BAC Information

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BAC

Clone NameB6Ng01-323O15
ChromosomeX (Build37)
Map Location 40,526,872 - 40,669,180
singlet/doubletdoublet
Overlap geneOdz1
Upstream geneStag2, LOC100039899, Sh2d1a
Downstream geneGm362, LOC100039977, LOC100039987, LOC637141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O15.bB6Ng01-323O15.g
ACCGA112365GA112366
length986208
definitionB6Ng01-323O15.b B6Ng01-323O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,668,639 - 40,669,180)(40,526,872 - 40,527,022)
sequence
gaattctcacactgccaaagttcaactgccttacatgatctttttaaatc
ttcaaaattagtatcatgttgatgactcttacaagttaactgcagccttg
gtcccccactggaccagggctctgtgtgctcacctgagggaacaaatcct
agaagatgtcaccttgatgatcccagccctagctaaccaacattgatttt
tccagttacacagaggcttcacttcaaagttgcgggtcccctgttaatca
cagctgattcttcagcctcatctcaccagaaactacattcttaatttaaa
tatcacacaaatggccctgatatagtttttttccattgtctgcttgtttt
tcaacatccctagcttcttaagctcccacagaatagaataccagtctctg
aactaagctctgaacattcagtagtttttcagccctagattccataatgc
tccacaactctgctaaagcagaatggtcagaatcatcacggaaattaggg
cactcaaacaagaagagttctccttatgggctttctcaactcagtttctt
acacatctcatgcttttctgtcaacgagtagtaccacccacagttgcata
ggcacttttgtatcaattagtaaccaagaaaattctctagaacaggacca
cagccaaatagaatggaggcaattctgcagttaacattccctcttcctca
gtgtgtcaagttgccaaaaagtaaataaactatgacattcagacatatat
ttagtttctagaaccttcgtattatattgcaaggtttattatattattat
ctgtagctcaagatcaagaactgagatcctcttctcttaaaggtcatttg
tcacatcatgcagtgactgagtttgcatattgagttcttatcatcattct
accatcaattatctgtgttttagttcagactcagaagtcaaatcttttaa
tttctttattttttcagtcacatttgtctggatctc
actgtgaaatttagctgctgctatattctgacagaatgtcttgctttttg
tctcattgcctggaacattatgaagacaccataaacatcttttattatct
ttattgttttgttaggatagattccaagatcatgaatcattgagccaaaa
gtcatgaatatattgttgattggaaaattataatttacacagtcatcagc
aatgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_40668639_40669180
seq2: B6Ng01-323O15.b_487_1029 (reverse)

seq1  GAGATCCAGACAAATGTGACTGAAAAAATAAAGAAATTAAAAGATTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCAGACAAATGTGACTGAAAAAATAAAGAAATTAAAAGATTTGAC  50

seq1  TTCTGAGTCTGAACTAAAACACAGATAATTGATGGTAGAATGATGATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCTGAACTAAAACACAGATAATTGATGGTAGAATGATGATAAG  100

seq1  AACTCAATATGCAAACTCAGTCACTGCATGATGTGACAAATGACCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATATGCAAACTCAGTCACTGCATGATGTGACAAATGACCTTTAA  150

seq1  GAGAAGAGGATCTCAGTTCTTGATCTTGAGCTACAGATAATAATATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGATCTCAGTTCTTGATCTTGAGCTACAGATAATAATATAATA  200

seq1  AACCTTGCAATATAATACGAAGGTTCTAGAAACT-AATATATGTCTGAAT  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACCTTGCAATATAATACGAAGGTTCTAGAAACTAAATATATGTCTGAAT  250

seq1  GTCATAGTTTATTTACTTTTTGGCAACTTGACACACTGAGGAAGAGGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTTTATTTACTTTTTGGCAACTTGACACACTGAGGAAGAGGGAA  300

seq1  TGTTAACTGCAGAATTGCCTCCATTCTATTTGGCTGTGGTCCTGTTCTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTGCAGAATTGCCTCCATTCTATTTGGCTGTGGTCCTGTTCTAG  350

seq1  AGAATTTTCTTGGTTACTAATTGATACAAAAGTGCCTATGCAACTGTGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTCTTGGTTACTAATTGATACAAAAGTGCCTATGCAACTGTGGG  400

seq1  TGGTACTACTCGTTGACAGAAAAGCATGAGATGTGTAAGAAACTGAGTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTACTCGTTGACAGAAAAGCATGAGATGTGTAAGAAACTGAGTTG  450

seq1  AGAAAGCCCATAAGGAGAACTCTTCTTGTTTGAGTGCCCTAATTTCCGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCCATAAGGAGAACTCTTCTTGTTTGAGTGCCCTAATTTCCGTG  500

seq1  ATGATTCTGACCATTCTGCTTTAGCAGAGTTGTGGAGCATTAT  542
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTGACCATTCTGCTTTAGCAGAGTTGTGGAGCATTAT  543

seq1: chrX_40526872_40527022
seq2: B6Ng01-323O15.g_132_282

seq1  GCCTGGAACATTATGAAGACACCATAAACATCTTTTATTATCTTTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAACATTATGAAGACACCATAAACATCTTTTATTATCTTTATTGT  50

seq1  TTTGTTAGGATAGATTCCAAGACCATGAATCAATGAGCCAAAAGTCTTGA  100
      |||||||||||||||||||||| ||||||||| ||||||||||||| |||
seq2  TTTGTTAGGATAGATTCCAAGATCATGAATCATTGAGCCAAAAGTCATGA  100

seq1  ATATATTGTTGCTTGGAAAATTATAATATACACAGTCATTAGCAATGTGT  150
      ||||||||||| ||||||||||||||| ||||||||||| |||||||| |
seq2  ATATATTGTTGATTGGAAAATTATAATTTACACAGTCATCAGCAATGTAT  150

seq1  G  151
      |
seq2  G  151