BAC Information

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BAC

Clone NameB6Ng01-308A21
ChromosomeX (Build37)
Map Location 88,607,657 - 88,710,134
singlet/doubletdoublet
Overlap geneEG278167
Upstream geneLOC194615, LOC629471, LOC100041815, Gm44, LOC670074, LOC667972, LOC667976, Mageb2
Downstream geneEG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308A21.bB6Ng01-308A21.g
ACCGA100656GA100657
length1,0781,151
definitionB6Ng01-308A21.b B6Ng01-308A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,607,657 - 88,608,737)(88,708,975 - 88,710,134)
sequence
gaattcttctacatttgtaggttaaataaacagtcacctgcagtagataa
tgtgatattagaaataacttaaaaagatcagtggtcatccaaattataca
ggtcatatcatccttgtgggatgtcaatttttctagccaagcaacacaag
gagtcagactctggcaagtaaagaaagaaataaatcaatgtatgtaattt
ttccctcagacaacccctaatccaccttgaacttttgtcttttgccaagg
gttgcctacctcacatctatcctgagaccttgactcattctcagtcaagg
gtccagttgttcaaaggctcaaggaaactataaagcctttcatcaaaaag
caatgaacatccacatgacagagaactgaggtgattgcaaaccttagaat
ataagaatgaacatatctttgctcctgcatttagcccatcaagatataca
atagctgtctttagatgttactgaggcagtactgagactgtcaaaagagg
gatcttaattcactataaagaatgtttgaatttccagttatcttccagat
gctgtctcctgtaaggtcatgctgttctccacatctcccagctcatccag
cccaccaatcattcttcagatgcatgaaattgtcaacagtttactctaag
actagctgagtattatagaagccctacctagtagtgaaatctcaagaaaa
tatcttcaagtcaggaaaataaattttgtttacaccccatattatcatta
tgttttgtattgttttgtttttttaatcactgaagttaactctaaacctg
agtacccatttcttttctaaaacacaaacaaccatcgatcttcaaactag
attcaacatggcaagaagtggatgctttccatgtgtgctaagatacgaag
attaaaacaagatgggataaattcacacacacacacacacacacagatat
atttgatttttgacatataaaacaccagtaatgaaagcattaattgatta
acagttttatataatgtaggaaataaataagtaaatcctatgcaaatact
tttggaaatattggaggaaatgtgacaa
gaattcttttccatgactaattttagttaatattttttcagtataaaagc
agtaagaattattatggcatattgaggaaataacccctgtatcattatat
tatgcaccttgtttacaataactttctttgatctaggatctgctaagatc
atacatatgactactggcacaattctagcaagacgaatacaggtgctatg
ttttcccatacctttattttcaatatactcctatcgtcatatttaaaata
aattcttatagccaacatacaatttagctttgtctaatattttctgttac
ttctcaaatctcagttggcatatttagagcatcactgacatttaaggttt
tattttctctttcaagtgtttaataatcactttcatacattttagttatt
cttaaaatataagcatatttgaacaaggggttgtcttataaatctactga
gaatagagagcaaaagatctttttttttttttaaccttcattcattctgt
agtactagtcctttgtgtagatctgaggtttcgacttccacaattcttat
tcacaaaaggaaaccttttacattattccaaggattttgatgaaaaaaaa
ttgactttattttcagtgagtcctttgttctttgtttagaaataattttt
ttgctggtcatgggtctgtagattgtttgttcttatttctttttaatgtg
ttgtgtctcttactttattctgtcatatctctgtttacattacccattta
atttacttattatctacctttaccattatggcccttagcatatccatcaa
aggtactttacttccgtttggtattagttcttagttttttgcttcaatct
cttttgtctcctagtatgctttgttatattgtatataatgtcttaatagt
aactaagttaattaggtgattagtgtgcagtattagatcttcatacttaa
aaggctgtttactgaactgtagatgatagaggcttagcctttgctgatgt
attagatgtatgctccctattttcttagacgtgcgttctttcatagtgtt
gttatgttgagtggagaccacccttgatgtggttagaaagtggaaggtga
ggaaagcttgtataacctcatgatgggcttcgattctcaggtgagtctct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_88607657_88608737
seq2: B6Ng01-308A21.b_46_1123

seq1  GAATTCTTCTACATTTGTAGGTTAAATAAACAGTCACCTGCAGTAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTACATTTGTAGGTTAAATAAACAGTCACCTGCAGTAGATAA  50

seq1  TGTGATATTAGAAATAACTTAAAAAGATCAGTGGTCATCCAAATTATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATTAGAAATAACTTAAAAAGATCAGTGGTCATCCAAATTATACA  100

seq1  GGTCATATCATCCTTGTGGGATGTCAATTTTTCTAGCCAAGCAACACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATATCATCCTTGTGGGATGTCAATTTTTCTAGCCAAGCAACACAAG  150

