||
seq2  TACTTAACCCATCAATACATTCCTTAAAGAATATACCCACTGTATTGTGG  99

seq1  -CAGTGAAATTTGT-ATAT-AATCCAGAA--GAAAATCTGAGGAAATACT  138
       ||||| ||||||| |||| |||||||||   ||||||||||||||||||
seq2  CCAGTGGAATTTGTAATATAAATCCAGAAAGAAAAATCTGAGGAAATACT  149

seq1  GTCATTTAAGTGTCATGCAAATTCTTGTAAATGTTCACAGTGTAATATTT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAAGTGTCATGCAAATTCTTGTAAATGTTCACAGTGTAATATTT  199

seq1  TTATTCAAAACACTGTGAATTGCATCATTAACGTTTAAATTTTAGCATAA  238
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATTC-AAACACTGTGAATTGCATCATTAACGTTT-AATTTTAGCATAA  247

seq1  AATGGT-AAAAAAAACACAAAAATATCAACAACAAAGGTCTAATGCTCTG  287
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAAAAAAAAACACAAAAATATCAACAACAAAGGTCTAATGCTCTG  297

seq1  AGAGGTGAATATTTAAG-CCAGTGTATTAGACAATGCAGGTATCGTGCAA  336
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGGTGAATATTTAAGCCCAGTGTATTAGACAATGCAGGTATCGTGCAA  347

seq1  AAATATCACTGACTTGGTTTAAATAAAAGAAAAAAAGTAATTTTCTTATG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCACTGACTTGGTTTAAATAAAAGAAAAAAAGTAATTTTCTTATG  397

seq1  TTTTATAAGACCATATTTCAAAGACCAAGATGCTGGCTGGTTTCCTTTAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGACCATATTTCAAAGACCAAGATGCTGGCTGGTTTCCTTTAT  447

seq1  TTGACTAGAGATAATGACTTTCCCCTGATGTCCTAACATGTCCTCATACA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAGAGATAATGACTTTCCCCTGATGTCCTAACATGTCCTCATACA  497

seq1  GGGACTTTGTTTTTCTGTCTCAACTCTGAACTCTTCAAATTCATGTCAGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTGTTTTTCTGTCTCAACTCTGAACTCTTCAAATTCATGTCAGT  547

seq1  TCTTAGGCCTATACAACTCTCAATCAATTTGGCTTGTGTGAAACCAAGTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGCCTATACAACTCTCAATCAATTTGGCTTGTGTGAAACCAAGTA  597

seq1  GTTGGATTAAATACAGGTTTATTGCTAGTCTTTAATACAAATAAGAAACC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTAAATACAGGTTTATTGCTAGTCTTTAATACAAATAAGAAACC  647

seq1  TTCTTTTTACCGATGTTCATTTATCATAATAATGAGCCTACTCTCATGGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTACCGATGTTCATTTATCATAATAATGAGCCTACTCTCATGGT  697

seq1  AAAAAATTATTCTCAGTATTTTAAAAATAAGAATCTTCTCTGCAGAGTAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATTCTCAGTATTTTAAAAATAAGAATCTTCTCTGCAGAGTAA  747

seq1  TGGCTTATAAGTGATCATTCTATGACAGCAGACTCAAATATTTCAGCCCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATAAGTGATCATTCTATGACAGCAGACTCAAATATTTCAGCCCA  797

seq1  CTGCAGTATTTTCAAGATTATCTCTGACTCTTTTGCCCGACTATAATGCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTATTTTCAAGATTATCTCTGACTCTTTTGCCCGACTATAATGCA  847

seq1  TTATTTTCTTATCAATGTTTATCATTACATGAGTTGAAGGAAGTTTTTTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTATCAATGTTTATCATTACATGAGTTGAAGGAAGTTTTTTT  897

seq1  GACAGCTTACTGAGAAATAAATGATAAAGGCTTATAATTGGCTGTGTAAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTACTGAGAAATAAATGATAAAGGCTTATAATTGGCTGTGTAAA  947

seq1  ATAAATCCTATGAAAAGAAAGATTCTACTCTTGACCGTGTATAGAATGGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTATGAAAAGAAAGATTCTACTCTTGACCGTGTATAGAATGGG  997

seq1  ATGAAATGTTAGATTGTCCTTCTAGATTCTGCCTCCCCATGAGTCCTTTA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGTTAGATTGTCCTTCTAGATTCTGCCTCCCCATGAGTCCTTTA  1047

seq1  AACTTTCCTTACTTTTGAATTCTTTTCACAACATGTTTTCGCATCGTTTG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTTACTTTTGAATTCTTTTCACAACATGTTTTCGCATCGTTTG  1097

seq1  TTGATAATCAGTGATATAAGATTCAGAGCTATAGCAAATGCAGGGGAATT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAATCAGTGATATAAGATTCAGAGCTATAGCAAATGCAGGGGAATT  1147

seq1  C  1137
      |
seq2  C  1148