BAC Information

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BAC

Clone NameB6Ng01-326A11
ChromosomeX (Build37)
Map Location 158,531,776 - 158,663,156
singlet/doubletdoublet
Overlap geneNhs
Upstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326A11.bB6Ng01-326A11.g
ACCGA113939GA113940
length1,2041,087
definitionB6Ng01-326A11.b B6Ng01-326A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,662,127 - 158,663,156)(158,531,776 - 158,532,864)
sequence
gaattctcgcattttgatatctgatcattcttgcttgcctttaggaaaaa
aatcataatcatcaacaacaacaataaaacaaaacaacctgataagtaga
tttagtaagaatttagtaattttcgagtcactctattcatcacttgtaag
tcaatattgtctttgactagtttggagttgagtctaaccttctctcccat
taagtcttgacatctgtcatgatactcctgagttgtctttacaatgttat
taacatggttaaatttttaaatcatttaggagtgaatgttataaccagtt
agagggagaattcaaaaaacagacacatgtatagactgggaatgttgaga
taaataggaaagtagaagcaacagtggcctgctcttacatgataggaaag
ggaagtcaactggtcagaattcccatgtcttcattattaatcagatttat
ttgcaaatccacttggaataatcaatggcgatagaaagctagagttatat
aattcagagagatgggtaccaaactgttgctgattttataaaagttttat
tggaacccattcatttatgaattgtcggtgtctattttccctgagttaag
ttgaacaacactgaacataaaggttgtggagcctaaaatatttcctgtct
ggtctttcacagaaaatgtttctcaacctccatgctccaggcactgcata
gttttccaccgaataacacttttcctgcttctaatgaggtgtatactgct
gttacaagtaaaagaaggaaaccagtaagtggtagggctaaagctctaac
acaggttaatctgatccaattattagtgtggtgatcaggattcggtttag
cttctcctagaaacaaaaacaatgaaacaaaacaaaactctggaactaca
gtccacactgagcatggcatctctttcaaattatctccatcattaaagag
aaagtgttgtagctcaatagatgacctgtggttcatgcatgaagttcagg
ataggaaagacaaatgctttgatacctcaggagccattttacctgcattg
cttgatctcaaactactttataaagtaactgagttaaattatagtacatt
tgtacaagacagactatagtgtacattcctcaacaggactagccagaaag
agaaatgattcatttgtagcactttcttgtgaattgttcttagaccattc
aata

gaattccaaagatggaatgaacacctgtatgaaaggactcagaattataa
ctggtatataacagacatccattaaaggtttggagttttgcagttcatat
atgagtgtttttagggtctggggatgtagctcactggagtgtgtacttgc
ttagcatgtactgttttccaagtatgcactggttgccagccagcactgcg
taagccatgcactgcgccacccacttatgatcctagcattaagaaggcag
gcaaaaagattcaggaacaagaagttcaaggtcattcttggctgtacaac
aagttcaagacaagctttagctatagagaattcaagatcagtctgggtta
catttagacaaccccatctcaaaaacaaaaaggttttaattgtgcttgcc
cagaaaggtggaggtagtggtggtagaaaataggaattagataaggaact
ttagacaatcacctccctggaaaatcaattttatttagatagtggataga
taagagctcagactctggaatcagcattttgatgctggccaagtgacttc
tttgtccctgtgccagataatttgtctataaaaggcaatagcaatgctag
ctttcagagttagtaaggattaaatgaactaatgcatggaaaaggcttag
agtggcatccgacacacaggaaagtgtcaatcagtgttagccacagctgg
gaggaagcagagggaaagtaatgaaaagtgcaaaacttataaaagacttg
aggtctgctactactctttcagtgttatccccactggttctggagctctg
ctattctcacttacagaaagtaagaatcctggtacaccacgtcccagcgt
aaaatggctcttgcagggtggcagagcctgaagttcacaatccaaaggca
tccaaggagctatggttccaattatgaagcaaagctgtcccaaatactat
tccctgcagcttggcaggaaaatatgtttgcaacaaaaccagaccatgcc
cccattctgtcttgggtctcagtccaaaacattttgtaaatcgttctgga
acttggggagaggcggtgattgcagcagcatagcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158662127_158663156
seq2: B6Ng01-326A11.b_246_1249 (reverse)

seq1  TATTGAATAGGTACTAAAGAACAAATATTCACAAGAAAAGTGCTACAAAA  50
      |||||||| ||| || |||||||   ||||||||| |||||||||| |||
seq2  TATTGAAT-GGT-CT-AAGAACA---ATTCACAAG-AAAGTGCTAC-AAA  42