seq1  GAGTCAGACTCTGGCAAGTAAAGAAAGAAATAAATCAATGTATGTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGACTCTGGCAAGTAAAGAAAGAAATAAATCAATGTATGTAATTT  200

seq1  TTCCCTCAGACAACCCCTAATCCACCTTGAACTTTTGTCTTTTGCCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCAGACAACCCCTAATCCACCTTGAACTTTTGTCTTTTGCCAAGG  250

seq1  GTTGCCTACCTCACATCTATCCTGAGACCTTGACTCATTCTCAGTCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTACCTCACATCTATCCTGAGACCTTGACTCATTCTCAGTCAAGG  300

seq1  GTCCAGTTGTTCAAAGGCTCAAGGAAACTATAAAGCCTTTCATCAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTTGTTCAAAGGCTCAAGGAAACTATAAAGCCTTTCATCAAAAAG  350

seq1  CAATGAACATCCACATGACAGAGAACTGAGGTGATTGCAAACCTTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACATCCACATGACAGAGAACTGAGGTGATTGCAAACCTTAGAAT  400

seq1  ATAAGAATGAACATATCTTTGCTCCTGCATTTAGCCCATCAAGATATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATGAACATATCTTTGCTCCTGCATTTAGCCCATCAAGATATACA  450

seq1  ATAGCTGTCTTTAGATGTTACTGAGGCAGTACTGAGACTGTCAAAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTCTTTAGATGTTACTGAGGCAGTACTGAGACTGTCAAAAGAGG  500

seq1  GATCTTAATTCACTATAAAGAATGTTTGAATTTCCAGTTATCTTCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAATTCACTATAAAGAATGTTTGAATTTCCAGTTATCTTCCAGAT  550

seq1  GCTGTCTCCTGTAAGGTCATGCTGTTCTCCACATCTCCCAGCTCATCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCTGTAAGGTCATGCTGTTCTCCACATCTCCCAGCTCATCCAG  600

seq1  CCCACCAATCATTCTTCAGATGCATGAAATTGTCAACAGTTTACTCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAATCATTCTTCAGATGCATGAAATTGTCAACAGTTTACTCTAAG  650

seq1  ACTAGCTGAGTATTATAGAAGCCCTACCTAGTAGTGAAATCTCAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTGAGTATTATAGAAGCCCTACCTAGTAGTGAAATCTCAAGAAAA  700

seq1  TATCTTCAAGTCAGGAAAATAAATTTTGTTTACACCCCATATTATCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAGTCAGGAAAATAAATTTTGTTTACACCCCATATTATCATTA  750

seq1  TGTTTTGTATTGTTTTGTTTTTTTAATCACTGAAGTTAACTCTAAACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTATTGTTTTGTTTTTTTAATCACTGAAGTTAACTCTAAACCTG  800

seq1  AGTACCCATTTCTTTTCTAAAACACAAACAACCATCGATCTTCAAACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCATTTCTTTTCTAAAACACAAACAACCATCGATCTTCAAACTAG  850

seq1  ATTCAACATGGCAAGAAGTGGATGCTTTCCATGTGTGCTAAGATACGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACATGGCAAGAAGTGGATGCTTTCCATGTGTGCTAAGATACGAAG  900

seq1  ATTAAAACAAGATGGGATAAAATTCACACACACACACACACACACAGATA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTAAAACAAGATGGGAT-AAATTCACACACACACACACACACACAGATA  949

seq1  TATTTGATTTTTGAACATATTAAAACACCAGTAATGAAAGCATTAATTGA  1000
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  TATTTGATTTTTG-ACATA-TAAAACACCAGTAATGAAAGCATTAATTGA  997

seq1  TTAACAGTTTTATATAATGTAGGAAATAAATAAGTAAATCCTATGCAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTTTTATATAATGTAGGAAATAAATAAGTAAATCCTATGCAAAT  1047

seq1  ACTTTTGGAAATATGGAAGGAAATGTGACAA  1081
      |||||||||||||| | ||||||||||||||
seq2  ACTTTTGGAAATATTGGAGGAAATGTGACAA  1078

seq1: chrX_88708975_88710134
seq2: B6Ng01-308A21.g_66_1216 (reverse)

seq1  CAGAGACTCA-CTGAGATTCTGAAGCCCCATCATGAGGTTATACAAGGCT  49
      |||||||||| |||||| || |||| |||||||||||||||||||| |||
seq2  CAGAGACTCACCTGAGAATC-GAAG-CCCATCATGAGGTTATACAA-GCT  47

seq1  TCTCCTCACCTCACACTTTTCTAA-CACATCAAGGGTGGTTCTCAATTCA  98
      | |||||||||  ||| ||||||| |||||||||||||| |||| | |||
seq2  T-TCCTCACCTTCCAC-TTTCTAACCACATCAAGGGTGG-TCTCCACTCA  94

