BAC Information

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BAC

Clone NameB6Ng01-322C21
ChromosomeX (Build37)
Map Location 45,830,019 - 45,956,106
singlet/doubletdoublet
Overlap geneAifm1, Rab33a, Suhw3
Upstream geneLOC100040133, LOC100040145, EG624187, Smarca1, LOC676253, Ocrl, LOC270596, LOC665672, Apln, Xpnpep2, 1200013B08Rik, Zdhhc9, Utp14a, LOC637576, Bcorl1, Elf4
Downstream geneSlc25a14, Gpr119, Rbmx2, LOC665752, Gm595, EG637758, LOC100040295, Enox2, 1100001E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322C21.bB6Ng01-322C21.g
ACCGA111088GA111089
length1,2051,135
definitionB6Ng01-322C21.b B6Ng01-322C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,830,019 - 45,831,219)(45,954,977 - 45,956,106)
sequence
gaattcagggttttcttcttttctgagacagggtctcatgtagatcaggc
tgaccttgaacttttttgtttgtttgtttgttgtttgtttttccagacag
ggtttctctgtgtagctctggctgtcctggaagtcactctgtagatcagg
ctggcctggaactcagaaatccacctgcctctgcctcccaagtgctggga
ataaaggcgtgcgccaccacacccagcttctgaccttgaatttacagata
atatccttcttaaaaagtgatgtgtccatgaaaaatagccagcaaaaaga
gctggttaaataactcaaaccaaggtcgtgaaataaggccaaggagctag
tgaaagagacacctgtaggaggaacgcccactccgagagtgggacctcct
gtctgaggcagacctggcatccacggcagacagctggcgtgagagttagc
ttaagaattccttagcccaattctttacttgccaggatcccgggaaggca
gcaggccctacgctgaggctctcacctggtccttgagattattatgaaac
aggcaatttaaacaacaaaaaatcaggtttgcttcatcgcctggcttttc
tcagccccgagagacaaactagagtcactgagcaggacgttagccactgt
ttaggatggataggatacctactatccatgagtctctgctttgaccgatc
tcagagcagcaaagagtggaaagtctgggtttggttactttttataaaaa
ggcacactacagaggcttgtgaatggcagcttcctctggcccgtccagga
aaacccaggcctactatttctcaccattcttcctagagaagtagttgggc
ttccttacctgactgctctgtggcagattttgggttgtcttgtgcagttg
cttttgcaaaacaccaactgtgggcaaactactatccaccagaccaatag
cttcatagccgacatcaggacccaaatcactcctgtggaaacaaagagga
catttgtcaagggaccattaggaatggcaaacagattacttgttaccagg
aacatctgagggacatgcatggagagaggattaccctcagacagctgtgg
ctttcctctcagatgagctggcttataaccatcataccatatataataac
aattaactctgaattttgattttatgccggataatacatatggcgcgggt
ggtat
gaattcaaccccaaaacacatgaggtagaaggaaaaaaccatgagtttta
cacacacacacacacacacacacacacacacgtaaaatgtaataaaaaat
tttaattgaaaaaatacttcaatagttcaatattcctccaggaaagataa
aataatagctaggaaatacatgaagttatgcccaacaatattaatcctgt
cgtttagatgttggtgtgttccccaagggcctaagtatttgaaatttagc
ctttaccataacaatgtcaagcagtaaggggaactaaacaggtagggcct
cagacgtatttatatcattgaagtgctggcctcagaagaaactgatgttg
atcacttttgctttgattagttctcatgagagaatttcataaaagaaaaa
gcttaactatactccatatgctctagctttctatcttgtcctgtgactcc
tcttgctcacactccctccattctactatctaccaaaagggactgactct
tctgaagctcttattccaagataactcgggattcaaaacagggacagaga
gtgagtgataaacacagcaatctttatctctttcacaagtccttctgagg
gaggagaaagtctccctcccggctgaataggggctgctttcttttctttc
tttttttattagatattttctttatttacatttcaaatgttatccccttt
ccttatttcccctccgaaaacccccctattccatccccccattcccctgc
tcactaacccacccactcctgcttccttgtcctggcattcccctacacaa
aacaacccagagattcagaatagctaagatcaaaaactcagtgacagcag
atgctggtgaggatgtggagaaagaggaacactccttcattggtgttggg
attaaaggtggtacaaccactctggaaatcagtttggcagttccttagaa
aattggacctgaggacccagctataccagtctgggcatatatcaaaaaga
tgctccaacatataacaggacacatgcttccattatgtcataacagctta
tttataatagccagaagctgggaaagaaccagatgtccctcaacagaaga
atggatacaggaaattggggttacttacacaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_45830019_45831219
seq2: B6Ng01-322C21.b_45_1249

seq1  GAATTCAGGGTTTTCTTCTTTTCTGAGACAGGGTCTCATGTAGATCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTTTTCTTCTTTTCTGAGACAGGGTCTCATGTAGATCAGGC  50

seq1  TGACCTTGAACTTTTTTGTTTGTTTGTTTGTTGTTTGTTTTTCCAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGAACTTTTTTGTTTGTTTGTTTGTTGTTTGTTTTTCCAGACAG  100

