BAC Information

Click to search

BAC

Clone NameB6Ng01-304F14
ChromosomeX (Build37)
Map Location 35,632,463 - 35,774,754
singlet/doubletdoublet
Overlap geneEG665331, Atp1b4, Gm40, EG227112, Lamp2
Upstream geneUpf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8, LOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik, Rhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik
Downstream geneLOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304F14.bB6Ng01-304F14.g
ACCGA097929GA097930
length8741,127
definitionB6Ng01-304F14.b B6Ng01-304F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,632,463 - 35,633,329)(35,773,641 - 35,774,754)
sequence
gaattccagagtacaaagcctcagagagactaaccagttgtgccttcaag
aatcttgagaaggggctatataaatggctcagtggctaagagcacagact
gctcttccagaggatgcaggtttgattcccagcagccacacggcagctca
caaccatctgtacctcaacttctaaggcatccatcaccttcttctggcct
cctcagatgcacagaaatacttgcaagcaaaacattcatgcccacaaatt
aaaacggatgaatctcttttgaagagtatggggaacttcaagtagcattg
tgagtgatttggaagaacagtaatggaacatggcagaggacattggaaat
ggcatgtgaatgcctgagagtcaggaaagccctgtcatgtgaagagaatg
gggaggggagtagtttgaggtggctggaaagcaatgctggagatcccagg
agtgtgacaatggaaactgggaggaaagatgcagccagaatagaagaggt
ggagaaattcctcctctcagattccctctcatcccaatggtagcactctc
agtattcctgcttctaaagaagaattagtgctggagatcagatcgggtaa
aagcaatcaagtaaccaatggcttattgcagcaggcaattgaaaataaaa
gcagaaagtaaacacactctccagggtagagggagcaccaaacaggcgca
atggcaaagggcttggatttcattagaggttaacctaccattttctcctc
cccttgccccacccctggaggcaggctggagtgctttccttcctggaata
ggcagaggctttcttagaggcatctttccccacaattcaatctgctcaat
gtatttcaatttgttaagatgtaa
gaattccaaatactatcaactacaaatgaatcatatgattttggttttcc
tgactaaggagtttaaaattactatggcaaaaggcatgtacaaaattatc
tggttctgtttcactggtctggaatttctgaatgagaacgtccagtgtag
gaaaaagccggtttcttctgcctgcatgaaattgagtttggccatcctga
tttccagtggatttgtacttgctccttttgcattgcttgtgacttttgtt
tgcaggttgacttagctacttcggccttgttccatatttgacctatgaaa
aaggtatcagtagatttgaacagagcccagaggtaccatgctcttgccag
taaaattcttttcccatgtttttgaatacatttgtatttaatgtggctga
aatgacaaaaacaaaggtcctaaattttagaatagatgttatctttttat
ttaatctttaaaaaaaaaaactggatgtttcaatcttttaaattgcaaga
cacaaggcaattccaactgggcatttcaatctggttttaggtgctttaga
gataattgctaggcagtgccaaatgaaggcattagtgctttgtacccaga
aattggcctctacatgcagcactaagattaatgcagatttctcttgaacc
ttccagtcttccttgttggtggtaatgtgctttgttctttcctttttttc
ctcaagaagaaatgttagtatgtcttagaacctaggtaacgaagtgcact
tatgctcataaaattgcttgcacctaatccaaaagtcatggtcttgcctt
agtccattaacatggtcttcatttccagtttgcattgactgctacagcac
ttactaatttggcttttatgtttaaatggttctgtgataatcaaaactta
aatagttactgttcgttcattggtggtacttttgtattcagttctgtact
tcagagatggccaccaaattgttcatttacttatgcaccacctactgcct
tattataaggagaactaataactcctttcagccccgatacttacacatca
tgtattcctttgcagcttctaaggacatcttcatacatgtatggatgttg
tacatacattatacatgtgttacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_35632463_35633329
seq2: B6Ng01-304F14.b_46_919

seq1  GAATTCCAGAGTACAAAGCCTCAGAGAGACTAACCAGTTGTGCCTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTACAAAGCCTCAGAGAGACTAACCAGTTGTGCCTTCAAG  50

seq1  AATCTTGAGAAGGGGCTATATAAATGGCTCAGTGGCTAAGAGCACAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGAGAAGGGGCTATATAAATGGCTCAGTGGCTAAGAGCACAGACT  100

seq1  GCTCTTCCAGAGGATGCAGGTTTGATTCCCAGCAGCCACACGGCAGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCAGAGGATGCAGGTTTGATTCCCAGCAGCCACACGGCAGCTCA  150

