BAC Information

Click to search

BAC

Clone NameB6Ng01-320B17
ChromosomeX (Build37)12 (Build37)
Map Location 159,699,771 - 159,700,66027,259,321 - 27,260,341
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2, Bmx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320B17.bB6Ng01-320B17.g
ACCGA109564GA109565
length9141,073
definitionB6Ng01-320B17.b B6Ng01-320B17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,699,771 - 159,700,660)(27,259,321 - 27,260,341)
sequence
gaattcccggatgagctttaaattgggccttcaactcacttgggggtctc
tccatctaagaatgagggaccccacacacacgcatgctggtcttctgcag
aataaaatactccttgcttttacataccgtttgtgtctggggtatcgttc
ttcaagaacaacggaaccttacacaatgacctaaggaaaaaagtgttttt
gatgtaatgccctgtggtgaatggaggaagaatggcagagcactggaatt
ggctttgtgcctcctggatagtggaggttggttctgggaggaagaaggga
atgagaaatagagggagaagaatcagagataacagagcactccaatttaa
tctataataaaagaaacattaaagaaattggggaaactatttctattgat
tccaagtggtttgcacatggtgatacatgcttgtaatgccagcactcagg
aggtagaagcaggagaatcaggagttcaaggttatttggagttaaacatc
aggttcaaagcaagactgggctccatgaaacccagtctccagtaattttt
taaaatatgaccattgtggtttgaataatattgaattgattattaataca
caagagatcagatttttctccttccattgtagttaatctcacaacaggtg
tttttccagcttgagttaggataggcaatattttagtgctaccaacattg
tctttctaacagcattaaccacgtaaaaggttatcctacgatatgcagag
aaacactttttcagaagcttgagtggagatgaccaccttttctcttgatc
tttctcatggctccaagtctatctcaacagaaattctttttttttttttt
ctttttggtttttttgagacagggttttctcttgtataggccctgggctt
gtcctgggaactca
gaattctgtggggttagaggaggggaaaagagggaagaagggagggaggt
tggagaaaacactcgatgctgttcaccataaagaaaatgcaaatttaatt
ccccagtgataagcttctccaaggatgactagactaaacaagggacaatg
gggaccaaagttctcagatgttgctggaggaactaaagacagtgagattg
gtgtagaaacaccttggcccctaatacaaatcactgaatgatccataaat
taaagcctgggttgcatccaaagactgttaaaacaagtatccccttgaca
acccattcaaatgtccgtagtagcattactgggatcagtcaaaatgtgta
aataattcacacactcatcaaattacatggatggacaaaacaggatgtcc
acacaaagtaaagacacccagtactaaaatgaacaaaaatccaagagact
ctacagtagtagtaatgtttagaaatgttgcacacaccagtcatagactc
tgtttgtaagaaaccaccagcacacacaaatctatggagaccgaaattag
attaatggtgaggtccactaggactgacagtggtagataatttgtgggct
attgttggacatatggatttctctttgaagtgacaggatgtttccaaact
ggttgagatgatgcatgcaagaatagcctgggaagcacagtgcgtatcac
actgtctctagtatttggtttgttgttgtttgtttgctttttttcagaag
gtctcactgtgtagccctagatgccatggcattctttttgtacaccaggg
tgggcatgaattcacctacagcatcctgcttctgccacctgagtgctagg
attaaaaggcatgtgccaccataccgggcactggatagcccacttacatg
aactgatcatgtagtggctagagtgtatcgatttggaagattgatttaaa
agttatttgcagctcagatcccacttgccttacccactaattagcaatga
gatggggtattttggccaaaggctatcatatgatggccagagtgttaagt
cttcttgagattcctgtctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159699771_159700660
seq2: B6Ng01-320B17.b_57_956 (reverse)

seq1  TGAGTT-CCAGGACA--GCCAGGG-CTATAC-AGAG-AAACCCTGTCTCA  44
      |||||| ||||||||   |||||| |||||| |||| |||||||||||||
seq2  TGAGTTCCCAGGACAAGCCCAGGGCCTATACAAGAGAAAACCCTGTCTCA  50

seq1  AAAAACCAAAAAAG---AAAAAAAAAAAGAATTTCTGTTGAGATAGACTT  91
      ||||| | ||||||   |||||||||||||||||||||||||||||||||
seq2  AAAAAACCAAAAAGAAAAAAAAAAAAAAGAATTTCTGTTGAGATAGACTT  100

