BAC Information

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BAC

Clone NameB6Ng01-310I23
ChromosomeX (Build37)13 (Build37)
Map Location 154,526,056 - 154,526,754114,413,776 - 114,414,291
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePhex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2
Downstream geneEG667483, LOC671033, LOC667487, LOC436243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310I23.bB6Ng01-310I23.g
ACCGA102503GA102504
length1,160501
definitionB6Ng01-310I23.b B6Ng01-310I23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(154,526,056 - 154,526,754)(114,413,776 - 114,414,291)
sequence
gaattctctgtttagctctgcacctgatttataaattgggttatttggat
tatcagtgtttagcttcttgagttctttctatattttagatactagccct
atgtcagaagtagggttagtgaagctctttacccaatctgtaggctgtca
ttttgtcctggtgtcctttgccttacagaagcttttgagtttcatgaggt
cccatttatcaatttttgatcttagaggctgagtcataagtggtctgttc
aggaaattgtctcctttactgactagttaaaggttattccctactttctg
ttctattagattaattgtgtatgattttatgttgtccttgattcatttgg
actgtgttttgtgcagggtgataaatatgaatctatttgcactcttctac
atgcagatgtcagttagaccagcaccatttgttgaagattctctcccctt
tccccctgtatgtttttggtttctttatcaaaaatcaagtgtctgtaggt
atgtgggtttattttggggtctttaattaaatttcattgatccacctgcc
tgtttttatacaaataccatggagtttttatcactattactatgtattat
aacttgaggtcaggggtagtgatacttccagaagttattttattgtttag
gatctttttagctatcctatgttcttttgtttttccttatgaagttgaga
gtttttcaaggtctttaaaaaattgagttgttttttactgtttagtttat
tccaattagcatgaggtcctctagttccatcaatagtcttgaaaatgaca
tttttctttgtgactgagtaataattgattgtataaatgtatggtgtttt
ctttatctgttcatctgttaatgaacacttagtctggttctgtaaattag
ctactgtgtatacaatatcaataaacagctatgcaggcatcacttttttc
tacatgtatagggataaaaactaggtaaaatgttttactttttacatatt
tttttcttccaaactgggttagaaagcttggtaataactggtatcctctt
cattttaataacactgctatggagctagggggatcctctgtacacgacaa
ccattggctgagtacattgtttaccaaccggaatgcaaaggccagaacaa
ggttagtcaa

ctgatctttccaaaactttttatcatgaatgggtgttggattttgtaaaa
tgctttgtcatgtggtttttgtctttgagtttgtttatatactggattac
gttgatggttttccgtatattgaaccatccctgcatccctgggatgaaac
ctacttggtcaggatggatgattgttttgatgtgttcttggattctgtta
gtgagaattttattgagtatttttgcatcaatattcataagggaaattgg
tctgaatttctctatctttattgggtctttctgtggtttatgtatcagag
taattgtggcttcttagaattaattggttagagtaccttctgtttttctt
ttgtggaatagtttgagaactaaaattagatcttctttgaagatatgata
gaactctgccctaaacacttctggtcctggggtttttgttgttgttgttg
ttgttgtttgtttttttgttttgttttttgtttattttttgttttgtttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_154526056_154526754
seq2: B6Ng01-310I23.b_506_1205

seq1  TGTTTTTGGTTTCTTTATCAAAAATCAAGTGTCTGTAGGTATGTGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGGTTTCTTTATCAAAAATCAAGTGTCTGTAGGTATGTGGGTTT  50

seq1  ATTTTGGGGTCTTTAATTAAATTTCATTGATCCACCTGCCTGTTTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGGTCTTTAATTAAATTTCATTGATCCACCTGCCTGTTTTTATA  100

seq1  CAAATACCATGGAGTTTTTATCACTATTACTATGTATTATAACTTGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCATGGAGTTTTTATCACTATTACTATGTATTATAACTTGAGGT  150

seq1  CAGGGGTAGTGATACTTCCAGAAGTTATTTTATTGTTTAGGATCTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAGTGATACTTCCAGAAGTTATTTTATTGTTTAGGATCTTTTTA  200

seq1  GCTATCCTATGTTCTTTTGTTTTTCCTTATGAAGTTGAGAGTTTTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTATGTTCTTTTGTTTTTCCTTATGAAGTTGAGAGTTTTTCAAG  250

seq1  GTCTTTAAAAAATTGAGTTGTTTTTTACTGTTTAGTTTATTCCAATTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAAAATTGAGTTGTTTTTTACTGTTTAGTTTATTCCAATTAGC  300

seq1  ATGAGGTCCTCTAGTTCCATCAATAGTCTTGAAAATGACATTTTTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTCCTCTAGTTCCATCAATAGTCTTGAAAATGACATTTTTCTTTG  350

seq1  TGACTGAGTAATAATTGATTGTATAAATGTATGGTGTTTTCTTTATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGTAATAATTGATTGTATAAATGTATGGTGTTTTCTTTATCTGT  400