seq1  GGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAAGTCACTCTGTAGATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAAGTCACTCTGTAGATCAGG  150

seq1  CTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGA  200

seq1  ATAAAGGCGTGCGCCACCACACCCAGCTTCTGACCTTGAATTTACAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCGTGCGCCACCACACCCAGCTTCTGACCTTGAATTTACAGATA  250

seq1  ATATCCTTCTTAAAAAGTGATGTGTCCATGAAAAATAGCCAGCAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTCTTAAAAAGTGATGTGTCCATGAAAAATAGCCAGCAAAAAGA  300

seq1  GCTGGTTAAATAACTCAAACCAAGGTCGTGAAATAAGGCCAAGGAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTAAATAACTCAAACCAAGGTCGTGAAATAAGGCCAAGGAGCTAG  350

seq1  TGAAAGAGACACCTGTAGGAGGAACGCCCACTCCGAGAGTGGGACCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGACACCTGTAGGAGGAACGCCCACTCCGAGAGTGGGACCTCCT  400

seq1  GTCTGAGGCAGACCTGGCATCCACGGCAGACAGCTGGCGTGAGAGTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGCAGACCTGGCATCCACGGCAGACAGCTGGCGTGAGAGTTAGC  450

seq1  TTAAGAATTCCTTAGCCCAATTCTTTACTTGCCAGGATCCCGGGAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTCCTTAGCCCAATTCTTTACTTGCCAGGATCCCGGGAAGGCA  500

seq1  GCAGGCCCTACGCTGAGGCTCTCACCTGGTCCTTGAGATTATTATGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCCTACGCTGAGGCTCTCACCTGGTCCTTGAGATTATTATGAAAC  550

seq1  AGGCAATTTAAACAACAAAAAATCAGGTTTGCTTCATCGCCTGGCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTTAAACAACAAAAAATCAGGTTTGCTTCATCGCCTGGCTTTTC  600

seq1  TCAGCCCCGAGAGACAAACTAGAGTCACTGAGCAGGACGTTAGCCACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCGAGAGACAAACTAGAGTCACTGAGCAGGACGTTAGCCACTGT  650

seq1  TTAGGATGGATAGGATACCTACTATCCATGAGTCTCTGCTTTGACCGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGGATAGGATACCTACTATCCATGAGTCTCTGCTTTGACCGATC  700

seq1  TCAGAGCAGCAAAGAGTGGAAAGTCTGGGTTTGGTTACTTTTTATAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAGCAAAGAGTGGAAAGTCTGGGTTTGGTTACTTTTTATAAAAA  750

seq1  GGCACACTACAGAGGCTTGTGAATGGCAGCTTCCTCTGGCCCGTCCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTACAGAGGCTTGTGAATGGCAGCTTCCTCTGGCCCGTCCAGGA  800

seq1  AAACCCAGGCCTACTATTTCTCACCATTCTTCCTAGAGAAGTAGTTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGGCCTACTATTTCTCACCATTCTTCCTAGAGAAGTAGTTGGGC  850

seq1  TTCCTTACCTGACTGCTCTGTGGCAGATTTTGGGTTGTCTTGTGCAGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACCTGACTGCTCTGTGGCAGATTTTGGGTTGTCTTGTGCAGTTG  900

seq1  CTTTTGCAAAAACACCAACTGTGGGCAAACTACTATCCACCAGACCAATA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGC-AAAACACCAACTGTGGGCAAACTACTATCCACCAGACCAATA  949

seq1  GCTTCATAGCCGACATCAGGACCCAAATCACTCCTGTGGAAACAAAGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGCCGACATCAGGACCCAAATCACTCCTGTGGAAACAAAGAGG  999

seq1  ACATTTTGTCAAAGGACCATAAGGAATGGCAAACAGATTTACTGTTACCA  1050
      ||| |||||||| ||||||| ||||||||||||||||||   ||||||||
seq2  ACA-TTTGTCAAGGGACCATTAGGAATGGCAAACAGATTACTTGTTACCA  1048

seq1  GG-ACATCTGA-GGACATGCATGAGAGA-AGGATTA-CCTCAGACAGCTG  1096
      || |||||||| ||||||||||| |||| ||||||| |||||||||||||
seq2  GGAACATCTGAGGGACATGCATG-GAGAGAGGATTACCCTCAGACAGCTG  1097

seq1  TGCTTTTCCTC---AAGTAGCTG--CTATACACATCATACC-CATATAAT  1140
      ||  |||||||    |  |||||   ||||  |||||||||  |||||||
seq2  TGGCTTTCCTCTCAGATGAGCTGGCTTATAACCATCATACCATATATAAT  1147

seq1  AACAATTTAAACTTCCTGAATTTTGTGATTTTTTTATCCC--ATAATACA  1188
      |||||||  ||||  ||||||||||      |||||| ||  ||||||||
seq2  AACAATT--AACT--CTGAATTTTG-----ATTTTATGCCGGATAATACA  1188

