MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-309G03
Chromosome	X (Build37)
Map Location	96,357,522 - 96,477,305
singlet/doublet	doublet
Overlap gene	none
Upstream gene	Ar, LOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1
Downstream gene	Pja1, LOC100042947, Pcna-ps1, EG620592, Eda
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ar (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11835 MGI:88064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042324 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042324
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Ophn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94190 MGI:2151070
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Yipf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77929 MGI:1925179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042932 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042932
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs, 4 Proteins pseudo : _no_value

name	Stard8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236920 MGI:2448556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC436219 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:436219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins pseudo : _no_value

name	Efnb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13641 MGI:102708
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pja1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18744 MGI:1101765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042947 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Pcna-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18539 MGI:97504
definition	note : proliferating cell nuclear antigen pseudogene 1 pseudo : _no_value

name	EG620592 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620592 MGI:3648377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eda (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13607 MGI:1195272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ar (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129906 GeneID:11835 MGI:88064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : androgen receptor transcript_id : NM_013476.3

name	Ophn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345123 GeneID:94190 MGI:2151070
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oligophrenin 1 transcript_id : NM_052976.3

name	Yipf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253919 GeneID:77929 MGI:1925179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Yip1 domain family, member 6 transcript_id : NM_207633.2

name	Stard8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39841034 GeneID:236920 MGI:2448556
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : START domain containing 8 transcript_id : NM_199018.1

name	Efnb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802568 GeneID:13641 MGI:102708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ephrin B1 transcript_id : NM_010110.3

name	Pja1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133505553 GeneID:18744 MGI:1101765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : praja1, RING-H2 motif containing transcript_id : NM_008853.3

name	Pja1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133506755 GeneID:18744 MGI:1101765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : praja1, RING-H2 motif containing transcript_id : NM_001083110.1

name	LOC100042947 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271833 GeneID:100042947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to ribosomal protein L37 transcript_id : XM_001478804.1

name	EG620592 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486868 GeneID:620592 MGI:3648377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG620592 transcript_id : NM_001081283.1

name	Eda (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893370 GeneID:13607 MGI:1195272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectodysplasin-A transcript_id : NM_010099.2

name	Ar (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304901 CCDS:CCDS30294.1 GeneID:11835 MGI:88064
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IPI] [Evidence IDA] GO_function : GO:0004882 - androgen receptor activity [Evidence ISS] [Evidence IDA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030521 - androgen receptor signaling pathway [Evidence IDA]; GO:0016049 - cell growth [Evidence ISS]; GO:0050875 - cellular physiological process [Evidence IDA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0008584 - male gonad development [Evidence IMP]; GO:0019102 - male somatic sex determination [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : testicular feminization product : androgen receptor protein_id : NP_038504.1

name	Ophn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16418475 CCDS:CCDS30295.1 GeneID:94190 MGI:2151070
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IDA]; GO:0005096 - GTPase activator activity [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : oligophrenin 1 protein_id : NP_443208.1

name	Yipf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46519049 CCDS:CCDS30296.1 GeneID:77929 MGI:1925179
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : Yip1 domain family, member 6 protein_id : NP_997516.1

name	Stard8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841035 CCDS:CCDS30297.1 GeneID:236920 MGI:2448556
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : START domain containing 8 protein_id : NP_950183.1

name	Efnb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753726 CCDS:CCDS30298.1 GeneID:13641 MGI:102708
definition	GO_component : GO:0045121 - lipid raft [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0046875 - ephrin receptor binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0009880 - embryonic pattern specification [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA] codon_start : 1 note : Cek ligand; Cek5 ligand product : ephrin B1 protein_id : NP_034240.1

name	Pja1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50284539 GeneID:18744 MGI:1101765
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030163 - protein catabolism [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; E3 ubiquitin-protein ligase product : praja1 isoform 2 protein_id : NP_032879.2

name	Pja1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133506756 GeneID:18744 MGI:1101765
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030163 - protein catabolism [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; E3 ubiquitin-protein ligase product : praja1 isoform 1 protein_id : NP_001076579.1