seq1  CAACCATCTGTACCTCAACTTCTAAGGCATCCATCACCTTCTTCTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTGTACCTCAACTTCTAAGGCATCCATCACCTTCTTCTGGCCT  200

seq1  CCTCAGATGCACAGAAATACTTGCAAGCAAAACATTCATGCCCACAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATGCACAGAAATACTTGCAAGCAAAACATTCATGCCCACAAATT  250

seq1  AAAACGGATGAATCTCTTTTGAAGAGTATGGGGAACTTCAAGTAGCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGATGAATCTCTTTTGAAGAGTATGGGGAACTTCAAGTAGCATTG  300

seq1  TGAGTGATTTGGAAGAACAGTAATGGAACATGGCAGAGGACATTGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTTGGAAGAACAGTAATGGAACATGGCAGAGGACATTGGAAAT  350

seq1  GGCATGTGAATGCCTGAGAGTCAGGAAAGCCCTGTCATGTGAAGAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTGAATGCCTGAGAGTCAGGAAAGCCCTGTCATGTGAAGAGAATG  400

seq1  GGGAGGGGAGTAGTTTGAGGTGGCTGGAAAGCAATGCTGGAGATCCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAGTAGTTTGAGGTGGCTGGAAAGCAATGCTGGAGATCCCAGG  450

seq1  AGTGTGACAATGGAAACTGGGAGGAAAGATGCAGCCAGAATAGAAGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACAATGGAAACTGGGAGGAAAGATGCAGCCAGAATAGAAGAGGT  500

seq1  GGAGAAATTCCTCCTCTCAGATTCCCTCTCATCCCAATGGTAGCACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATTCCTCCTCTCAGATTCCCTCTCATCCCAATGGTAGCACTCTC  550

seq1  AGTATTCCTGCTTCTAAAGAAGAATTAGTGCTGGAGATCAGATCGGGT-A  599
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTATTCCTGCTTCTAAAGAAGAATTAGTGCTGGAGATCAGATCGGGTAA  600

seq1  AAGCAATCAAGTAACCAA-GGCTTATTGCAGCAGGCAATTGAAAATAAAA  648
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGCAATCAAGTAACCAATGGCTTATTGCAGCAGGCAATTGAAAATAAAA  650

seq1  GCAGAAAGTAAACACACTCTCCAGGGTAGAGGGAGCACCAAACAGGCGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGTAAACACACTCTCCAGGGTAGAGGGAGCACCAAACAGGCGCA  700

seq1  ATGGCAAAGGGC-TGGA-TTCATTAGAGG-TAACCTACCATTTTCTCCTC  745
      |||||||||||| |||| ||||||||||| ||||||||||||||||||||
seq2  ATGGCAAAGGGCTTGGATTTCATTAGAGGTTAACCTACCATTTTCTCCTC  750

seq1  CCCTTG-CCCACCCCTGG-GGCAGGCTGGAGTGCTTTCCTTCCTGGAATA  793
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTTGCCCCACCCCTGGAGGCAGGCTGGAGTGCTTTCCTTCCTGGAATA  800

seq1  GGCAGAGGCTTTCTTAGAAGGCATCTTTCCCCACAATTCAATCTGTTACA  843
      ||||||||||||||||| ||||||||||||||||||||||||||| | ||
seq2  GGCAGAGGCTTTCTTAG-AGGCATCTTTCCCCACAATTCAATCTGCT-CA  848

seq1  ATGTA-TTCAGTCTGTT-AGATGTAA  867
      ||||| |||| | |||| ||||||||
seq2  ATGTATTTCAATTTGTTAAGATGTAA  874

seq1: chrX_35773641_35774754
seq2: B6Ng01-304F14.g_66_1192 (reverse)

seq1  GTATGT-ACACATGTAT-ATGTATGTAC-ACATCCATACATGTATGGAAG  47
      |||||| |||||||||| |||||||||| |||||||||||||||| ||||
seq2  GTATGTAACACATGTATAATGTATGTACAACATCCATACATGTAT-GAAG  49

seq1  ATGTCC-TAGAAGCTGC-AAGGAATACATGATGTGTTAAGTATC-GGGCT  94
      |||||| |||||||||| ||||||||||||||||| |||||||| |||||
seq2  ATGTCCTTAGAAGCTGCAAAGGAATACATGATGTG-TAAGTATCGGGGCT  98

seq1  GAAA-GAGTTATTAGTTCT-CTTAT-ATAA-GCAGTAGGTGGTGCAT-AG  139
      |||| |||||||||||||| ||||| |||| |||||||||||||||| ||
seq2  GAAAGGAGTTATTAGTTCTCCTTATAATAAGGCAGTAGGTGGTGCATAAG  148

