BAC Information

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BAC

Clone NameB6Ng01-320H02
ChromosomeX (Build37)
Map Location 39,510,120 - 39,637,486
singlet/doubletdoublet
Overlap geneStag2
Upstream geneLOC385344, Gria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4
Downstream geneLOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320H02.bB6Ng01-320H02.g
ACCGA109807GA109808
length1,095506
definitionB6Ng01-320H02.b B6Ng01-320H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,636,416 - 39,637,486)(39,510,120 - 39,510,631)
sequence
gaattcttaactctgctacatgatgccaaggccttagcttctgttcatga
ccacttcagctctgcatctctcatggcaacaaaaccttttaaacatttcc
aaggtgccagcatgagaatcagccttagtccctatagattacaactctgt
gtgcttattgaagctacatattcttaacacagcctgatagaatctttgag
agattctccaacttccttctgaaacatcacaagccagatttttattacct
gcactgttttaagcattcgtaacctcccaagctcccaaagaacgggtcac
tgagctttggtctctggtgactattccacccaaagtttcaaacacgccct
aaaacaacaaggtcacgtctgtgatagcaataaccaacaattctgaaccc
gctttcgcactacctttctattgctatgataaaacactatgacaaaaagt
aatgtaaaatcagggcaggaactcaagcaggaacccaaaggcagaatcaa
aagcaccgggcatgaaggagtgctgcttcctgccactcacaaaaataaac
catgaagacttcccaaaggcagtctactgtgtcccacccgcatacgagct
aaagatgatcaactttggaaactatgtataaaagatggcaggactaactg
tgctttggccatgtcaatacccatataatgaaaaatagcacattataatc
caacttttaaaatcaaagacaaaaaagcaaaccttgaaagcaacaaaaga
cagcatatcacatagagagtcaatcggtctagtagccacctccaatcata
agtcttacagtctaggaaactggagtgacatatttaaagtttctctactt
tcttgccaacatctgttgtcttttgttttgttggttatactcattatcac
tggagtaagatgaaatttcaaagttgttttgattttcctttcctaattgc
taagatgatgtacattttaaaatatttctagtcattttttgattcttcct
tttggactctgttcagacacagatcccccaaccttttactgtttgttttt
gatgctttttttttcccctaacagtactaaacagaatactgtaaa

aattttacaaaataggcttagctaataagactctgctttgtttctataga
gggatttccttaccattgcttaatgatattttaaacattctttttttata
tatagtttttgtttctatttcagttcacatttatttcagtttacttacca
agttttatttttattgagtgataaatagtatcaatgcttagattattagg
tttattacttattagtatcatgatctgtttcttttattttattctttcct
gcctttagagttttagagttttctttagagttttctctgaagaaattcta
gatactggatttagtgaagatgaggtagaactcacctgtattaaatatta
catgggtaatatgtataatatataagtattggtgctttcatggccatgaa
ttggatttatgtacttggtgttgatcacccacttcagctccatcgtgcat
gaaataatttttccaggtgatgagtacttttctttttttggggggtgggt
gggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39636416_39637486
seq2: B6Ng01-320H02.b_78_1139 (reverse)

seq1  TTTACCAGTA-TCTGTTTTAGTAACTGTTAGGGGAAAAAAAAAGCATCAA  49
      |||| ||||| |||| |||||| |||||||||||||||||||||||||||
seq2  TTTA-CAGTATTCTG-TTTAGT-ACTGTTAGGGGAAAAAAAAAGCATCAA  47

seq1  AAAACAAAACAGTAAAAGGGTTGGGGGATCTGTGTCTGAACAGAGTTCCA  99
      |||   ||||||||||| ||||||||||||||||||||||||||| ||||
seq2  AAA--CAAACAGTAAAA-GGTTGGGGGATCTGTGTCTGAACAGAG-TCCA  93

seq1  AAAGGAAGAATCAAAAAATGACTAAGAAATATTTTTAAAATGTACATCAT  149
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  AAAGGAAGAATCAAAAAATGACT-AGAAATA-TTTTAAAATGTACATCAT  141

seq1  CCTTAGCAATTAGGAAAGGAAAATCAAAACAACTTTGAAATTTCATCTTA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTAGCAATTAGGAAAGGAAAATCAAAACAACTTTGAAATTTCATCTTA  190

seq1  CTCCAGTGATAATGAGTATAACCAACAAAACAAAAGACAACAGATGTTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGATAATGAGTATAACCAACAAAACAAAAGACAACAGATGTTGG  240

seq1  CAAGAAAGTAGAGAAACTTTAAATATGTCACTCCAGTTTCCTAGACTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTAGAGAAACTTTAAATATGTCACTCCAGTTTCCTAGACTGTA  290

seq1  AGACTTATGATTGGAGGTGGCTACTAGACCGATTGACTCTCTATGTGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATGATTGGAGGTGGCTACTAGACCGATTGACTCTCTATGTGATA  340

seq1  TGCTGTCTTTTGTTGCTTTCAAGGTTTGCTTTTTTGTCTTTGATTTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTTTGTTGCTTTCAAGGTTTGCTTTTTTGTCTTTGATTTTAAA  390

seq1  AGTTGGATTATAATGTGCTATTTTTCATTATATGGGTATTGACATGGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATTATAATGTGCTATTTTTCATTATATGGGTATTGACATGGCCA  440

