BAC Information

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BAC

Clone NameB6Ng01-318O24
ChromosomeX (Build37)
Map Location 43,263,731 - 43,264,827
singlet/doubletsinglet
Overlap genenone
Upstream gene1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318O24.bB6Ng01-318O24.g
ACCGA108699GA108700
length1,1011,155
definitionB6Ng01-318O24.b B6Ng01-318O24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgtccacaaagccagaaaaccttgaccatttggagaggctaa
tagcagctaagacatgtcacaacaatgggaataccacagaagaccatcgt
aagcattttttaagccaatttatgtcatttccttccagaaaatatttcaa
aatatttcaagacatcccagacatttgttacctgaaaatttacatgccaa
ttaaacttaatcagtagatcgagtttttaaatatgcccaagagaacagaa
taactaaaccaaatatttggatagatataccacttatctataatcctact
tagaacttcacagttatctcatagagttggctttttttagttgttatgaa
agaactgtgtcctaattctcaaacacaaaattcagtatttattggacttc
tttgaatgtacagtattataagctttgtgaaatgtttgaatgtacagtgt
attataagcttggtgttatgtttttgtctaggaatgtctagtaaaaggca
gagacaatattttagtcagattatgattttatcaacaaagacaaatagaa
aaaggaattataaaacagacacaattttaataaaaatactgacttttttt
gagaaatttacttgagaataagataataggctttaaacttgtgattactt
gccaggcagaaactaattcaataaaagtatttgtgattttgatgaaatat
tttgtaagatattttagagagacatgttgaaacctgatatacaacctacc
catgtttgtgaaaactaagcacattaagttcaactcccaagacaactgca
ttttataaataaagaaaaatcaaaagaagtaaatgtatctttattcaaaa
accaaattgtactcaggaatagcatttgtattataataaagtatgtgaat
atcattgtatttgaccctgcttcatttttattagcatttagtagtttcat
agtataaaatgtatttattgccctctttttctgcaaaaatgtaagctatg
tatttcatggattttttcctttactatatgtccaaaaaccacttaaggaa
attttctgtcatagttatccccctcaacattatcttccatgaatgacaga
a
gaattctttgtttagctctgtaccccattttaatggggttatttgaattt
ctggagttcaggttcttgagttctttgtatatattggatattattccact
atcagatttagaattggtaaaaatcctttcctaaactgttgatggccttt
tttgacttattgaaagtgtttttcccttaccctttgaaattgctttgcaa
ttttatgaggtcccatttgtcaattcttgatcttacagcacaagccattg
gtgttcagtttaggaattttccccagtgtccatatcttcgaggctttccc
ccactttctcctctataaatttcagtatatcttgttttctgtagtgttct
ttgatccacttagacttgagctttgtaaaaggagataagaatggatcaat
tcacattcctctacatgataactgccagttgtgtcagcaccatttgttga
agatgctgtcttttttccactggatggtttttgctcccttgtcaaagatc
aagtgaccataagtttgtgggttcatttctgtgtctttgattctattcca
ttgatctacctgtctgttgctgtacaagtaccatgaagtttttatcacaa
ttgctctatcgtacagcttcaggtcaggcatggtggttcccccagaggtt
cttttattgtgaatagtttttgttatcctaggttttttattattccgggt
gaattagcaaattgccctttctaagtcattgaagaattgagatggaattt
tgatggggattgcattgaatctgtagtttgctttcagcacgatagccatt
ttgactatattaatcctgccaatccatgagccagggagatcttttcatct
tctgagatcttcaaattctttcttcagagacttgaagttcttatcataca
gatctttcccttttttagttagagtcaccaccaaggtattttatattatt
ctatgactatgtgaaggtgtgtttcccctattaatttctcagtccattat
cattgtgtaagaaaggccatgattgttgagttattttatatcagctactc
actgagcttgtttattcaggttaggtgtttcagtggtagaaattttaagt
tacgtattatacctatccaattcttctggcaatagcgagatactattttt
gtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_43263731_43264827
seq2: B6Ng01-318O24.b_49_1149 (reverse)

seq1  TTCTGTCATTCATGGAAGAT-ATGTTGA--GGGATAACTATGAACAAGAA  47
      |||||||||||||||||||| |||||||  |||||||||||| |||  ||
seq2  TTCTGTCATTCATGGAAGATAATGTTGAGGGGGATAACTATG-ACAGAAA  49

seq1  ATTTTCTTAAGTG--TTTTGGACATAATAGTAAA-GAAAAAATCCATGAA  94
      |||| ||||||||  |||||||||| |||||||| |||||||||||||||
seq2  ATTTCCTTAAGTGGTTTTTGGACAT-ATAGTAAAGGAAAAAATCCATGAA  98