seq1  TATGGC----GTGGTAT  1201
      ||||||    |||||||
seq2  TATGGCGCGGGTGGTAT  1205

seq1: chrX_45954977_45956106
seq2: B6Ng01-322C21.g_77_1202 (reverse)

seq1  CCATTGTGTAAATGTACCCCATTTTCTGTATCCATTCTTCTGTTGAGGGA  50
      ||||||||||| |   ||| |||| |||||||||||||||||||||||||
seq2  CCATTGTGTAAGTAACCCCAATTTCCTGTATCCATTCTTCTGTTGAGGGA  50

seq1  CATCTGGGTTCTTT-CCAGCTTCTGGCTATTATAAATAAGGCTGTTATGA  99
      ||||| |||||||| |||||||||||||||||||||||| ||||||||| 
seq2  CATCT-GGTTCTTTCCCAGCTTCTGGCTATTATAAATAA-GCTGTTATG-  97

seq1  ACATAATGG-AGCATGTGTCCTTGTTATATGTTGGAGCATCTTTTTGATA  148
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  ACATAATGGAAGCATGTGTCC-TGTTATATGTTGGAGCATCTTTTTGATA  146

seq1  TATGCCCAGGACTGGTATAGCTGGGTCCTCAGGTCCAATTTTCTAAGGAA  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCA-GACTGGTATAGCTGGGTCCTCAGGTCCAATTTTCTAAGGAA  195

seq1  CTGCCAAACTGATTTCCAGAGTGGTTGTACCACCTTTAATCCCAACACCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAACTGATTTCCAGAGTGGTTGTACCACCTTTAATCCCAACACCA  245

seq1  ATGAAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGAAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCA-  294

seq1  CTGAGTTTTTGATCTTAGCTATTCTGAATCTCTGGGTTGTTTTGTGTAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTTTGATCTTAGCTATTCTGAATCTCTGGGTTGTTTTGTGTAGG  344

seq1  GGAATGCCAGGACAAGGAAGCAGGAGTGGGTGGGTTAGTGAGCAGGGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCCAGGACAAGGAAGCAGGAGTGGGTGGGTTAGTGAGCAGGGGAA  394

seq1  TGGGGGGATGGAATAGGGGGGTTTTCGGAGGGGAAATAAGGAAAGGGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGATGGAATAGGGGGGTTTTCGGAGGGGAAATAAGGAAAGGGGAT  444

seq1  AACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAAGAAAGAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAAGAAAGAAAA  494

seq1  GAAAGCAGCCCCTATTCAGCCGGGAGGGAGACTTTCTCCTCCCTCAGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCCCCTATTCAGCCGGGAGGGAGACTTTCTCCTCCCTCAGAAG  544

seq1  GACTTGTGAAAGAGATAAAGATTGCTGTGTTTATCACTCACTCTCTGTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGAAAGAGATAAAGATTGCTGTGTTTATCACTCACTCTCTGTCC  594

seq1  CTGTTTTGAATCCCGAGTTATCTTGGAATAAGAGCTTCAGAAGAGTCAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGAATCCCGAGTTATCTTGGAATAAGAGCTTCAGAAGAGTCAGT  644

seq1  CCCTTTTGGTAGATAGTAGAATGGAGGGAGTGTGAGCAAGAGGAGTCACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGGTAGATAGTAGAATGGAGGGAGTGTGAGCAAGAGGAGTCACA  694

seq1  GGACAAGATAGAAAGCTAGAGCATATGGAGTATAGTTAAGCTTTTTCTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGATAGAAAGCTAGAGCATATGGAGTATAGTTAAGCTTTTTCTTT  744

seq1  TATGAAATTCTCTCATGAGAACTAATCAAAGCAAAAGTGATCAACATCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATTCTCTCATGAGAACTAATCAAAGCAAAAGTGATCAACATCAG  794

seq1  TTTCTTCTGAGGCCAGCACTTCAATGATATAAATACGTCTGAGGCCCTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGAGGCCAGCACTTCAATGATATAAATACGTCTGAGGCCCTAC  844

seq1  CTGTTTAGTTCCCCTTACTGCTTGACATTGTTATGGTAAAGGCTAAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGTTCCCCTTACTGCTTGACATTGTTATGGTAAAGGCTAAATTT  894

seq1  CAAATACTTAGGCCCTTGGGGAACACACCAACATCTAAACGACAGGATTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTAGGCCCTTGGGGAACACACCAACATCTAAACGACAGGATTA  944

seq1  ATATTGTTGGGCATAACTTCATGTATTTCCTAGCTATTATTTTATCTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTGGGCATAACTTCATGTATTTCCTAGCTATTATTTTATCTTTC  994

seq1  CTGGAGGAATATTGAACTATTGAAGTATTTTTTCAATTAAAATTTTTTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAATATTGAACTATTGAAGTATTTTTTCAATTAAAATTTTTTAT  1044

seq1  TACATTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAACTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAACTCA  1094

seq1  TGGTTTTTTCCTTCTACCTCATGTGTTTTGGG  1130
      ||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTCCTTCTACCTCATGTGTTTTGGG  1126