BAC Information

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BAC

Clone NameB6Ng01-305F05
ChromosomeX (Build37)
Map Location 109,427,626 - 109,428,733
singlet/doubletsinglet
Overlap geneApool
Upstream geneRps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407
Downstream geneSatl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305F05.bB6Ng01-305F05.g
ACCGA098643GA098644
length1,1641,150
definitionB6Ng01-305F05.b B6Ng01-305F05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcgctgtgcccatatctttgaggcttttccccacattctcct
ctataagtttcagtgtctctggttttatgtgaagttccttgatccactta
gactttaccttagtacaaggagataagaatggatcaattcgcattcttct
acataataactgtcagttgtgccagcaccatttgttgaaaatgctgtctt
tttttcactggatggttttagcccccttgtcaaagatcaagtgaccagag
gtgtgtgggttgctttctgggtcttcagttctattccattgttctacctg
tctgtctctctaccagtaccatgcactttttaatcacaattgctctctag
tatagctttaggtaaggcatagtgattccactagaggttcttttatcctt
gagaagagtttttgctatcctaggttttttgttattccagatgaatttgc
agattgctccttctaattcgttgaagaattgagttagaattttgatgggg
attgcattggatctgtagattgcttttgtcaagacagccatttttactat
attgaacctgccaatccatgagcatgggagatctttccatcttctgagat
cttctttgatttccttcttcagagacttgaagttcttatcatacaggtct
tttacttccttagttagagtcacaccaaggtattttatattatttgtgac
tattgtgaagggtgtttccctgatttctttctcatcccgtttatcgtttg
tgtagagaaaggtcattgatttgtttgagttaatttttattttattttta
tttttttattatgtattttcctcaattacatttccaatgctatcccaaaa
gtcccccataccctcccccccccaccctacgcatccattcccactttttt
gggccctggcgttcccctgtactggggcattataaagtttgcatgtccaa
tggggccttgcccttttccagtgatggccgactaggccatcttctgatac
atatgcagctagagtcaagagctccggggtactggtttagtctattgttg
tccaactataaggtggagacctttagctccttggcaattctctagcttca
tcattggagccatgtgaaccaatcccaataagctgactgtgagacatcca
ggtcgtgtgttttg
gaattcaaaaattctgtttgcttacctaagatcaagccagtcaaacttcc
agcaaggatccgagaggacctcctcagccctaaggaggagccatggagag
tttgactgcagggaaggggagagtcagttttcctcagtggtctaacccca
agtctgcagaccatactccactggatgactccacacctatacccacactt
cactgaatggcccttatttcaatgggttaaaaagaaaaggaggaaggcaa
gagaacagaagaaaaggaggaggtgataaaggtgacgaagacatttccta
ccacatggcagggatggagcagggatagaaggacagctttcctcttcttt
ttctctatataggcctctgtacaccaggcaggccttgaactcggcaatct
atctctgcttcctgagtgcttcctgagtgcactcagtgagggataaaaga
catgaggcatcatgtgtaactagaacagctttggttaatccatgataact
attttatacttgaaagggaattctctacaaaaacatctacattcaaattt
ctagtttcctgcttgaaggatgatgtgagaaagacaacatatgacagctg
acaaggggtttccacagagggactttttcttagcaaaaggaaaggagcaa
aagatccatgttcttagccaaatgtcactgctagagaagcctccaatttc
cttctactgcacagtagctgactaacactgtgtgctacaacatctccaaa
agcagcagagtggggattaccacagagtaccacagtccacagtccagcgc
tatggggcaccaaaccaccacagaccaccaaggctgaggggataaccaag
agacagacatctttcagcttgtggccaacgcctcaactcacaacgactct
ggagctcccggtgacttagaccaatatttggaactctgggttgttgctgg
accttctgggattggacagcttctcatgaatttgctgtttggttgctttc
tgggtgtcacaactgataattttgccaggagcctgctgtagagaggctac
ctcagtagcccaggaactttggccatttaaacctgccaaaaaatatttta
attctttcaaacagcttggggtgaagtacaaatgtgcattcccaggatat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109427626_109428733
seq2: B6Ng01-305F05.g_69_1218 (reverse)

seq1  ATATCCT-GGTATCCA---TTGTACTTTCACC---AGCTGTTTG-AAGA-  41
      ||||||| || || ||   |||||| ||||||   ||||||||| |||| 
seq2  ATATCCTGGGAATGCACATTTGTAC-TTCACCCCAAGCTGTTTGAAAGAA  49

seq1  -TTAAATATTTT---GCAGTTTTAA--TGCCAA--GTCCT-GGCT-CTGA  81
       | |||||||||   |||| |||||   |||||   |||| |||| ||||
seq2  TTAAAATATTTTTTGGCAGGTTTAAATGGCCAAAGTTCCTGGGCTACTGA  99

seq1  -GTTGC--TTCTACAGCA-GCTCCTG--CAAACTATCAGTTGTG---CCC  122
       || ||   ||||||||| |||||||   ||| |||||||||||   |||
seq2  GGTAGCCTCTCTACAGCAGGCTCCTGGCAAAATTATCAGTTGTGACACCC  149