seq1  ATAACATAGCTTACATTTTTGCAG-AAAAGAGGGCAATAAATACATTTTA  143
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AT-ACATAGCTTACATTTTTGCAGAAAAAGAGGGCAATAAATACATTTTA  147

seq1  TACTATGAAACTACTAAATGCTAATAAAAATGAAGCAGGGTCAAATACAA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGAAACTACTAAATGCTAATAAAAATGAAGCAGGGTCAAATACAA  197

seq1  TGATATTCACATACTTTATTATAATACAAATGCTATTCCTGAGTACAATT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCACATACTTTATTATAATACAAATGCTATTCCTGAGTACAATT  247

seq1  TGGTTTTTGAATAAAGATACATTTACTTCTTTTGATTTTTCTTTATTTAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTGAATAAAGATACATTTACTTCTTTTGATTTTTCTTTATTTAT  297

seq1  AAAATGCAGTTGTCTTGGGAGTTGAACTTAATGTGCTTAGTTTTCACAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAGTTGTCTTGGGAGTTGAACTTAATGTGCTTAGTTTTCACAAA  347

seq1  CATGGGTAGGTTGTATATCAGGTTTCAACATGTCTCTCTAAAATATCTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTAGGTTGTATATCAGGTTTCAACATGTCTCTCTAAAATATCTTA  397

seq1  CAAAATATTTCATCAAAATCACAAATACTTTTATTGAATTAGTTTCTGCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTTCATCAAAATCACAAATACTTTTATTGAATTAGTTTCTGCC  447

seq1  TGGCAAGTAATCACAAGTTTAAAGCCTATTATCTTATTCTCAAGTAAATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTAATCACAAGTTTAAAGCCTATTATCTTATTCTCAAGTAAATT  497

seq1  TCTCAAAAAAAGTCAGTATTTTTATTAAAATTGTGTCTGTTTTATAATTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAAAGTCAGTATTTTTATTAAAATTGTGTCTGTTTTATAATTC  547

seq1  CTTTTTCTATTTGTCTTTGTTGATAAAATCATAATCTGACTAAAATATTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTATTTGTCTTTGTTGATAAAATCATAATCTGACTAAAATATTG  597

seq1  TCTCTGCCTTTTACTAGACATTCCTAGACAAAAACATAACACCAAGCTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTTTTACTAGACATTCCTAGACAAAAACATAACACCAAGCTTA  647

seq1  TAATACACTGTACATTCAAACATTTCACAAAGCTTATAATACTGTACATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACTGTACATTCAAACATTTCACAAAGCTTATAATACTGTACATT  697

seq1  CAAAGAAGTCCAATAAATACTGAATTTTGTGTTTGAGAATTAGGACACAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTCCAATAAATACTGAATTTTGTGTTTGAGAATTAGGACACAG  747

seq1  TTCTTTCATAACAACTAAAAAAAGCCAACTCTATGAGATAACTGTGAAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATAACAACTAAAAAAAGCCAACTCTATGAGATAACTGTGAAGT  797

seq1  TCTAAGTAGGATTATAGATAAGTGGTATATCTATCCAAATATTTGGTTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTAGGATTATAGATAAGTGGTATATCTATCCAAATATTTGGTTTA  847

seq1  GTTATTCTGTTCTCTTGGGCATATTTAAAAACTCGATCTACTGATTAAGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTGTTCTCTTGGGCATATTTAAAAACTCGATCTACTGATTAAGT  897

seq1  TTAATTGGCATGTAAATTTTCAGGTAACAAATGTCTGGGATGTCTTGAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGCATGTAAATTTTCAGGTAACAAATGTCTGGGATGTCTTGAAA  947

seq1  TATTTTGAAATATTTTCTGGAAGGAAATGACATAAATTGGCTTAAAAAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAATATTTTCTGGAAGGAAATGACATAAATTGGCTTAAAAAAT  997

seq1  GCTTACGATGGTCTTCTGTGGTATTCCCATTGTTGTGACATGTCTTAGCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACGATGGTCTTCTGTGGTATTCCCATTGTTGTGACATGTCTTAGCT  1047

seq1  GCTATTAGCCTCTCCAAATGGTCAAGGTTTTCTGGCTTTGTGGACACAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAGCCTCTCCAAATGGTCAAGGTTTTCTGGCTTTGTGGACACAGA  1097

seq1  ATTC  1097
      ||||
seq2  ATTC  1101