BAC Information

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BAC

Clone NameB6Ng01-316A14
ChromosomeX (Build37)
Map Location 120,297,521 - 120,429,578
singlet/doubletdoublet
Overlap geneLOC100039751
Upstream geneNap1l3, 3110007F17Rik
Downstream geneLOC100039763, LOC665281, EG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316A14.bB6Ng01-316A14.g
ACCGA106532GA106533
length1,170776
definitionB6Ng01-316A14.b B6Ng01-316A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,297,521 - 120,298,696)(120,428,808 - 120,429,578)
sequence
gaattctttgtttagctctgtaccccatttttaatagggttatttgattt
ttctggaattcatcttcctgagttctttatatatattggatattagtctc
atatatgatttaggataggtaaagatcctttccaaatcttttagtggcct
ttttgtcttattgactgtgtcttttgccttacagaagctttgcaattttc
tgaggtccggtttgtggattctcaatcttacagcacaagccattgctctt
ctgttcaagaattttccccctgtgcccatatcttaatggctttgatccac
tttcttctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagacttgattgagctactttttctttcttttctagatatattg
gattttttgctaacattcattgtagaacaatatgggaaatgttcgtaaaa
cattcctaaatgttccataaccttcccaaacattgtctctagctggagac
caagtgtttaaatatattagcctactcaaaataatttatattcaaatcat
aataagactgaagctatggtgacaacgagaggcataaattgcttctgagt
aaatatttcacacaaaattgacaactttgaccatagaacaggagctgagt
taacatgtcagtggtgggcataaatataccacctcctgtttaaacgtgta
cattgtgtttaaactgtaagacagagttcgcaacacctattcccttgttt
ctcttcccaatatttcattattgaaaaaagcttctttgtctgaatttttt
tacttgtctatttggttgttatataggagataggtggcgaggcatattac
ttctatgacttcaacctttgtgattgctagtcttagttgttaactttact
gaatagggaactaagtaaaagtgaaaagcactggatataactataagtga
tttttggttctttgcctcattgaggtctaaaacctatcctaactctgggc
caacatattcttgtgctagcctatgtaagcacaatagaaagaccccttgg
gttttgcctgcttgtcttcattctcaacaagtatgctggtcttgaaagtt
ttaagtatatttctttgaagccaaacataattcttgaaagaactctgaat
ccagtcctgtggacagaaga

gaattctgtgaatatttacagaaaaggtgactagaaggtgtaatagtcct
gaagtgggcagtgggtaatgagtgtctgttcaacgactaacgttatggcc
agttttatctgtctgtgacctgacctctgcttacattttactttttccat
ggtctcccttgagcttgctttttctctgaggtctcaaggataggtacttg
gagttctttccagcaggagttttggtttttgcagacacagagacagagag
aatgtgtccttattatgggccctgtcattgtaactctaggggagggagag
tcagcccaggctgctgcaggaggatgcagcacagaaaccacctgtctgtt
gtctgcatagcctcaggggaagggggaagggggaaaggaggatgggagcc
tctgtctgtacaacactgaagtctctctactatcagtaatctgagggtta
caacattctcccctctttttggtgacgatagaggccaatcttggactctt
tataggcctaaatcatctgtgctaactggtttttacagggaccttcatca
ccatcagttgaaatagttccctaatctctgctttatatactgcaaaagct
tttttgattatgcatggcccaaatgtgagcagcaaacaaaaaaattataa
gggccctgtaattgtggaaatgaaagtagttaaccatggggaattatcaa
tagggaatgatgccatcttttggaagttttctttgttttattgggccctc
tttatgctttctctttatcttagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_120297521_120298696
seq2: B6Ng01-316A14.b_49_1218

