BAC Information

Click to search

BAC

Clone NameB6Ng01-315M03
ChromosomeX (Build37)
Map Location 128,991,991 - 129,019,325
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC245600, EG631264
Downstream geneLOC665846, LOC665850, LOC665854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315M03.bB6Ng01-315M03.g
ACCGA106321GA106322
length1,1251,116
definitionB6Ng01-315M03.b B6Ng01-315M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,991,991 - 128,993,122)(129,018,207 - 129,019,325)
sequence
gaattcattagagcagatctgaaggtttcattattctttaagagtacatt
aataaaaccaccacacgcttatttttaatactgtgtatatgaattattct
gacagatagttgcaaagccaacatatcaatcctgaaattaaaaatgtagt
aggacaaattagtgtgttccagctaccgcaagccaagctgaacgataaac
tttcttctttgaactctggatctagctgtcctgcggaggaaaaatgactg
tgaccaagaaagtggtaagaagctaaagcctaattgacatttaaatgaaa
acaatgcaattctatatagcaaatgctgttctctcgagccctgagtttta
tagcttattgttctttacccggggagtctcaaagaaggaagactgtagcc
atttcatttgtttcacatgtccttttatgagcctctcaacacaattctta
cagtgaagacaatatacaacagataataacaactgcttttcgcaatctag
cttccctctgtgagtgtgtaacaagccatattaaaaatatttggaatcaa
agtgtgttgctaacttactgctccatgaagtaacgcaccgcactaggttg
catcagttctctaggcctaatctagctttcccctagtggtttcagaggcc
caggggagagacactgtatcagttccatttatgagttgaaagataaatgg
ttttgcccttaataaatgtagaggactagatgaagagctcaggacaactg
ctttttactcccttaagcagcaagacctttttaatcctcctcattccctc
ctccactaattttgcatgaactatgctgttagtcacataagatgatgaat
gcttgaactagtccagtaaaggttgagctaatgagaatgttgtcattaaa
acgtgcactatagctaagaggcagaaccaaacttctgaggacacttagct
ttagttttccccagtgctgctgatatagcattacatatttggtcttttaa
gcaagggacttcctagtcatggtgagacactttcttcttctgacatgatc
atgattttcactgctcagccagtttcagcttatatctatgtgttttcgag
cctcgagcgttcctgtatacctgct

gaattctttgggaagtttatcgctattcaaagtagggatggagaaataac
aatattttaggtagatatagaaatttattttaaaggatagaaaaccatca
atagtgctccaaaatattaagaactgggacttcaatttaaattatgtata
aaactagaagacagacagaaaacttgatagaaccaggatttaagaagata
acagctaaaaacttacagaatcaatttaaaaatatcataaaggttaataa
tcccaatatatcacttttccatagtttctgcctccttcttcctcctcctt
ttaaatctctgtctctgtctttctctctcatacacacacacacacacaca
cacacacacacacacacacacacacacacacttacacttctcattcacat
gtaaaatttccatccattaaatactacaacaaaaaatataatcaactagt
aatttgcattaggaaagtggctgaatgctgttggttgggcttaatggatt
ttcctagtaggaaccaggaaagtagtagtactgagagcaatgtggactat
gcaactgcagctcaaatacatatgagaatatcttagaagtatctttattt
gagatgtcatttttgtctgaaaatgattaatagatttacagcattataga
gaatttttcattttatattcaaattttaacaatacaaatacactaagaat
actcatattactaacaagctgttgagttagccaccataccacactattat
aatccaagcactcatgaaggtgaggagaaagaatcataagttcaaggtca
aaatcaaataatatacttttcaagttccttgccaggcttggagatagtaa
gaactagttttagacaaaaatatgctatattagcaaatctatttttaaat
aaatagatttttaaataaatgcaaaggtaagtaaatgagagaatactttt
taattgactataaaataattggaaaagcatatgtaaaaatatcaaaatat
attctacatctgtatcctatgacaaaattatctgacatagttatataaat
acatgcaaaacaaaaaaacagcttttgatctattagttaatttataatct
agtttgattaacaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_128991991_128993122
seq2: B6Ng01-315M03.b_47_1171

seq1  GAATTCATTAGAGCAGATCTGAAGGTTTCATTATTCTTTAAGAGTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAGCAGATCTGAAGGTTTCATTATTCTTTAAGAGTACATT  50

seq1  AATAAAACCACCACACGCTTATTTTTAATACTGTGTATATGAATTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCACCACACGCTTATTTTTAATACTGTGTATATGAATTATTCT  100

seq1  GACAGATAGTTGCAAAGCCAACATATCAATCCTGAAATTAAAAATGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATAGTTGCAAAGCCAACATATCAATCCTGAAATTAAAAATGTAGT  150