seq1  ACATAACAACACTATGGAAAGAACGGCACGTCTAAG-AAATAGGGAGCAT  147
      ||||||||||||||| |||||||| ||||||||||| |||||||||||||
seq2  ACATAACAACACTAT-GAAAGAAC-GCACGTCTAAGAAAATAGGGAGCAT  142

seq1  ACATCTAATAACATCAGCAAAGGCTTAAGCCTCTATCATCTACAGTTTCA  197
      ||||||||| |||||||||||||| |||||||||||||||||||| ||||
seq2  ACATCTAAT-ACATCAGCAAAGGC-TAAGCCTCTATCATCTACAG-TTCA  189

seq1  GTAAACAGCCTTTTAAGTATGAAGATTCTAATACTGCACACTAATCACCT  247
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAAACAGCCTTTTAAGTATGAAGA-TCTAATACTGCACACTAATCACCT  238

seq1  AATTAACTTAGTTACTATTAAGACATTATATACAATATAACAAAGCATAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTTAGTTACTATTAAGACATTATATACAATATAACAAAGCATAC  288

seq1  TAGGAGACAAAAGAGATTGAAGCAAAAAACTAAGAACTAATACCAAACGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACAAAAGAGATTGAAGCAAAAAACTAAGAACTAATACCAAACGG  338

seq1  AAGTAAAGTACCTTTGATGGATATGCTAAGGGCCATAATGGTAAAGGTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGTACCTTTGATGGATATGCTAAGGGCCATAATGGTAAAGGTAG  388

seq1  ATAATAAGTAAATTAAATGGGTAATGTAAACAGAGATATGACAGAATAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGTAAATTAAATGGGTAATGTAAACAGAGATATGACAGAATAAA  438

seq1  GTAAGAGACACAACACATTAAAAAGAAATAAGAACAAACAATCTACAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGACACAACACATTAAAAAGAAATAAGAACAAACAATCTACAGAC  488

seq1  CCATGACCAGCAAAAAAATTATTTCTAAACAAAGAACAAAGGACTCACTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAGCAAAAAAATTATTTCTAAACAAAGAACAAAGGACTCACTG  538

seq1  AAAATAAAGTCAATTTTTTTTCATCAAAATCCTTGGAATAATGTAAAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGTCAATTTTTTTTCATCAAAATCCTTGGAATAATGTAAAAGG  588

seq1  TTTCCTTTTGTGAATAAGAATTGTGGAAGTCGAAACCTCAGATCTACACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTGTGAATAAGAATTGTGGAAGTCGAAACCTCAGATCTACACA  638

seq1  AAGGACTAGTACTACAGAATGAATGAAGGTTAAAAAAAAAAAAAGATCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTAGTACTACAGAATGAATGAAGGTTAAAAAAAAAAAAAGATCTT  688

seq1  TTGCTCTCTATTCTCAGTAGATTTATAAGACAACCCCTTGTTCAAATATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTATTCTCAGTAGATTTATAAGACAACCCCTTGTTCAAATATG  738

seq1  CTTATATTTTAAGAATAACTAAAATGTATGAAAGTGATTATTAAACACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTTAAGAATAACTAAAATGTATGAAAGTGATTATTAAACACTT  788

seq1  GAAAGAGAAAATAAAACCTTAAATGTCAGTGATGCTCTAAATATGCCAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAAATAAAACCTTAAATGTCAGTGATGCTCTAAATATGCCAAC  838

seq1  TGAGATTTGAGAAGTAACAGAAAATATTAGACAAAGCTAAATTGTATGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAGAAGTAACAGAAAATATTAGACAAAGCTAAATTGTATGTT  888

seq1  GGCTATAAGAATTTATTTTAAATATGACGATAGGAGTATATTGAAAATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAAGAATTTATTTTAAATATGACGATAGGAGTATATTGAAAATAA  938

seq1  AGGTATGGGAAAACATAGCACCTGTATTCGTCTTGCTAGAATTGTGCCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGGAAAACATAGCACCTGTATTCGTCTTGCTAGAATTGTGCCAG  988

seq1  TAGTCATATGTATGATCTTAGCAGATCCTAGATCAAAGAAAGTTATTGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATATGTATGATCTTAGCAGATCCTAGATCAAAGAAAGTTATTGTA  1038

seq1  AACAAGGTGCATAATATAATGATACAGGGGTTATTTCCTCAATATGCCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTGCATAATATAATGATACAGGGGTTATTTCCTCAATATGCCAT  1088

seq1  AATAATTCTTACTGCTTTTATACTGAAAAAATATTAACTAAAATTAGTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTTACTGCTTTTATACTGAAAAAATATTAACTAAAATTAGTCA  1138

seq1  TGGAAAAGAATTC  1160
      |||||||||||||
seq2  TGGAAAAGAATTC  1151