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTT  50

seq1  TTCTGGAATTCATCTTCCTGAGTTCTTTATATATATTGGATATTAGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATTCATCTTCCTGAGTTCTTTATATATATTGGATATTAGTCTC  100

seq1  ATATATGATTTAGGATAGGTAAAGATCCTTTCCAAATCTTTTAGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGATTTAGGATAGGTAAAGATCCTTTCCAAATCTTTTAGTGGCCT  150

seq1  TTTTGTCTTATTGACTGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACTGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTC  200

seq1  TGAGGTCCGGTTTGTGGATTCTCAATCTTACAGCACAAGCCATTGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCGGTTTGTGGATTCTCAATCTTACAGCACAAGCCATTGCTCTT  250

seq1  CTGTTCAAGAATTTTCCCCCTGTGCCCATATCTTAATGGCTTTGATCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAGAATTTTCCCCCTGTGCCCATATCTTAATGGCTTTGATCCAC  300

seq1  TTTCTTCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA  350

seq1  TCCACTTAGACTTGATTGAGCTACTTTTTCTTTCTTTTCTAGATATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGACTTGATTGAGCTACTTTTTCTTTCTTTTCTAGATATATTG  400

seq1  GATTTTTTGCTAACATTCATTGTAGAACAATATGGGAAATGTTCGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTGCTAACATTCATTGTAGAACAATATGGGAAATGTTCGTAAAA  450

seq1  CATTCCTAAATGTTCCATAACCTTCCCAAACATTGTCTCTAGCTGGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTAAATGTTCCATAACCTTCCCAAACATTGTCTCTAGCTGGAGAC  500

seq1  CAAGTGTTTAAATATATTAGCCTACTCAAAATAATTTATATTCAAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTTAAATATATTAGCCTACTCAAAATAATTTATATTCAAATCAT  550

seq1  AATAAGACTGAAGCTATGGTGACAACGAGAGGCATAAATTGCTTCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACTGAAGCTATGGTGACAACGAGAGGCATAAATTGCTTCTGAGT  600

seq1  AAATATTTCACACAAAATTGACAACTTTGACCATAGAACAGGAGCTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCACACAAAATTGACAACTTTGACCATAGAACAGGAGCTGAGT  650

seq1  TAACATGTCAGTGGTGGGCATAAATATACCACCTCCTGTTTAAACGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTCAGTGGTGGGCATAAATATACCACCTCCTGTTTAAACGTGTA  700

seq1  CATTGTGTTTAAACTGTAAGACAGAGTTCGCAACACCTATTCCCTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTTTAAACTGTAAGACAGAGTTCGCAACACCTATTCCCTTGTTT  750

seq1  CTCTTCCCAATATTTCATTATTGAAAAAAGCTTCTTTGTCTGAATTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAATATTTCATTATTGAAAAAAGCTTCTTTGTCTGAATTTTTT  800

seq1  TACTTGTCTATTTGGTTGTTATATAGGAGATAGGTGGCGAGGCATATTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCTATTTGGTTGTTATATAGGAGATAGGTGGCGAGGCATATTAC  850

seq1  TTCTATGACTTCAACCTTTGTGATTGCTAGTCTTAGTTGTTAACTTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGACTTCAACCTTTGTGATTGCTAGTCTTAGTTGTTAACTTTACT  900

seq1  GAATAGGGAACTAAGTAAAAGTGAAAAGCACTGGATATAACTATAAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGGAACTAAGTAAAAGTGAAAAGCACTGGATATAACTATAAGTGA  950

seq1  TTTTTGGTTCTTTGCCTCATTTGAGGTCTAAAAACCTATCCTAACTCTGG  1000
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TTTTTGGTTCTTTGCCTCA-TTGAGGTCT-AAAACCTATCCTAACTCTGG  998

seq1  GCC-ACATATTCTTGTGCTAGCCTATGTAAAGCAC-ATAG-AAGACCCCT  1047
      ||| |||||||||||||||||||||||| |||||| |||| |||||||| 
seq2  GCCAACATATTCTTGTGCTAGCCTATGT-AAGCACAATAGAAAGACCCC-  1046

seq1  TTGGTTTTTGCCTGCTTGTCTTCATTCTC-ACAGGTATGCTTGTTCTTTT  1096
      |||| |||||||||||||||||||||||| ||| ||||||| |   | ||
seq2  TTGGGTTTTGCCTGCTTGTCTTCATTCTCAACAAGTATGCTGG---TCTT  1093

seq1  GAAGGTTTTAAAGTATATTTCTTTGAGAGCCCAACAT-ATTCT--GAAGA  1143
      ||| ||||| |||||||||||||||| |||| ||||| |||||   ||||
seq2  GAAAGTTTT-AAGTATATTTCTTTGA-AGCCAAACATAATTCTTGAAAGA  1141

