BAC Information

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BAC

Clone NameB6Ng01-308K17
ChromosomeX (Build37)
Map Location 27,876,729 - 27,877,897
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898, LOC22526, EG664906, LOC664917
Downstream geneLOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386, LOC100039127, EG664944, LOC100039423, LOC100039145, LOC664951, LOC100042071, LOC664958, LOC664964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308K17.bB6Ng01-308K17.g
ACCGA101109GA101110
length1,1921,166
definitionB6Ng01-308K17.b B6Ng01-308K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttatctctgtccccattttttaatggggttatttgattt
tctggagtccagattcttgagctctttatatatattggatattagtcccc
atctgattttggattggtaaagattttttcccatctattggttgctgttt
tgtcctattgacagtgtcctttgacttatagaagctttgcaattttataa
gatcacatttgtctattcttaatcttacagcacaagccattgctgttctg
ttcaggaatttttcccttgtgcccatgtcttcgaagctcttccccacttc
ctcctctataagtttcagtgtctctggttttatgtggagttccttgatct
acctagacttgagcattgtgcaatgagatgaaaatagatcaatttgcatt
cttctacatgctaactgccaattgagccagcaccatttgttgaaaatgtt
gtctttttttccactggatggtttttgctcctttgtcaatgatcaagtga
caataggtgtgtgggttcatttctgtgtcttcagttctattccatttatc
tacctgtctatcagtatacctgtaccatgcagtttttatcacaattgctc
tatagtacagcttgaggtcaggcacggtgattccaggagagattctttta
ttgttgagaatagtttttgtatcctaggttttgttcttattccagatgaa
tttgcaaatagccctttctaactcagttaagaattgtgttggaattttca
tggggattgcattaaatctgtagactgctttcggcaagatagccattttt
actacattaatcctgccaatccatgagcatgggagatctttccatcttct
gagattttctttgattttttcttcagagacttgacatttttatcatacag
atccttctttcacttactcagttagagtcacaccaacgtattttatatta
tttgtgacaattctgacggtgttgtttccctaatttccttttcatctgtt
tatttctttttgtagaaaaatggcattgatatgtttgagttaattttgta
ttcagctactgcactgagctgtgtatatcagatttaaggatttctcttga
tgtaattttggggttcactaatataccaccgaatcttctggaaatggaac
ttgctttcttccagtgaatcaattgatctctttgttggatca
gaattcactaatgcacaggtgccacagaaatgtggatgatgtgaatcatg
catcctgcctctagtagccatattgaaatccattgcctgtgttgctcctg
aagggactgtaaatgtgaagaatccctgagactgtcagaatcttcaatga
agttcagtcaataatgctatcttaggtcatgttgtgttacatgttctgag
gtatgttatggtgaggtatatatagtggcatcagataccactgcatgtcc
atgatacttcaggcctctagcagaaaatatgtcagtgatccctgatgact
cttctgcccaaaatatgactttcattaactgccaatggaattactactga
tgactgttatctattcttctgtctaaaatctcagaagtgtcttgccattc
ataagcaatttgatgtaacgatgcacgtggcaactggaaaagagatttgt
ttacatgaaaccctctgaaagtatttttatgtcccttgtacttactggca
atggacactatgttatatcagagatccctgctgccatagacaaacagatt
aggcgtgttttctactcccattttggacaatattgatgacatctgtgatc
ctgactaccaaggaaaatatattgacattactgattcatgctgccactgg
taactattttgacacccatagtctgtgtggtcattgaaaagctacatgat
gtctatgataaatcaaccataagaatctgttgtaaagtctatggtaagtg
ttgctgcctaagttcataatgagttaagtgttgttcgctgttactggaga
ctagtttgatgcctgtaatcctaactgaaacctgaaaataccttgatgtg
agtgctgcatgctgtgaccagcaataatgatggaatccatttttttttct
attgctgatgaaaaacccagtgatggccatgatctctcctattgtttgag
acctgctgacttacaaggttcatgttgatggtagagatcatgttgaggta
gtgttctgaggtgaccacagtagatcagattgatgtctgagatctattct
tccataaggaaatttctgttgatgtcttgcaagctatccaccatgtaaat
ttacatggctgttacttgccttgaattggccagcagaatatatggccacc
tgatagaaggtttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27876729_27877897
seq2: B6Ng01-308K17.g_65_1230 (reverse)

seq1  CATAAACCTCTTATCAGGTGGCAATATTTATCTTGACAGCGCAATTCCAG  50
      |||||||||  ||||||||||| |||| | |||   | |  ||||| || 
seq2  CATAAACCTTCTATCAGGTGGCCATATAT-TCT--GCTGGCCAATT-CAA  46

seq1  GGGCAGTAACAACCATGTACA-TTACATGGTTGATAGCTGGCAGGAACAT  99
      ||  ||||||| ||||||| | ||||||||| ||||||| ||| | ||||
seq2  GGCAAGTAACAGCCATGTAAATTTACATGGTGGATAGCTTGCAAG-ACAT  95

