BAC Information

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BAC

Clone NameB6Ng01-320O01
ChromosomeX (Build37)
Map Location 39,696,377 - 39,697,430
singlet/doubletsinglet
Overlap genenone
Upstream geneGria3, LOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2
Downstream geneLOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320O01.bB6Ng01-320O01.g
ACCGA110134GA110135
length8191,058
definitionB6Ng01-320O01.b B6Ng01-320O01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaattgttctgagattcatagtgagattatgcttcaaaatgga
tcatcatcatcagataaagaaattattaaaagccctggcatagcctcaca
agagacagttatataagggtcctttcagcaaaatcttgctggtgtatgca
atggtgtcagcatttggaggctgattatgggatggatccccgggtatggc
agtctctagatggtccatcctttggtctcagctccaaacttttgtctctg
taactccttccatgggtgttttgttcccaattctaagaaggggcaaagtg
tccacactttggtcttcgttcttcttgagtttcatgtgttttgcaaattg
tatcttatatcttgggtattctaagtttctgggctaatatccacttatca
gtgagtacatatcatgtgagttcttttgtgatttggttacctcactcagg
atgatgccctccaggtccatccatttgcctaggaatttcataaattcatt
ctttttaatagctgtgtagtactccattgtgtaaatgtaccacattttct
gtgtccattcctctgttgaagggcatctgggttctttccagtttctgggt
attataaataaggctgctatacccaaggagctagagggatctgcaaccct
ataggtggaacaacaatatgaactaaccagtaccccccagagcttgtgtc
tctagctgcatatgtatcagaagatggccttgtcggccatcagtggaaag
agaggcccattggtcgtgcaaactttatatgcctcagtacaggggaattc
cagggccaagaagtgggag
gaattccacggaatctccgtgtcacctctagtttttacttggaatggagt
gttattgtgtggtttgtgctgtgggcgtgatggttccaaaccaaagggca
ccagcaggatgcagtctgatgatcagggacagaggacttggagtgatgta
gcagctgtgcacattgatgggttcctaactcccagcccttagattttccc
aggctgtttaagttcatgatcccagggtacttgcatgtccaccccctacc
acacaccatctcattcaggtctcccccctcccccacagggtcggctataa
agcgggtggaagattttcagtgcttctcagatctttcttctggccctctt
gacatctaaggactgaaaagaactcggggtgccttcctaggcaggcttcc
ggaggccacatccttctgtcttccggggattgggggcaggagggcggctg
aacgctggcagtcattgtttgggtattgactcaaaggagtcggagctaca
aggcacaggaaaaaggatgagctcatgacagctaaatgaaaagattctta
tcttggaaaccgcggtttcttatgcaaaacagggggtggcaatgtgcccc
acagagtacattcaacaactgggatttcaaactagaagctattttgcata
cctacgggagcagtaatgggccagattgttcattaattaaaaagagggga
ggaaggcattgaaaaacccgcgctcacacttgctgcagaactgaaatcat
tctttttctcttctcccagtcccagttgatcagctgagagacaaatgctt
tttccactttagccacctctggagaaaagaaggccgaggccgagggaagg
gttgggtagggagaaactagaagtcacagataaatagaacagacttgatc
tctcagccattttctattttggtgttgaaatgtattacacgggagtcatt
ggagttttgttgctttctttttccacccaggagattaacctttccagttc
tgtttgattctgtatgaaagaacctctggaaaaaaaaattctccacagga
gagaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_39696377_39697430
seq2: B6Ng01-320O01.g_67_1124

seq1  GAATTCCACGGAATCTCCGTGTCACCTCTAGTTTTTACTTGGAATGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGAATCTCCGTGTCACCTCTAGTTTTTACTTGGAATGGAGT  50

seq1  GTTATTGTGTGGTTTGTGCTGTGGGCGTGATGGTTCCAAACCAAAGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTGTGGTTTGTGCTGTGGGCGTGATGGTTCCAAACCAAAGGGCA  100

seq1  CCAGCAGGATGCAGTCTGATGATCAGGGACAGAGGACTTGGAGTGATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGATGCAGTCTGATGATCAGGGACAGAGGACTTGGAGTGATGTA  150

seq1  GCAGCTGTGCACATTGATGGGTTCCTAACTCCCAGCCCTTAGATTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTGCACATTGATGGGTTCCTAACTCCCAGCCCTTAGATTTTCCC  200