seq1  AGGACAAATTAGTGTGTTCCAGCTACCGCAAGCCAAGCTGAACGATAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAATTAGTGTGTTCCAGCTACCGCAAGCCAAGCTGAACGATAAAC  200

seq1  TTTCTTCTTTGAACTCTGGATCTAGCTGTCCTGCGGAGGAAAAATGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTTGAACTCTGGATCTAGCTGTCCTGCGGAGGAAAAATGACTG  250

seq1  TGACCAAGAAAGTGGTAAGAAGCTAAAGCCTAATTGACATTTAAATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGAAAGTGGTAAGAAGCTAAAGCCTAATTGACATTTAAATGAAA  300

seq1  ACAATGCAATTCTATATAGCAAATGCTGTTCTCTCGAGCCCTGAGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAATTCTATATAGCAAATGCTGTTCTCTCGAGCCCTGAGTTTTA  350

seq1  TAGCTTATTGTTCTTTACCCGGGGAGTCTCAAAGAAGGAAGACTGTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTATTGTTCTTTACCCGGGGAGTCTCAAAGAAGGAAGACTGTAGCC  400

seq1  ATTTCATTTGTTTCACATGTCCTTTTATGAGCCTCTCAACACAATTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTGTTTCACATGTCCTTTTATGAGCCTCTCAACACAATTCTTA  450

seq1  CAGTGAAGACAATATACAACAGATAATAACAACTGCTTTTCGCAATCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGACAATATACAACAGATAATAACAACTGCTTTTCGCAATCTAG  500

seq1  CTTCCCTCTGTGAGTGTGTAACAAGCCATATTAAAAATATTTGGAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTGTGAGTGTGTAACAAGCCATATTAAAAATATTTGGAATCAA  550

seq1  AGTGTGTTGCTAACTTACTGCTCCATGAAGTAACGCACCGCACTAGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTGCTAACTTACTGCTCCATGAAGTAACGCACCGCACTAGGTTG  600

seq1  CATCAGTTCTCTAGGCCTAATCTAGCTTTCCCCTAGTGGTTTCAGAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTCTCTAGGCCTAATCTAGCTTTCCCCTAGTGGTTTCAGAGGCC  650

seq1  CAGGGGAGAGACACTGTATCAGTTCCATTTATGAGTTGAAAGATAAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGAGACACTGTATCAGTTCCATTTATGAGTTGAAAGATAAATGG  700

seq1  TTTTGCCCTTAATAAATGTAGAGGACTAGATGAAGAGCTCAGGACAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCTTAATAAATGTAGAGGACTAGATGAAGAGCTCAGGACAACTG  750

seq1  CTTTTTACTCCCTTAAGCAGCAAGACCTTTTTAATCCTCCTCATTCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACTCCCTTAAGCAGCAAGACCTTTTTAATCCTCCTCATTCCCTC  800

seq1  CTCCACTAATTTTGCATGAACTATGCTGTTAGTCACATAAGATGATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTAATTTTGCATGAACTATGCTGTTAGTCACATAAGATGATGAAT  850

seq1  GCTTGAACTAGTCCAGT-AAGGTTGAGCTAATGAGAATGTTGTCATTAAA  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTTGAACTAGTCCAGTAAAGGTTGAGCTAATGAGAATGTTGTCATTAAA  900

seq1  ACGTGCACTATAGCTAAGAGGCAGAAACCAAACTTCTGAGGACACTTAGC  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACGTGCACTATAGCTAAGAGGCAG-AACCAAACTTCTGAGGACACTTAGC  949

seq1  TTTAGTTTTCCCCAGTGCTGCTGATATAGCATTACATATTTGGTCTTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTAGTTTTCCCCAGTGCTGCTGATATAGCATTACATATTTGGTC-TTTT  998

seq1  AAGCAAAGGGACTTCCTTAGTCATGGTGAGACACTTTCTTC-TCTGACAT  1048
      |||| ||||||||||| |||||||||||||||||||||||| ||||||| 
seq2  AAGC-AAGGGACTTCC-TAGTCATGGTGAGACACTTTCTTCTTCTGACA-  1045

seq1  TGATCATGATTTTTCACTGCCTTCAGCCAGTTTCAGC-TATATCCTATGT  1097
      ||||||||| ||||||||||  ||||||||||||||| ||||| ||||||
seq2  TGATCATGA-TTTTCACTGC--TCAGCCAGTTTCAGCTTATAT-CTATGT  1091

seq1  GTTTCAGAGCTCCGAGTGTTCCCTGTATACCTGCT  1132
      ||||  ||||  |||| ||| ||||||||||||||
seq2  GTTTTCGAGCCTCGAGCGTT-CCTGTATACCTGCT  1125


seq1: chrX_129018207_129019325
seq2: B6Ng01-315M03.g_68_1183 (reverse)