seq1  CAACAGAA--TTTCTTATGGAAG-ATAGAATCTCAGACATCAATCTGATC  146
      ||||||||  || |||||||||| |||| |||||||||||||||||||||
seq2  CAACAGAAATTTCCTTATGGAAGAATAG-ATCTCAGACATCAATCTGATC  144

seq1  TACTGT-GTCACCTCAGAACACTTACCTCAACATGATCTCTACCATCAAC  195
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TACTGTGGTCACCTCAGAACAC-TACCTCAACATGATCTCTACCATCAAC  193

seq1  ATGAACCTTTTAAGTCAGCAGGTTCTCAAACAATAGGAGAGATCATGGCC  245
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  ATGAACCTTGTAAGTCAGCAGG-TCTCAAACAATAGGAGAGATCATGGCC  242

seq1  ATCACTGGGTTTTTCATCAGCAATAGAAAAAAAAATGGATTCCATCATTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGGTTTTTCATCAGCAATAGAAAAAAAAATGGATTCCATCATTA  292

seq1  TTGCTGGTCACAGCATGCAGCACTCACATCAAGGTATTTTCAGGTTTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTCACAGCATGCAGCACTCACATCAAGGTATTTTCAGGTTTCAG  342

seq1  TTAGGATTACAGGCATCAAACTAGTCTCCAGTAACAGCGAACAACACTTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATTACAGGCATCAAACTAGTCTCCAGTAACAGCGAACAACACTTA  392

seq1  ACTCATTATGAACTTAGGCAGCAACACTTACCATAGACTTTACAACAGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTATGAACTTAGGCAGCAACACTTACCATAGACTTTACAACAGAT  442

seq1  TCTTATGGTTGATTTATCATAGACATCATGTAGCTTTTCAATGACCACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGTTGATTTATCATAGACATCATGTAGCTTTTCAATGACCACAC  492

seq1  AGACTATGGGTGTCAAAATAGTTACCAGTGGCAGCATGAATCAGTAATGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGGGTGTCAAAATAGTTACCAGTGGCAGCATGAATCAGTAATGT  542

seq1  CAATATATTTTCCTTGGTAGTCAGGATCACAGATGTCATCAATATTGTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTTTCCTTGGTAGTCAGGATCACAGATGTCATCAATATTGTCC  592

seq1  AAAATGGGAGTAGAAAACACGCCTAATCTGTTTGTATATGGCAGCAGGGA  645
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAATGGGAGTAGAAAACACGCCTAATCTGTTTGTCTATGGCAGCAGGGA  642

seq1  TCTCTGATATAACATAGTGTCCATTGCCAGTAAGTACAAGGGACATAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATATAACATAGTGTCCATTGCCAGTAAGTACAAGGGACATAAAA  692

seq1  ATACTTTCAGAGGGTTTCATGTAAACAAATCTCTTTTCCAGTTGCCACGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAGAGGGTTTCATGTAAACAAATCTCTTTTCCAGTTGCCACGT  742

seq1  GCATCGTTACATCAAATTGCTTATGAATGGCAAGACACTTCTGAGATTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGTTACATCAAATTGCTTATGAATGGCAAGACACTTCTGAGATTTT  792

seq1  AGACAGAAGAATAGATAACAGTCATCAGTAGTAATTCCATTGGCAGTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAGAATAGATAACAGTCATCAGTAGTAATTCCATTGGCAGTTAA  842

seq1  TGAAAGTCATATTTTGGGCAGAAGAGTCATCAGGGATCACTGACATATTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCATATTTTGGGCAGAAGAGTCATCAGGGATCACTGACATATTT  892

seq1  TCTGCTAGAGGCCTGAAGTATCATGGACATACAGTGGTATCTGATGCCAC  945
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGCTAGAGGCCTGAAGTATCATGGACATGCAGTGGTATCTGATGCCAC  942

seq1  TATATATACCTCACCATAACATACCTCAGAACATGTAACACAACATGACC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACCTCACCATAACATACCTCAGAACATGTAACACAACATGACC  992

seq1  TAAGATAGCATTATTGACTGAACTTCATTGAAGATTCTGACAGTCTCAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGCATTATTGACTGAACTTCATTGAAGATTCTGACAGTCTCAGG  1042

seq1  GATTCTTCACATTTACAGTCCCTTCAGGAGCAACACAGGCAATGGATTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCACATTTACAGTCCCTTCAGGAGCAACACAGGCAATGGATTTC  1092

seq1  AATATGGCTACTAGAGGCAGGATGCATGATTCACATCATCCACATTTCTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTACTAGAGGCAGGATGCATGATTCACATCATCCACATTTCTG  1142

seq1  TGGCACCTGTGCATTAGTGAATTC  1169
      ||||||||||||||||||||||||
seq2  TGGCACCTGTGCATTAGTGAATTC  1166