seq1  AGGCTGTTTAAGTTCATGATCCCAGGGTACTTGCATGTCCACCCCCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTAAGTTCATGATCCCAGGGTACTTGCATGTCCACCCCCTACC  250

seq1  ACACACCATCTCATTCAGGTCTCCCCCCTCCCCCACAGGGTCGGCTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATCTCATTCAGGTCTCCCCCCTCCCCCACAGGGTCGGCTATAA  300

seq1  AGCGGGTGGAAGATTTTCAGTGCTTCTCAGATCTTTCTTCTGGCCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGTGGAAGATTTTCAGTGCTTCTCAGATCTTTCTTCTGGCCCTCTT  350

seq1  GACATCTAAGGACTGAAAAGAACTCGGGGTGCCTTCCTAGGCAGGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTAAGGACTGAAAAGAACTCGGGGTGCCTTCCTAGGCAGGCTTCC  400

seq1  GGAGGCCACATCCTTCTGTCTTCCGGGGATTGGGGGCAGGAGGGCGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCACATCCTTCTGTCTTCCGGGGATTGGGGGCAGGAGGGCGGCTG  450

seq1  AACGCTGGCAGTCATTGTTTGGGTATTGACTCAAAGGAGTCGGAGCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGGCAGTCATTGTTTGGGTATTGACTCAAAGGAGTCGGAGCTACA  500

seq1  AGGCACAGGAAAAAGGATGAGCTCATGACAGCTAAATGAAAAGATTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGAAAAAGGATGAGCTCATGACAGCTAAATGAAAAGATTCTTA  550

seq1  TCTTGGAAACCGCGGTTTCTTATGCAAAACAGGGGGTGGCAATGTGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAACCGCGGTTTCTTATGCAAAACAGGGGGTGGCAATGTGCCCC  600

seq1  ACAGAGTACATTCAACAACTGGGATTTCAAACTAGAAGCTATTTTGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTACATTCAACAACTGGGATTTCAAACTAGAAGCTATTTTGCATA  650

seq1  CCTACGGGAGCAGTAATGGGCCAGATTGTTCATTAATTAAAAAGAGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGGGAGCAGTAATGGGCCAGATTGTTCATTAATTAAAAAGAGGGGA  700

seq1  GGAAGGCATTGAAAAACCCGCGCTCACACTTGCTGCAGAACTGAAATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCATTGAAAAACCCGCGCTCACACTTGCTGCAGAACTGAAATCAT  750

seq1  TCTTTTTCTCTTCTCCCAGTCCCAGTTGATCAGCTGAGAGACAAATGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTCTTCTCCCAGTCCCAGTTGATCAGCTGAGAGACAAATGCTT  800

seq1  TTTCCACTTTAGCCACCTCTGGAGAAAAGAAGGCCGAGGCCGAGGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTTTAGCCACCTCTGGAGAAAAGAAGGCCGAGGCCGAGGGAAGG  850

seq1  GTTGGGTAGGGAGAAACTAGAAGTCACAGATAAATAGAACAGACTTGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTAGGGAGAAACTAGAAGTCACAGATAAATAGAACAGACTTGATC  900

seq1  TCTCAGCCA-TTTCTA-TTTGGTGTTGAAATGTATTACACGGAAGTCA-T  947
      ||||||||| |||||| ||||||||||||||||||||||||| ||||| |
seq2  TCTCAGCCATTTTCTATTTTGGTGTTGAAATGTATTACACGGGAGTCATT  950

seq1  GGAGTTTTGTTGCTTTCTTTTTCCACCCAGGAGATTTACC-TTCCAGTTC  996
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  GGAGTTTTGTTGCTTTCTTTTTCCACCCAGGAGATTAACCTTTCCAGTTC  1000

seq1  TGTTTGATTCTGTATGAAAGAA-CTCTGGAAAAAAAAAATTCTTCACAGG  1045
      |||||||||||||||||||||| |||||| ||||||||||||| ||||||
seq2  TGTTTGATTCTGTATGAAAGAACCTCTGG-AAAAAAAAATTCTCCACAGG  1049

seq1  AGAGAAAGG  1054
      |||||||||
seq2  AGAGAAAGG  1058