seq1  TATTGTTTAATTCAAAATTAGATTATAA--TTACTATTAGAATCAAAAGC  48
      ||||| |||||   ||| ||||||||||  | |||| ||| |||||||||
seq2  TATTG-TTAAT--CAAACTAGATTATAAATTAACTAATAG-ATCAAAAGC  46

seq1  TG--TTTTTGTTTTGCATGTATTTATATAACTATGTTCAGATAATTTTGT  96
      ||  ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTTTTTTGTTTTGCATGTATTTATATAACTATG-TCAGATAATTTTGT  95

seq1  CATAGGATACAGATGTAGAATATATTTTGAATATTTTTACATATGCTTTT  146
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATAGGATACAGATGTAGAATATATTTTG-ATATTTTTACATATGCTTTT  144

seq1  CCAATTATTTTATAGTCAATTTAAAAAGTATTCTCTCATTTACTTACCTT  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAATTATTTTATAGTCAA-TTAAAAAGTATTCTCTCATTTACTTACCTT  193

seq1  TGCATTTATTTAAAAATCTATTTATTTAAAAATAGATTTGCTAATATAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATTTAAAAATCTATTTATTTAAAAATAGATTTGCTAATATAGC  243

seq1  ATATTTTTGTCTAAAACTAGTTCTTACTATCTCCAAGCCTGGCAAGGAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGTCTAAAACTAGTTCTTACTATCTCCAAGCCTGGCAAGGAAC  293

seq1  TTGAAAAGTATATTATTTGATTTTGACCTTGAACTTATGATTCTTTCTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGTATATTATTTGATTTTGACCTTGAACTTATGATTCTTTCTCC  343

seq1  TCACCTTCATGAGTGCTTGGATTATAATAGTGTGGTATGGTGGCTAACTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCATGAGTGCTTGGATTATAATAGTGTGGTATGGTGGCTAACTC  393

seq1  AACAGCTTGTTAGTAATATGAGTATTCTTAGTGTATTTGTATTGTTAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTGTTAGTAATATGAGTATTCTTAGTGTATTTGTATTGTTAAAA  443

seq1  TTTGAATATAAAATGAAAAATTCTCTATAATGCTGTAAATCTATTAATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATAAAATGAAAAATTCTCTATAATGCTGTAAATCTATTAATCA  493

seq1  TTTTCAGACAAAAATGACATCTCAAATAAAGATACTTCTAAGATATTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGACAAAAATGACATCTCAAATAAAGATACTTCTAAGATATTCTC  543

seq1  ATATGTATTTGAGCTGCAGTTGCATAGTCCACATTGCTCTCAGTACTACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTTGAGCTGCAGTTGCATAGTCCACATTGCTCTCAGTACTACT  593

seq1  ACTTTCCTGGTTCCTACTAGGAAAATCCATTAAGCCCAACCAACAGCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTGGTTCCTACTAGGAAAATCCATTAAGCCCAACCAACAGCATT  643

seq1  CAGCCACTTTCCTAATGCAAATTACTAGTTGATTATATTTTTTGTTGTAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTTTCCTAATGCAAATTACTAGTTGATTATATTTTTTGTTGTAG  693

seq1  TATTTAATGGATGGAAATTTTACATGTGAATGAGAAGTGTAAGTGTGTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGGATGGAAATTTTACATGTGAATGAGAAGTGTAAGTGTGTGT  743

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGAGAGA  793

seq1  GAAAGACAGAGACAGAGATTTAAAAGGAGGAGGAAGAAGGAGGCAGAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGAGACAGAGATTTAAAAGGAGGAGGAAGAAGGAGGCAGAAAC  843

seq1  TATGGAAAAGTGATATATTGGGATTATTAACCTTTATGATATTTTTAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAAGTGATATATTGGGATTATTAACCTTTATGATATTTTTAAAT  893

seq1  TGATTCTGTAAGTTTTTAGCTGTTATCTTCTTAAATCCTGGTTCTATCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGTAAGTTTTTAGCTGTTATCTTCTTAAATCCTGGTTCTATCAA  943

seq1  GTTTTCTGTCTGTCTTCTAGTTTTATACATAATTTAAATTGAAGTCCCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTCTGTCTTCTAGTTTTATACATAATTTAAATTGAAGTCCCAG  993

seq1  TTCTTAATATTTTGGAGCACTATTGATGGTTTTCTATCCTTTAAAATAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATATTTTGGAGCACTATTGATGGTTTTCTATCCTTTAAAATAAA  1043

seq1  TTTCTATATCTACCTAAAATATTGTTATTTCTCCATCCCTACTTTGAATA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATCTACCTAAAATATTGTTATTTCTCCATCCCTACTTTGAATA  1093

seq1  GCGATAAACTTCCCAAAGAATTC  1119
      |||||||||||||||||||||||
seq2  GCGATAAACTTCCCAAAGAATTC  1116


| Home | SequenceCutter | Blast | Download |