seq1  TAAATGAACAA-TTGGT-GCCATCTCTG-AGTACAGAACTGAATACAAAA  186
      ||||||||||| ||||| |||||||||| |||||||||||||||||||||
seq2  TAAATGAACAATTTGGTGGCCATCTCTGAAGTACAGAACTGAATACAAAA  198

seq1  GTACCA-CAATGAACGAACAGTAACTATTTAAGTTTTGATTATCACAGAA  235
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACCAATGAACGAACAGTAACTATTTAAGTTTTGATTATCACAGAA  248

seq1  CCATTTAAACATAAAAGCCAAATTAGTAAGTGCTGTAGCAGTCAATGCAA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAACATAAAAGCCAAATTAGTAAGTGCTGTAGCAGTCAATGCAA  298

seq1  ACTGGAAATGAAGACCATGTTAATGGACTAAGGCAAGACCATGACTTTTG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATGAAGACCATGTTAATGGACTAAGGCAAGACCATGACTTTTG  348

seq1  GATTAGGTGCAAGCAATTTTATGAGCATAAGTGCACTTCGTTACCTAGGT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGTGCAAGCAATTTTATGAGCATAAGTGCACTTCGTTACCTAGGT  398

seq1  TCTAAGACATACTAACATTTCTTCTTGAGGAAAAAAAGGAAAGAACAAAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGACATACTAACATTTCTTCTTGAGGAAAAAAAGGAAAGAACAAAG  448

seq1  CACATTACCACCAACAAGGAAGACTGGAAGGTTCAAGAGAAATCTGCATT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACCACCAACAAGGAAGACTGGAAGGTTCAAGAGAAATCTGCATT  498

seq1  AATCTTAGTGCTGCATGTAGAGGCCAATTTCTGGGTACAAAGCACTAATG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGTGCTGCATGTAGAGGCCAATTTCTGGGTACAAAGCACTAATG  548

seq1  CCTTCATTTGGCACTGCCTAGCAATTATCTCTAAAGCACCTAAAACCAGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTTGGCACTGCCTAGCAATTATCTCTAAAGCACCTAAAACCAGA  598

seq1  TTGAAATGCCCAGTTGGAATTGCCTTGTGTCTTGCAATTTAAAAGATTGA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGCCCAGTTGGAATTGCCTTGTGTCTTGCAATTTAAAAGATTGA  648

seq1  AACATCCAGTTTTTTTTTTTAAAGATTAAATAAAAAGATAACATCTATTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCAGTTTTTTTTTTTAAAGATTAAATAAAAAGATAACATCTATTC  698

seq1  TAAAATTTAGGACCTTTGTTTTTGTCATTTCAGCCACATTAAATACAAAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTAGGACCTTTGTTTTTGTCATTTCAGCCACATTAAATACAAAT  748

seq1  GTATTCAAAAACATGGGAAAAGAATTTTACTGGCAAGAGCATGGTACCTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAAAAACATGGGAAAAGAATTTTACTGGCAAGAGCATGGTACCTC  798

seq1  TGGGCTCTGTTCAAATCTACTGATACCTTTTTCATAGGTCAAATATGGAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTGTTCAAATCTACTGATACCTTTTTCATAGGTCAAATATGGAA  848

seq1  CAAGGCCGAAGTAGCTAAGTCAACCTGCAAACAAAAGTCACAAGCAATGC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCGAAGTAGCTAAGTCAACCTGCAAACAAAAGTCACAAGCAATGC  898

seq1  AAAAGGAGCAAGTACAAATCCACTGGAAATCAGGATGGCCAAACTCAATT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGCAAGTACAAATCCACTGGAAATCAGGATGGCCAAACTCAATT  948

seq1  TCATGCAGGCAGAAGAAACCGGCTTTTTCCTACACTGGACGTTCTCATTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGGCAGAAGAAACCGGCTTTTTCCTACACTGGACGTTCTCATTC  998

seq1  AGAAATTCCAGACCAGTGAAACAGAACCAGATAATTTTGTACATGCCTTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCAGACCAGTGAAACAGAACCAGATAATTTTGTACATGCCTTT  1048

seq1  TGCCATAGTAATTTTAAACTCCTTAGTCAGGAAAACCAAAATCATATGAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGTAATTTTAAACTCCTTAGTCAGGAAAACCAAAATCATATGAT  1098

seq1  TCATTTGTAGTTGATAGTATTTGGAATTC  1114
      |||||||||||||||||||||||||||||
seq2  TCATTTGTAGTTGATAGTATTTGGAATTC  1127