seq1  GGAGCCATGAGAAAGATCAAGAGAAAAGGTGGTCATCTCCACTCAAGCTT  141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGAGAAAGATCAAGAGAAAAGGTGGTCATCTCCACTCAAGCTT  150

seq1  CTGAAAAAGTGTTTCTCTGCATATCGTAGGATAACCTTTTACGTGGTTAA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAGTGTTTCTCTGCATATCGTAGGATAACCTTTTACGTGGTTAA  200

seq1  TGCTGTTAG-AAGACAATGTTGGTAGCACTAAAATATTGCCTATCCTAAC  240
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTAGAAAGACAATGTTGGTAGCACTAAAATATTGCCTATCCTAAC  250

seq1  TCAAGCTGGAAAAACACCTGTTGTGAGATTAACTACAATGGAAGGAGAAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGGAAAAACACCTGTTGTGAGATTAACTACAATGGAAGGAGAAA  300

seq1  AATCTGATCTCTTGTGTATTAATAATCAATTCAATATTATTC-AACCACA  339
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATCTGATCTCTTGTGTATTAATAATCAATTCAATATTATTCAAACCACA  350

seq1  ATGGTCATATTTTAAAAAATTACTGGAGACTGGGTTTCATGGAGCCCAGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATATTTTAAAAAATTACTGGAGACTGGGTTTCATGGAGCCCAGT  400

seq1  CTTGCTTTGAACCTGATGTTTAACTCCAAATAACCTTGAACTCCTGATTC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTGAACCTGATGTTTAACTCCAAATAACCTTGAACTCCTGATTC  450

seq1  TCCTGCTTCTACCTCCTGAGTGCTGGCATTACAAGCATGTATCACCATGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCTACCTCCTGAGTGCTGGCATTACAAGCATGTATCACCATGT  500

seq1  GCAAACCACTTGGAATCAATAGAAATAGTTTCCCCAATTTCTTTAATGTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCACTTGGAATCAATAGAAATAGTTTCCCCAATTTCTTTAATGTT  550

seq1  TCTTTTATTATAGATTAAATTGGAGTGCTCTGTTATCTCTGATTCTTCTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTATAGATTAAATTGGAGTGCTCTGTTATCTCTGATTCTTCTC  600

seq1  CCTCTATTTCTCATTCCCTTCTTCCTCCCAGAACCAACCTCCACTATCCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTTCTCATTCCCTTCTTCCTCCCAGAACCAACCTCCACTATCCA  650

seq1  GGAGGCACAAAGCCAATTCCAGTGCTCTGCCATTCTTCCTCCATTCACCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACAAAGCCAATTCCAGTGCTCTGCCATTCTTCCTCCATTCACCA  700

seq1  CAGGGCATTACATCAAAAACACTTTTTTCCTTAGGTCATTGTGTAAGGCT  739
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGGGCATTACATCAAAAACACTTTTTTCCTTAGGTCATTGTGTAAGGTT  750

seq1  CTGTTGTTCTTGAAGAATGATACCCCAGACACAAACGGTATGTAAAAGCA  789
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCGTTGTTCTTGAAGAACGATACCCCAGACACAAACGGTATGTAAAAGCA  800

seq1  AGGAGTATTTTATTCTGCAGAAGACCAGCATGTGTGTGTGTGGGGTCCCT  839
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGAGTATTTTATTCTGCAGAAGACCAGCATGCGTGTGTGTGGGGTCCCT  850

seq1  CATTCTTAGATGGAGAGACCCCAAAGTGGGTTTGAAGGCCCAATTTAAAG  889
      |||||||||||||||||||||| ||||| | |||||||||||||||||||
seq2  CATTCTTAGATGGAGAGACCCCCAAGTGAG-TTGAAGGCCCAATTTAAAG  899

seq1  C  890
      |
seq2  C  900

seq1: chr12_27259321_27260341
seq2: B6Ng01-320B17.g_115_1138 (reverse)

seq1  GGAG-GACAGG-ATCTC-AGGAGACTTAACCACCTCTGGCCATCATATGA  47
      |||| |||||| ||||| || |||||||||   |||||||||||||||||
seq2  GGAGAGACAGGAATCTCAAGAAGACTTAAC--ACTCTGGCCATCATATGA  48