name	LOC100042947 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271834 GeneID:100042947
definition	codon_start : 1 product : similar to ribosomal protein L37 protein_id : XP_001478854.1

name	EG620592 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486869 GeneID:620592 MGI:3648377
definition	codon_start : 1 note : likely orthologue of H. sapiens transmembrane protein 28 (TMEM28) product : predicted gene, EG620592 protein_id : NP_001074752.1

name	Eda (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753712 CCDS:CCDS30299.1 GeneID:13607 MGI:1195272
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007160 - cell-matrix adhesion [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0043473 - pigmentation [Evidence IMP]; GO:0042346 - positive regulation of NF-kappaB import into nucleus [Evidence IDA]; GO:0007431 - salivary gland development [Evidence IDA] codon_start : 1 product : ectodysplasin-A protein_id : NP_034229.1

name	LOC100042324 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042324
definition	number : 2 pseudo : _no_value

name	LOC100042324 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042324
definition	number : 1 pseudo : _no_value

name	LOC100042932 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271832 GeneID:100042932
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs, 4 Proteins product : similar to protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudo : _no_value transcript_id : XR_033864.1

name	LOC436219 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271797 GeneID:436219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_033477.1

clone name	MSMg01-410N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279A08
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-309G03.b	B6Ng01-309G03.g
ACC	GA101638	GA101639
length	520	1,105
definition	B6Ng01-309G03.b	B6Ng01-309G03.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(96,357,522 - 96,358,052)	(96,476,192 - 96,477,305)
sequence	tagtccaaggcaaaaggagctggtatcctaacacacacaatattgccata agaaaacactttctttggtaaggtatttgctaatgtagatgatagtgcct atgcactgaagcctttataaacgtctagtcctttattcatggctctgtca tgaaactacactatggtcgggcatcagagacataaagatcactaagacat gatgggtctgggtctccaccttcaagggccccctgactctctgaagaagc taccccgaaccaagatactcagtcaccctgacccacaacttctttaggga gtctgggacgtactgaggcattcagaggtcaggatggatcaaagagagac aaggagccatcatctctccagaaaagtcttccaagtggggagttgaggag agaggatgagctgattatggggttgtgaggttttttggggggtgatagaa aaaacaaacatagctgcaacagcataggcaggtgcacgagataagcttac cagagggcggggagttagtg	gaattcctgttctccttgctcttacaagaaaactgaatcccagagagggg cagagggttgttcaagatctcaattacaaataggcatgtgttcttggatg catgcagaggtgcctgcacccatgcactcatgcatgggaccatgtagtgt gcaggtacaggtgtgtgaatgcacacaggcatgcagatatgtgcagacgt gtgtgagtatatgtatgagtgctttgtacaaatgtgtgcttgcatcctgt gggtctactagaaacttagctgggcagttggactgccaactagaccttgg tgggtggctgagtgttcaggaagagtgaaattccatctgagctcacagat gaagacaggagcacagaggaggcacaggcaatggcaaccaactcagcatg ctccctgcacctgaatttggggtgcatttgggctcatgggttcatcagtg taataacagttccagctgctgagttattgtgtcaggtgctgtgttcagtc tgccgcatacattctatcagcccatgcctagaatccgatgaggtggcaat gatctccattagcagtctaagagacaaagggcaaataacaaccccaaggt cacacagctgataatctgtggggtcagtcgtggacacttgtttttaaacc ttgtgcatactccggcacagcaccacgtaaatgagcacatcaccagacag gtatagagcagcccagggagttaatattccacggtaacctctggtgcatg gctcagggtccttgaacccagaaggatgggcaacccagtgtctactcctt ccatctgggcttgagtcctgattctgttgttcctgagactggctgtctca ggacttgatcaaatttcccggcctctggcctctaagctccaggctttagg cagctagtgaaaatttatggcttgagaaagttcttgcaagtccagtcccc agattcccctctccaacctttgcatggtttatcagatctcctctcctctc tctgcgctgcagctctcttctcaacctccctgaccctttgtctctggcac agctagcccttcctcaacccctccagcttgacctgacaacatacagcaca acctc
