BAC Information

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BAC

Clone NameB6Ng01-303E13
Chromosome1 (Build37)X (Build37)
Map Location 103,367,038 - 103,368,201163,770,282 - 163,770,479
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303E13.bB6Ng01-303E13.g
ACCGA097123GA097124
length1,1831,017
definitionB6Ng01-303E13.b B6Ng01-303E13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,367,038 - 103,368,201)(163,770,282 - 163,770,479)
sequence
gaattcaagccctctgcaagaaccttcagaactggtaaccaccaatccct
cttaaatctactgtcatacttgtttaattcaactacttagattctatttt
tttaaactttaaagtgactgtaattgtttatagaaaagactgaagactca
atactgaattttcagtgttacttgcatgatttgttctttatagtgtaagg
aataattttgtttatatgatttttaaaaatcgaactggatttcagattct
gtatcaggaacaggttggataaaattttcattcatcccaaaccaccaatt
tcaggggaggcacagctgttagggaaagtgaggtgggtccctagagaagg
ttttagaagctttgaatgtttaaaaagtatttaacatatcctgttgcttt
gaggagcagatgctaaagatgcacacagtccttgtggattgatttcaaag
ctggccacattgtctgttaatgatgaaagacctaaataagccacaatttt
gttgaagaagagtacattgtatatgcaaggctaccaaataataaaaagga
gatttttcacaggaaatatgaaggaactgatctgctcattgactaagagt
catataggaaatttaaagaactcatatgaaatgtgcttcagccgccatgt
cttttgtttctatgactgtatgccaaatttcacttctttttttagaagtc
ttcatgaattcacatgtgtgatcttctctgacagggcatcagatgatgtc
ctgtagatgtgttttatgccaagctacactaaactatagctattggagcc
acatttatcataaaaactatgtggttttatatgaatgtccccacagtctc
ctgtgtgcattcttggcacacagagagtatcagtactaagtgatgtagtt
ttgtgtaaagaagtgtgggccttcttggaggaaatgtgtcactatagagc
tggactttgatgtcttataagctccagtctatcatagtcttcccttctga
tgtctaagcatcaagacgtagaaatcctcagttggccttttccaacccca
ttgttttgcctacatggcagccattttttttctcaatcattattatattg
gacctaaaccctctaaagcccattcctaagctaatgttttctttagaaga
agttaacctggaacatgggggtgtgtctccaca
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaacgctgacaccattgcatacactagcaagattttatttgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcataggggcttcc
aatggaggagctagagaaagtagccaagggagctaaagggatctgcaacc
ctataggtggaacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103367038_103368201
seq2: B6Ng01-303E13.b_43_1225

seq1  GAATTCAAGCCCTCTGCAAGAACCTTCAGAACTGGTAACCACCAATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCCTCTGCAAGAACCTTCAGAACTGGTAACCACCAATCCCT  50

seq1  CTTAAATCTACTGTCATACTTGTTTAATTCAACTACTTAGATTCTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCTACTGTCATACTTGTTTAATTCAACTACTTAGATTCTATTTT  100

seq1  TTTAAACTTTAAAGTGACTGTAATTGTTTATAGAAAAGACTGAAGACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTTAAAGTGACTGTAATTGTTTATAGAAAAGACTGAAGACTCA  150

seq1  ATACTGAATTTTCAGTGTTACTTGCATGATTTGTTCTTTATAGTGTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAATTTTCAGTGTTACTTGCATGATTTGTTCTTTATAGTGTAAGG  200

seq1  AATAATTTTGTTTATATGATTTTTAAAAATCGAACTGGATTTCAGATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTGTTTATATGATTTTTAAAAATCGAACTGGATTTCAGATTCT  250

seq1  GTATCAGGAACAGGTTGGATAAAATTTTCATTCATCCCAAACCACCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGAACAGGTTGGATAAAATTTTCATTCATCCCAAACCACCAATT  300

seq1  TCAGGGGAGGCACAGCTGTTAGGGAAAGTGAGGTGGGTCCCTAGAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGAGGCACAGCTGTTAGGGAAAGTGAGGTGGGTCCCTAGAGAAGG  350

seq1  TTTTAGAAGCTTTGAATGTTTAAAAAGTATTTAACATATCCTGTTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGCTTTGAATGTTTAAAAAGTATTTAACATATCCTGTTGCTTT  400

seq1  GAGGAGCAGATGCTAAAGATGCACACAGTCCTTGTGGATTGATTTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCAGATGCTAAAGATGCACACAGTCCTTGTGGATTGATTTCAAAG  450

seq1  CTGGCCACATTGTCTGTTAATGATGAAAGACCTAAATAAGCCACAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACATTGTCTGTTAATGATGAAAGACCTAAATAAGCCACAATTTT  500