seq1  TCATCTGTTAATGAACACTTAGTCTGGTTCTGTAAATTAGCTACTGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTAATGAACACTTAGTCTGGTTCTGTAAATTAGCTACTGTGTA  450

seq1  TACAATATCAATAAACAGCTATGCAGGCATCAC-TTTTTCTACATGTTAA  499
      ||||||||||||||||||||||||||||||||| |||||||||||||  |
seq2  TACAATATCAATAAACAGCTATGCAGGCATCACTTTTTTCTACATGT--A  498

seq1  TAGGGATAAAAACTAGGTAAAAATGTTTACCTTTTACATATTTTTT--CT  547
      ||||||||||||||||||||||   ||||| |||||||||||||||   |
seq2  TAGGGATAAAAACTAGGTAAAATGTTTTACTTTTTACATATTTTTTTCTT  548

seq1  ACAAACTTGGTTTAGAAGCTTGGTTAAATAACTGCTAT-CTCTTCATTTA  596
       |||||| ||||   |||||||||  |||||||| ||| |||||||||| 
seq2  CCAAACTGGGTTAGAAAGCTTGGT--AATAACTGGTATCCTCTTCATTT-  595

seq1  TATTAGCACTGCTATGAAGCTTAGGTGATCCTCTGTACAGAACAA-CATT  645
      || || |||||||||| ||||  || |||||||||||||  |||| ||||
seq2  TAATAACACTGCTATGGAGCTAGGGGGATCCTCTGTACACGACAACCATT  645

seq1  TGCTGAGTACATTGTTTACCAACTGGGAATGCAAAGAC--AAACAAGGTA  693
       ||||||||||||||||||||||  ||||||||||| |   |||||||| 
seq2  GGCTGAGTACATTGTTTACCAAC-CGGAATGCAAAGGCCAGAACAAGGTT  694

seq1  AGTCAA  699
      ||||||
seq2  AGTCAA  700


seq1: chr13_114413776_114414291
seq2: B6Ng01-310I23.g_189_548 (reverse)

seq1  AAAACAAAACAAAAAAACTACACCAGAGTCAGGTATGATAGTACCCGCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAACTCTAGCACTCAGGAGGCAGAAGCACTCAGATTTCTGTGAATTCCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGCAGGGCTGGTCTACATAGTGAGTTCCAGGACAACTAGGGTCACATAAA  150
                                     | ||| |     ||| |||
seq2  -------------------------------AAAACAA----AACAAAAA  15

seq1  GAGACCCTGTCTCAAACAACAATAACAAAAATAAGAATTAACCACAGGGG  200
       |          |||||||||| ||||| || || ||  |||| ||||  
seq2  AA----------CAAACAACAACAACAACAACAACAA-AAACCCCAGGAC  54

seq1  CTGGAGAGATGCCTTAGGGTTAATAGCACTGGC-TACCCTTCTAGAGGAC  249
      | | || |     ||||||   | ||  ||  | || | |   ||| || 
seq2  CAGAAGTG----TTTAGGG--CAGAGTTCTATCATATCTTCAAAGAAGAT  98

seq1  CTGGCT---GATTCCCAGCACTCCC---ATGGCAGCCCACAACTGTCTGT  293
      ||   |   | |  | | |  | ||   |  | |   || ||    || |
seq2  CTAATTTTAGTTCTCAAACTATTCCACAAAAGAAAAACAGAAGGTACTCT  148

seq1  AAC--TTCAATTCTACGCAATCTGATATGCTCTGGCTTCTCTGGACACCA  341
      |||   | ||||||| | |  |  |  | |||||          |||  |
seq2  AACCAATTAATTCTAAGAAGCCACAATTACTCTG--------ATACATAA  190

seq1  GGCATACAAGTGATGCCCAGGCATTTTG-TAGGGAAA---ATACCTATAC  387
        || | ||   |  ||||   ||   | ||| ||||   | ||| ||  
seq2  ACCACAGAA---AGACCCA---ATAAAGATAGAGAAATTCAGACCAATTT  234

seq1  ACATAA--AATAAAACTAAAAAAAAAAAAAAGACTTTTAAAATCTC-CTA  434
       | | |  ||||    |  ||||| |   ||     | ||| |||| |||
seq2  CCCTTATGAATATTGATGCAAAAATACTCAA-----TAAAATTCTCACTA  279

seq1  CCTTAAATACAAGAACACATTAAAACAATCATCCATCTTGACCAAGTAGG  484
       |   ||| ||||||||||| |||||||||||||||| ||||||||||||
seq2  AC-AGAATCCAAGAACACATCAAAACAATCATCCATCCTGACCAAGTAGG  328

seq1  TTTTATTCCAGGGATGCAGGGATGGTTTAATA  516
      ||| || |||||||||||||||||||| ||||
seq2  TTTCATCCCAGGGATGCAGGGATGGTTCAATA  360


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