quality values	Open. Hide. 58 45 54 58 58 34 23 41 52 62 38 52 62 56 56 56 62 62 56 62 62 62 62 62 47 47 56 56 56 46 38 44 56 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 49 62 62 59 62 62 62 62 62 62 62 62 54 62 59 59 59 62 59 59 59 62 62 62 62 59 62 62 62 62 62 62 59 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 59 62 62 62 42 42 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 54 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 59 62 62 62 62 59 59 59 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 54 54 62 62 62 62 62 54 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 59 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 56 59 46 31 48 59 28 13 13 11 13 12 8 13 12 18 16 8 11 13 10 11 11 13 11 13 18 11 11 14 10 13 8 11 18 23 20 11 30 30 30 16 11 24 13 12 17 25 11 12 13 23 13 11 13 13 13 13 23 9 17 8 13 13 23 16 10 11 18 13 6 20 18 17 9 34 23 10 8 12 14 13 6 12 17 17 10 32 23 11	Open. Hide. 62 47 43 59 62 62 62 62 62 62 59 59 59 56 56 56 62 62 62 62 62 62 62 62 59 51 62 62 59 62 62 62 59 62 62 59 62 62 62 62 62 59 62 59 59 59 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 49 42 62 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 42 62 62 62 62 62 62 62 59 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 48 62 62 58 42 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 52 58 58 41 58 52 58 58 52 58 58 58 58 58 58 58 58 58 46 51 53 58 58 53 58 58 52 58 58 53 58 58 52 58 46 54 53 52 58 58 50 58 54 50 58 49 58 50 52 51 53 52 51 58 58 58 49 31 39 33 58 49 54 50 51 50 49 51 51 58 51 49 46 37 49 58 48 51 58 58 52 58 49 58 58 36 52 58 52 53 58 51 37 58 50 58 34 53 46 58 50 58 58 58 58 58 50 45 58 51 49 58 49 47 58 51 58 50 49 49 50 41 51 54 37 29 54 40 42 52 45 39 54 49 47 54 44 49 38 29 51 54 50 50 54 54 24 44 35 49 37 54 49 45 53 54 30 37 51 42 39 54 54 37 45 53 53 53 54 40 52 40 32 53 53 44 31 25 51 49 31 26 45 35 34 53 45 52 37 42 35 32 39 37 33 49 24 42 40 34 52 52 45 32 31 38 32 36 29 31 40 45 47 27 47 31 31 5 49 49 20 24 45 53 45 32 45 53 31 52 33 25 30 46 37 23 35 28 25 30 46 40 31 31 19 20 47 32 31 31 31 51 31 45 25 28 43 42 31 30 30 31 24 33 29 39 31 28 40 33 25 18 29 41 31 31 31 31 31 38 32 42 35 42 31 38 31 42 26 31 31 28 31 31 30 30 30 43 20 30 23 26 31 44 27 31 31 37 31 31 32 17 19 10 32 12 28 27 27 12 25 32 34 48 33 33 48 33 6 46 8 24 24 25 25 32 31 34 32 19 14 16 31 33 26 23 30 24 31 37 19 30 18 11 25 29 33 48 37 27 25 24 25 38 31 36 34 31 24 25 33 31 47 47 31 22 48 33 18 20 21 31 18 24 22 21 27 20 33 48 34 22 15 19 30 13 21 32 31 19 18 34 34 17 20 23 27 34 29 43 37 27 24 22 28 11 28 29 39 34 30 19 15 14 7 9 19 14 10 24 9 28 7 15 24 24 24 18 21 7 34 24 6 7 10 20 4 18 24 14 14 17 14 11 5 5 7 11 8 14 5 10 3 8 16 27 5 4 6 16 28 28 24 6 14 3 12 22 21 18 16 26 11 7 7 6 17 17 5 3 17 22 9 6 1 2 27 3 3 12 8 7 6 8 8 7 14 14 16 10 5 6 18 20 13 25 16 7 7 28 10 11 7 9 13 5 10 13 5 24 28 28 8 22 12 17 3 9 4 6 13 6 14 5 7 11 3 2 4 4 4 18 6 11 6 5 11 11 6 12 9 4 9 2 7 14 5