seq1  TAAGCCTTTGG-CAAAATA-CCCATCTCATTTGCTAATTAGTGGGT-AGG  94
      | ||||||||| ||||||| ||||||||| |||||||||||||||| |||
seq2  T-AGCCTTTGGCCAAAATACCCCATCTCA-TTGCTAATTAGTGGGTAAGG  96

seq1  C-AGTGGGATCTGAGCTGCAAATAACTTTTAAATCAATCTTCAAAATCGA  143
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAGTGGGATCTGAGCTGCAAATAACTTTTAAATCAATCTTCCAAATCGA  146

seq1  TACACTCTAGCCACTACATGATCAGTTCATGTAAGTGGGCTATCCAGTGC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTAGCCACTACATGATCAGTTCATGTAAGTGGGCTATCCAGTGC  196

seq1  CCGGTATGGTGGCACATGCC-TTTAATCCTAGCACTCAGGTGGCAGAAGC  242
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCGGTATGGTGGCACATGCCTTTTAATCCTAGCACTCAGGTGGCAGAAGC  246

seq1  AGGATGCTGTAGGTGAATTCATGCCCACCCTGGTGTACAAAAAGAATGCC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTGTAGGTGAATTCATGCCCACCCTGGTGTACAAAAAGAATGCC  296

seq1  ATGGCATCTAGGGCTACACAGTGAGACCTTCCTGAAAAAAAGCAAACAAA  342
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGGCATCTAGGGCTACACAGTGAGACCTT-CTGAAAAAAAGCAAACAAA  345

seq1  CAACAACAAACCAAATACTAGAGACAGTGTGATACGCACTGTGCTTCCCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAACCAAATACTAGAGACAGTGTGATACGCACTGTGCTTCCCA  395

seq1  GGCTATTCTTGCATGCATCATCTCAACCAGTTTGGAAACATCCTGTCACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCTTGCATGCATCATCTCAACCAGTTTGGAAACATCCTGTCACT  445

seq1  TCAAAGAGAAATCCATATGTCCAACAATAGCCCACAAATTATCTACCACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGAAATCCATATGTCCAACAATAGCCCACAAATTATCTACCACT  495

seq1  GTCAGTCCTAGTGGACCTCACCATTAATCTAATTTCGGTCTCCATAGATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCTAGTGGACCTCACCATTAATCTAATTTCGGTCTCCATAGATT  545

seq1  TGTGTGTGCTGGTGGTTTCTTACAAACAGAGTCTATGACTGGTGTGTGCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCTGGTGGTTTCTTACAAACAGAGTCTATGACTGGTGTGTGCA  595

seq1  ACATTTCTAAACATTACTACTACTGTAGAGTCTCTTGGATTTTTGTTCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTAAACATTACTACTACTGTAGAGTCTCTTGGATTTTTGTTCAT  645

seq1  TTTAGTACTGGGTGTCTTTACTTTGTGTGGACATCCTGTTTTGTCCATCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACTGGGTGTCTTTACTTTGTGTGGACATCCTGTTTTGTCCATCC  695

seq1  ATGTAATTTGATGAGTGTGTGAATTATTTACACATTTTGACTGATCCCAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTTGATGAGTGTGTGAATTATTTACACATTTTGACTGATCCCAG  745

seq1  TAATGCTACTACGGACATTTGAATGGGTTGTCAAGGGGATACTTGTTTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTACTACGGACATTTGAATGGGTTGTCAAGGGGATACTTGTTTTA  795

seq1  ACAGTCTTTGGATGCAACCCAGGCTTTAATTTATGGATCATTCAGTGATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTTGGATGCAACCCAGGCTTTAATTTATGGATCATTCAGTGATT  845

seq1  TGTATTAGGGGCCAAGGTGTTTCTACACCAATCTCACTGTCTTTAGTTCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGGGGCCAAGGTGTTTCTACACCAATCTCACTGTCTTTAGTTCC  895

seq1  TCCAGCAACATCTGAGAACTTTGGTCCCCATTGTCCCTTGTTTAGTCTAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACATCTGAGAACTTTGGTCCCCATTGTCCCTTGTTTAGTCTAG  945

seq1  TCATCCTTGGAGAAGCTTATCACTGGGGAATTAAATTTGCATTTTCTTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTGGAGAAGCTTATCACTGGGGAATTAAATTTGCATTTTCTTTA  995

seq1  TGGTGAACAGCATCGAGTGTTTTCTCCAA  1021
      |||||||||||||||||||||||||||||
seq2  TGGTGAACAGCATCGAGTGTTTTCTCCAA  1024