seq1  GTTGAAGAAGAGTACATTGTATATGCAAGGCTACCAAATAATAAAAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGAAGAGTACATTGTATATGCAAGGCTACCAAATAATAAAAAGGA  550

seq1  GATTTTTCACAGGAAATATGAAGGAACTGATCTGCTCATTGACTAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTCACAGGAAATATGAAGGAACTGATCTGCTCATTGACTAAGAGT  600

seq1  CATATAGGAAATTTAAAGAACTCATATGAAATGTGCTTCAGCCGCCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGGAAATTTAAAGAACTCATATGAAATGTGCTTCAGCCGCCATGT  650

seq1  CTTTTGTTTCTATGACTGTATGCCAAATTTCACTTCTTTTTTTAGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTCTATGACTGTATGCCAAATTTCACTTCTTTTTTTAGAAGTC  700

seq1  TTCATGAATTCACATGTGTGATCTTCTCTGACAGGGCATCAGATGATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAATTCACATGTGTGATCTTCTCTGACAGGGCATCAGATGATGTC  750

seq1  CTGTAGATGTGTTTTATGCCAAGCTACACTAAACTATAGCTATTGGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATGTGTTTTATGCCAAGCTACACTAAACTATAGCTATTGGAGCC  800

seq1  ACATTTATCATAAAAACTATGTGGTTTTATATGAATGTCCCCACAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATCATAAAAACTATGTGGTTTTATATGAATGTCCCCACAGTCTC  850

seq1  CTGTGTGCATTCTTGGCACACAGAGAGTATCAGTACTAAGTGATGTAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCATTCTTGGCACACAGAGAGTATCAGTACTAAGTGATGTAGTT  900

seq1  TTGTGTAAAGAAGTGT-GGCCTTCTTGGAGGAAATGTGTCACTATAGAGC  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGTGTAAAGAAGTGTGGGCCTTCTTGGAGGAAATGTGTCACTATAGAGC  950

seq1  TGGACTTTGATGTCTTATAAGCTCCAGTCTATCATAGTCTT-CCTTCTGA  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGACTTTGATGTCTTATAAGCTCCAGTCTATCATAGTCTTCCCTTCTGA  1000

seq1  TGTCTAAGCATCAAGACGTAGAAAT-CTCAGTTG--CCTTTCCAACACCA  1045
      ||||||||||||||||||||||||| ||||||||  | |||||||| |||
seq2  TGTCTAAGCATCAAGACGTAGAAATCCTCAGTTGGCCTTTTCCAACCCCA  1050

seq1  T--GTTTGCCTACAT-GCAGCCA---TTTTTCTC-ATCATAATAATAATG  1088
      |   ||||||||||| |||||||   |||||||| ||||| || ||| ||
seq2  TTGTTTTGCCTACATGGCAGCCATTTTTTTTCTCAATCATTATTATATTG  1100

seq1  GA-CTAAA-CCTCTAAAG-CCATCCCTAGTTAAATGTTTTTCTTTAGAAG  1135
      || ||||| ||||||||| |||| ||||    |||| |||||||||||||
seq2  GACCTAAACCCTCTAAAGCCCATTCCTAAGCTAATG-TTTTCTTTAGAAG  1149

seq1  -AGTTACCCTGG-ACAT---GGTGTGTCTTCACA  1164
       ||||| ||||| ||||   ||||||||| ||||
seq2  AAGTTAACCTGGAACATGGGGGTGTGTCTCCACA  1183

seq1: chrX_163770282_163770479
seq2: B6Ng01-303E13.g_886_1084 (reverse)

seq1  TGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCT-CCTTGGGTACTT  49
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  TGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCCTTGGCTACTT  50

seq1  TCTCTAGCTCCTCCATTGG-GGGCCCTGTGATCCATCAAATAGCTGACTG  98
      |||||||||||||||||||  | |||| ||||||||| | ||||||||||
seq2  TCTCTAGCTCCTCCATTGGAAGCCCCTATGATCCATCCATTAGCTGACTG  100

seq1  TGAGCATCCACTTTTGTGTTTGCTAGGCCCAAGAATAGTCTCACAAGAGA  148
      ||||||||||||| |||||||||| |||||  | ||||||||||||||||
seq2  TGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGA  150

seq1  CAGCTATATCACGGGTTTTTTTCAGCAAAATCTTGCTAGTGTATGCAATG  198
      |||||| |||  | ||  |||  |  ||||||||||||||||||||||||
seq2  CAGCTACATC-TGCGTCCTTTCAAATAAAATCTTGCTAGTGTATGCAATG  199