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_96357522_96358052
seq2: B6Ng01-309G03.b_47_572

seq1  GAATTCTAGTCCAAGGCAAAAGGAGCTGGTATCCTAACACACACAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCCAAGGCAAAAGGAGCTGGTATCCTAACACACACAATATT  50

seq1  GCCATAAGAAAACACTTTCTTTGGTAAGGTATTTGCTAATGTAGATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAGAAAACACTTTCTTTGGTAAGGTATTTGCTAATGTAGATGATA  100

seq1  GTGCCTATGCACTGAAGCCTTTATAAACGTCTAGTCCTTTATTCATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTATGCACTGAAGCCTTTATAAACGTCTAGTCCTTTATTCATGGCT  150

seq1  CTGTCATGAAACTACACTATGGTCGGGCATCAGAGACATAAAGATCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGAAACTACACTATGGTCGGGCATCAGAGACATAAAGATCACTA  200

seq1  AGACATGATGGGTCTGGGTCTCCACCTTCAAGGGCCCCCTGACTCTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGATGGGTCTGGGTCTCCACCTTCAAGGGCCCCCTGACTCTCTGA  250

seq1  AGAAGCTACCCCGAACCAAGATACTCAGTCACCCTGACCCACAACTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTACCCCGAACCAAGATACTCAGTCACCCTGACCCACAACTTCTT  300

seq1  TAGGGAGTCTGGGACGTACTGAGGCATTCAGAGGTCAGGATGGATCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTCTGGGACGTACTGAGGCATTCAGAGGTCAGGATGGATCAAAG  350

seq1  AGAGACAAGGAGCCATCATCTCTCCAGAAAAGTCTTCCAAGTGGGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGGAGCCATCATCTCTCCAGAAAAGTCTTCCAAGTGGGGAGTT  400

seq1  GAGGAGAGAGGATGAGCTGATTATGGGGTTGTGAGGTTTTTTGGGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAGGATGAGCTGATTATGGGGTTGTGAGGTTTTTTGGGGGGTG  450

seq1  CTAGAACAAAACAAGCTTAGCTGCAACAGCAAAGGCAGGAGCACGAGAGA  500
       ||||| ||||||| | |||||||||||||| ||||||| |||||||| |
seq2  ATAGAA-AAAACAAACATAGCTGCAACAGCATAGGCAGGTGCACGAGATA  499

seq1  AGCTTCCTAGAGGGCAGGGCGTTTGTTAGTG  531
      ||||| | ||||||| |||     |||||||
seq2  AGCTTACCAGAGGGCGGGG----AGTTAGTG  526

seq1: chrX_96476192_96477305
seq2: B6Ng01-309G03.g_65_1169 (reverse)

seq1  GAGGTTGTGCTGTATGGTGGGCAAGGTCAGCCGGGAGGGGTGAGGGAAGG  50
      |||||||||||||||| |  |  ||||||  | ||||||||   ||||||
seq2  GAGGTTGTGCTGTATGTT--GTCAGGTCAAGCTGGAGGGGTTGAGGAAGG  48

seq1  GCTAGCTGTGGCCAGAGACAAAGGGCCAGGGGAGGGTGAGAAGAGAGGCT  100
      ||||||||| ||||||||||||||| || |||||| |||||||||| |||
seq2  GCTAGCTGT-GCCAGAGACAAAGGGTCA-GGGAGGTTGAGAAGAGA-GCT  95

seq1  GCAGCCGCCAGAGGAGGAGGAGGAGGAGATCTTGATAAACCATGC-AAGG  149
      |||||   |||||   ||||| ||||||||| ||||||||||||| ||||
seq2  GCAGC--GCAGAG--AGAGGA-GAGGAGATC-TGATAAACCATGCAAAGG  139

seq1  TTGGAGAGGGGAATCTGGGGACTGGACTTGCAAGAACTTTCTCAAGCCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGGGGAATCTGGGGACTGGACTTGCAAGAACTTTCTCAAGCCAT  189