seq1  ACATCTGGGAAATTCAGTCCTGTGGACAGAAGA  1176
      || ||||   ||| |||||||||||||||||||
seq2  AC-TCTG---AATCCAGTCCTGTGGACAGAAGA  1170


seq1: chrX_120428808_120429578
seq2: B6Ng01-316A14.g_69_844 (reverse)

seq1  TAGCTAAGGT-TAGAGAAAGCATAGAGAGGTGCCAAAGAGAAC-AAGAAA  48
      |||||||| |  |||||||||||| ||||| ||| || | ||| ||||||
seq2  TAGCTAAGATAAAGAGAAAGCATAAAGAGG-GCCCAATAAAACAAAGAAA  49

seq1  AC-TCCAAAAGCTGGCATCATTCCCTATTTGATAATTCCCCATGGTTAAC  97
      || |||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  ACTTCCAAAAGATGGCATCATTCCCTA-TTGATAATTCCCCATGGTTAAC  98

seq1  TACTCTCATTTCCACAATTACAGGGCCCCTTATAATTTTTTTG-TTGCTG  146
      |||| |||||||||||||||||||| ||||||||||||||||| ||||||
seq2  TACTTTCATTTCCACAATTACAGGG-CCCTTATAATTTTTTTGTTTGCTG  147

seq1  CTCACATTTGGGCCATGCATAATC-AAAAAGCTTTTGCAGTATATAAAGC  195
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCACATTTGGGCCATGCATAATCAAAAAAGCTTTTGCAGTATATAAAGC  197

seq1  AGAGATTAGGG-ACTA-TTCAACTGATGGTGATG-AGGTCCCTGTAAAAA  242
      ||||||||||| |||| ||||||||||||||||| |||||||||||||||
seq2  AGAGATTAGGGAACTATTTCAACTGATGGTGATGAAGGTCCCTGTAAAAA  247

seq1  CCAGTTAGCACAGATGATTTAGGCCTATAAAGAGTCCAAGATTGGCCTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGCACAGATGATTTAGGCCTATAAAGAGTCCAAGATTGGCCTCT  297

seq1  ATCGTCACCAAAAAGAGGGGAGAATGTTGTAACCCTCAGATTACTGATAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCACCAAAAAGAGGGGAGAATGTTGTAACCCTCAGATTACTGATAG  347

seq1  TAGAGAGACTTCAGTGTTGTACAGACAGAGGCTCCCATCCTCCTTTCCCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGACTTCAGTGTTGTACAGACAGAGGCTCCCATCCTCCTTTCCCC  397

seq1  CTTCCCCCTTCCCCTGAGGCTATGCAGACAACAGACAGGTGGTTTCTGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCTTCCCCTGAGGCTATGCAGACAACAGACAGGTGGTTTCTGTG  447

seq1  CTGCATCCTCCTGCAGCAGCCTGGGCTGACTCTCCCTCCCCTAGAGTTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCCTCCTGCAGCAGCCTGGGCTGACTCTCCCTCCCCTAGAGTTAC  497

seq1  AATGACAGGGCCCATAATAAGGACACATTCTCTCTGTCTCTGTGTCTGCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGGGCCCATAATAAGGACACATTCTCTCTGTCTCTGTGTCTGCA  547

seq1  AAAACCAAAACTCCTGCTGGAAAGAACTCCAAGTACCTATCCTTGAGACC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACTCCTGCTGGAAAGAACTCCAAGTACCTATCCTTGAGACC  597

seq1  TCAGAGAAAAAGCAAGCTCAAGGGAGACCATGGAAAAAGTAAAATGTAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAAAAAGCAAGCTCAAGGGAGACCATGGAAAAAGTAAAATGTAAG  647

seq1  CAGAGGTCAGGTCACAGACAGATAAAACTGGCCATAACGTTAGTCGTTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCAGGTCACAGACAGATAAAACTGGCCATAACGTTAGTCGTTGA  697

seq1  ACAGACACTCATTACCCACTGCCCACTTCAGGACTATTACACCTTCTAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTCATTACCCACTGCCCACTTCAGGACTATTACACCTTCTAGT  747

seq1  CACCTTTTCTGTAAATATTCACAGAATTC  771
      |||||||||||||||||||||||||||||
seq2  CACCTTTTCTGTAAATATTCACAGAATTC  776


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