seq1  AG-GAGCA--CCAACAGCAA--TCATGAG-AGCTGTCCA--TCCAGAAGG  164
      ||  ||||  | ||||||||  ||||||| |||||||||   ||||||||
seq2  AGAAAGCAACCAAACAGCAAATTCATGAGAAGCTGTCCAATCCCAGAAGG  199

seq1  T-CAGC-ACAAACCAGAGT--CCAATATTGGTCTAAGTCACC-GGAGCTC  209
      | |||| |||| |||||||  | ||||||||||||||||||| |||||||
seq2  TCCAGCAACAACCCAGAGTTCCAAATATTGGTCTAAGTCACCGGGAGCTC  249

seq1  CAGAGTCGTTGTGAGTTGAGGCGTTGGCCACAAGCTGAAAGATGTCTGTC  259
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCGTTGTGAGTTGAGGCGTTGGCCACAAGCTGAAAGATGTCTGTC  299

seq1  TCTTGGTTATCCCCTCAGCCTTGGTGGTCTGTGGTGGTTTGGTGCCCCAT  309
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTATCCCCTCAGCCTTGGTGGTCTGTGGTGGTTTGGTGCCCCAT  349

seq1  AGCGCTGGACTGTGGACTGTGGTACTCTGTGGTAAT-CCCACTCTGCTGC  358
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCGCTGGACTGTGGACTGTGGTACTCTGTGGTAATCCCCACTCTGCTGC  399

seq1  TTTTGGAGATGTTGTAGCACACAGTGTTAGTCAGCTACTGTGCAGTAGAA  408
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGATGTTGTAGCACACAGTGTTAGTCAGCTACTGTGCAGTAGAA  449

seq1  GGAAATTGGAGGCTTCTCTAGCAGTGACATTTGGCTAAG-ACATGGATCT  457
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAAATTGGAGGCTTCTCTAGCAGTGACATTTGGCTAAGAACATGGATCT  499

seq1  TTTGCTCCTTTCCTTTTGCTAAGAAAAAGTCCCTCTGTGGAAACCCCTTG  507
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCTTTCCTTTTGCTAAGAAAAAGTCCCTCTGTGGAAACCCCTTG  549

seq1  TCAGCTGTCATATGTTGTCTTTCTCACATCATCCTTCAAGCAGGAAACTA  557
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTCATATGTTGTCTTTCTCACATCATCCTTCAAGCAGGAAACTA  599

seq1  GAAATTTGAATGTAGATGTTTTTGTAGAGAATTCCCTTTCAAGTATAAAA  607
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGAATGTAGATGTTTTTGTAGAGAATTCCCTTTCAAGTATAAAA  649

seq1  TAGTTATCATGGATTAACCAAAGCTGTTCTAGTTACACATGATGCCTCAT  657
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCATGGATTAACCAAAGCTGTTCTAGTTACACATGATGCCTCAT  699

seq1  GTCTTTTATCCCTCACTGAGTGCACTCAGGAAGCACTCAGGAAGCAGAGA  707
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTATCCCTCACTGAGTGCACTCAGGAAGCACTCAGGAAGCAGAGA  749

seq1  TAGATTGCCGAGTTCAAGGCCTGCCTGGTGTACAGAGGCCTATATAGAGA  757
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCCGAGTTCAAGGCCTGCCTGGTGTACAGAGGCCTATATAGAGA  799

seq1  AAAAGAAGAGGAAAGCTGTCCTTCTATCCCTGCTCCATCCCTGCCATGTG  807
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGGAAAGCTGTCCTTCTATCCCTGCTCCATCCCTGCCATGTG  849

seq1  GTAGGAAATGTCTTCGTCACCTTTATCACCTCCTCCTTTTCTTCTGTTCT  857
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAATGTCTTCGTCACCTTTATCACCTCCTCCTTTTCTTCTGTTCT  899

seq1  CTTGCCTTCCTCCTTTTCTTTTTAACCCATTGAAATAAGGGCCATTCAGT  907
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCCTCCTTTTCTTTTTAACCCATTGAAATAAGGGCCATTCAGT  949

seq1  GAAGTGTGGGTATAGGTGTGGAGTCATCCAGTGGAGTATGGTCTGCAGAC  957
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTGGGTATAGGTGTGGAGTCATCCAGTGGAGTATGGTCTGCAGAC  999

seq1  TTGGGGTTAGACCACTGAGGAAAACTGACTCTCCCCTTCCCTGCAGTCAA  1007
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTAGACCACTGAGGAAAACTGACTCTCCCCTTCCCTGCAGTCAA  1049

seq1  ACTCTCCATGGCTCCTCCTTAGGGCTGAGGAGGTCCTCTCGGATCCTTGC  1057
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCATGGCTCCTCCTTAGGGCTGAGGAGGTCCTCTCGGATCCTTGC  1099

seq1  TGGAAGTTTGACTGGCTTGATCTTAGGTAAGCAAACAGAATTTTTGAATT  1107
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTTGACTGGCTTGATCTTAGGTAAGCAAACAGAATTTTTGAATT  1149

seq1  C  1108
      |
seq2  C  1150