seq1  AAATTTTCACTAGCTGCCTAAAGCCTGGAGCTTAGAGGCCAGAGGCC-GG  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAATTTTCACTAGCTGCCTAAAGCCTGGAGCTTAGAGGCCAGAGGCCGGG  239

seq1  AAATTTGATCAAGTCCTGAGACAGCCAGTCTCAGGAACAACAGAATCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATCAAGTCCTGAGACAGCCAGTCTCAGGAACAACAGAATCAGG  289

seq1  ACTCAAGCCCAGATGGAAGGAGTAGACACTGGGTTGCCCATCCTTCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCCCAGATGGAAGGAGTAGACACTGGGTTGCCCATCCTTCTGGG  339

seq1  TTCAAGGACCCTGAGCCATGCACCAGAGGTTACCGTGGAATATTAACTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGACCCTGAGCCATGCACCAGAGGTTACCGTGGAATATTAACTCC  389

seq1  CTGGGCTGCTCTATACCTGTCTGGTGATGTGCTCATTTACGTGGTGCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGCTCTATACCTGTCTGGTGATGTGCTCATTTACGTGGTGCTGT  439

seq1  GCCGGAGTATGCACAAGGTTTAAAAACAAGTGTCCACGACTGACCCCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAGTATGCACAAGGTTTAAAAACAAGTGTCCACGACTGACCCCACA  489

seq1  GATTATCAGCTGTGTGACCTTGGGGTTGTTATTTGCCCTTTGTCTCTTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCAGCTGTGTGACCTTGGGGTTGTTATTTGCCCTTTGTCTCTTAG  539

seq1  ACTGCTAATGGAGATCATTGCCACCTCATCGGATTCTAGGCATGGGCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAATGGAGATCATTGCCACCTCATCGGATTCTAGGCATGGGCTGA  589

seq1  TAGAATGTATGCGGCAGACTGAACACAGCACCTGACACAATAACTCAGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTATGCGGCAGACTGAACACAGCACCTGACACAATAACTCAGCA  639

seq1  GCTGGAACTGTTATTACACTGATGAACCCATGAGCCCAAATGCACCCCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACTGTTATTACACTGATGAACCCATGAGCCCAAATGCACCCCAA  689

seq1  ATTCAGGTGCAGGGAGCATGCTGAGTTGGTTGCCATTGCCTGTGCCTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGCAGGGAGCATGCTGAGTTGGTTGCCATTGCCTGTGCCTCCT  739

seq1  CTGTGCTCCTGTCTTCATCTGTGAGCTCAGATGGAATTTCACTCTTCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCCTGTCTTCATCTGTGAGCTCAGATGGAATTTCACTCTTCCTG  789

seq1  AACACTCAGCCACCCACCAAGGTCTAGTTGGCAGTCCAACTGCCCAGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAGCCACCCACCAAGGTCTAGTTGGCAGTCCAACTGCCCAGCTA  839

seq1  AGTTTCTAGTAGACCCACAGGATGCAAGCACACATTTGTACAAAGCACTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGTAGACCCACAGGATGCAAGCACACATTTGTACAAAGCACTC  889

seq1  ATACATATACTCACACACGTCTGCACATATCTGCATGCCTGTGTGCATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACTCACACACGTCTGCACATATCTGCATGCCTGTGTGCATTC  939

seq1  ACACACCTGTACCTGCACACTACATGGTCCCATGCATGAGTGCATGGGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTGTACCTGCACACTACATGGTCCCATGCATGAGTGCATGGGTG  989

seq1  CAGGCACCTCTGCATGCATCCAAGAACACATGCCTATTTGTAATTGAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCTCTGCATGCATCCAAGAACACATGCCTATTTGTAATTGAGAT  1039

seq1  CTTGAACAACCCTCTGCCCCTCTCTGGGATTCAGTTTTCTTGTAAGAGCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAACCCTCTGCCCCTCTCTGGGATTCAGTTTTCTTGTAAGAGCA  1089

seq1  AGGAGAACAGGAATTC  1114
      ||||||||||||||||
seq2  AGGAGAACAGGAATTC  1105

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information