seq1  AAGCACAGTTAGTCCTGCCATCTTTTATACATAGTTTCCAAAGTTGATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTTAGTCCTGCCATCTTTTATACATAGTTTCCAAAGTTGATCA  490

seq1  TCTTTAGCTCGTATGCGGGTGGGACACAGTAGACTGCCTTTGGGAAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGCTCGTATGCGGGTGGGACACAGTAGACTGCCTTTGGGAAGTCT  540

seq1  TCATGGTTTATTTTTGTGAGTGGCAGGAAGCAGCACTCCTTCATGCCCGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTTATTTTTGTGAGTGGCAGGAAGCAGCACTCCTTCATGCCCGG  590

seq1  TGCTTTTGATTCTGCCTTTGGGTTCCTGCTTGAGTTCCTGCCCTGATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGATTCTGCCTTTGGGTTCCTGCTTGAGTTCCTGCCCTGATTTT  640

seq1  ACATTACTTTTTGTCATAGTGTTTTATCATAGCAATAGAAAGGTAGTGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTTTTTGTCATAGTGTTTTATCATAGCAATAGAAAGGTAGTGCG  690

seq1  AAAGCGGGTTCAGAATTGTTGGTTATTGCTATCACAGACGTGACCTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGGTTCAGAATTGTTGGTTATTGCTATCACAGACGTGACCTTGTT  740

seq1  GTTTTAGGGCGTGTTTGAAACTTTGGGTGGAATAGTCACCAGAGACCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGGCGTGTTTGAAACTTTGGGTGGAATAGTCACCAGAGACCAAA  790

seq1  GCTCAGTGACCCGTTCTTTGGGAGCTTGGGAGGTTACGAATGCTTAAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGACCCGTTCTTTGGGAGCTTGGGAGGTTACGAATGCTTAAAAC  840

seq1  AGTGCAGGTAATAAAAATCTGGCTTGTGATGTTTCAGAAGGAAGTTGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGTAATAAAAATCTGGCTTGTGATGTTTCAGAAGGAAGTTGGAG  890

seq1  AATCTCTCAAAGATTCTATCAGGCTGTGTTAAGAATATGTAGCTTCAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCAAAGATTCTATCAGGCTGTGTTAAGAATATGTAGCTTCAATA  940

seq1  AGCACACAGAGTTGTAATCTATAGGGACTAAGGCTGATTCTCATGCTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACAGAGTTGTAATCTATAGGGACTAAGGCTGATTCTCATGCTGGC  990

seq1  ACCTTGGAAATGTTTAAAAGGTTTTGTTGCCATGAGAGATGCAGAGCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGAAATGTTTAAAAGGTTTTGTTGCCATGAGAGATGCAGAGCTGA  1040

seq1  AGTGGTCATGAACAGAAGCTAA  1071
      ||||||||||||||||||||||
seq2  AGTGGTCATGAACAGAAGCTAA  1062


seq1: chrX_39510120_39510631
seq2: B6Ng01-320H02.g_65_576

seq1  GAATTCAATTTTACAAAATAGGCTTAGCTAATAAGACTCTGCTTTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTTACAAAATAGGCTTAGCTAATAAGACTCTGCTTTGTTTC  50

seq1  TATAGAGGGATTTCCTTACCATTGCTTAATGATATTTTAAACATTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGGGATTTCCTTACCATTGCTTAATGATATTTTAAACATTCTTTT  100

seq1  TTTATATATAGTTTTTGTTTCTATTTCAGTTCACATTTATTTCAGTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATAGTTTTTGTTTCTATTTCAGTTCACATTTATTTCAGTTTAC  150

seq1  TTACCAAGTTTTATTTTTATTGAGTGATAAATAGTATCAATGCTTAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGTTTTATTTTTATTGAGTGATAAATAGTATCAATGCTTAGATT  200

seq1  ATTAGGTTTATTACTTATTAGTATCATGATCTGTTTCTTTTATTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTTTATTACTTATTAGTATCATGATCTGTTTCTTTTATTTTATTC  250

seq1  TTTCCTGCCTTTAGAGTTTTAGAGTTTTCTTTAGAGTTTTCTCTGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCTTTAGAGTTTTAGAGTTTTCTTTAGAGTTTTCTCTGAAGAA  300

seq1  ATTCTAGATACTGGATTTAGTGAAGATGAGGTAGAACTCACCTGTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATACTGGATTTAGTGAAGATGAGGTAGAACTCACCTGTATTAA  350

seq1  ATATTACATGGGTAATATGTATAATATATAAGTATTGGTGCTTTCATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACATGGGTAATATGTATAATATATAAGTATTGGTGCTTTCATGGC  400

seq1  CATGAATTGGATTTATGTACTTGGTGTTGATCACCCACTTCAGCTCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTGGATTTATGTACTTGGTGTTGATCACCCACTTCAGCTCCATC  450

seq1  GTGCATGAAATAATTTTTCCAGGTGATGAGTACTTTTCTTTTTTTGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGAAATAATTTTTCCAGGTGATGAGTACTTTTCTTTTTTTGGGGG  500

seq1  GTGGGTGGGTGG  512
      ||||||||||||
seq2  GTGGGTGGGTGG  512


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