seq1  TGAAATCATTTTCTCTTTCTGCCTAAGTTCCTTGTTTGAGG-ATGTACAA  99
      || ||||| |||||||||||| |||   ||||   |||||| |||||| |
seq2  TG-AATCA-TTTCTCTTTCTGGCTA--GTCCT--GTTGAGGAATGTAC-A  85

seq1  CTATAGTCCTGTCTTGTACAAATGTACTATAATTTAACTCAGTTACTTTT  149
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  CTATAGT-CTGTCTTGTACAAATGTACTATAATTTAACTCAGTTAC-TTT  133

seq1  ATAAAGTTAGTTTGAGATCAAGCAATGCAGGTAAAATTGGCCTCCTTGAG  199
      |||||| ||||||||||||||||||||||||||||||  | |||| ||||
seq2  ATAAAG-TAGTTTGAGATCAAGCAATGCAGGTAAAAT--GGCTCC-TGAG  179

seq1  TTATCAAAGCATTTGTCTTTCCTAATCCTGAACCTTCATGCATGAACCCA  249
       |||||||||||||||||||||| |||||||| ||||||||||||| |||
seq2  GTATCAAAGCATTTGTCTTTCCT-ATCCTGAA-CTTCATGCATGAA-CCA  226

seq1  CAGGTCATCTATTGAGCTACAACACTTTCTTCTTTAATGATGGAGATAAT  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CAGGTCATCTATTGAGCTACAACACTTTC-TCTTTAATGATGGAGATAA-  274

seq1  TTTGAAAGAGATGCCATGCTCAGTGTGGACTGTAGTTCCAGAGTTTTGTT  349
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGAAAGAGATGCCATGCTCAGTGTGGACTGTAGTTCCAGAGTTTTG-T  323

seq1  TTTGTTTCATTGTTTTTGTTTCTAGGAGAAGCTAAACCGAATCCTGATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCATTGTTTTTGTTTCTAGGAGAAGCTAAACCGAATCCTGATCA  373

seq1  CCACACTAATAATTGGATCAGATTAACCTGTGTTAGAGCTTTAGCCCTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAATAATTGGATCAGATTAACCTGTGTTAGAGCTTTAGCCCTAC  423

seq1  CACTTACTGGTTTCCTTCTTTTACTTGTAACAGCAGTATACACCTCATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTGGTTTCCTTCTTTTACTTGTAACAGCAGTATACACCTCATTA  473

seq1  GAAGCAGGAAAAGTGTTATTCGGTGGAAAACTATGCAGTGCCTGGAGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGAAAAGTGTTATTCGGTGGAAAACTATGCAGTGCCTGGAGCAT  523

seq1  GGAGGTTGAGAAACATTTTCTGTGAAAGACCAGACAGGAAATATTTTAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGAGAAACATTTTCTGTGAAAGACCAGACAGGAAATATTTTAGG  573

seq1  CTCCACAACCTTTATGTTCAGTGTTGTTCAACTTAACTCAGGGAAAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAACCTTTATGTTCAGTGTTGTTCAACTTAACTCAGGGAAAATAG  623

seq1  ACACCGACAATTCATAAATGAATGGGTTCCAATAAAACTTTTATAAAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGACAATTCATAAATGAATGGGTTCCAATAAAACTTTTATAAAATC  673

seq1  AGCAACAGTTTGGTACCCATCTCTCTGAATTATATAACTCTAGCTTTCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGTTTGGTACCCATCTCTCTGAATTATATAACTCTAGCTTTCTA  723

seq1  TCGCCATTGATTATTCCAAGTGGATTTGCAAATAAATCTGATTAATAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATTGATTATTCCAAGTGGATTTGCAAATAAATCTGATTAATAATG  773

seq1  AAGACATGGGAATTCTGACCAGTTGACTTCCCTTTCCTATCATGTAAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGGGAATTCTGACCAGTTGACTTCCCTTTCCTATCATGTAAGAG  823

seq1  CAGGCCACTGTTGCTTCTACTTTCCTATTTATCTCAACATTCCCAGTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACTGTTGCTTCTACTTTCCTATTTATCTCAACATTCCCAGTCTA  873

seq1  TACATGTGTCTGTTTTTTGAATTCTCCCTCTAACTGGTTATAACATTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTCTGTTTTTTGAATTCTCCCTCTAACTGGTTATAACATTCAC  923

seq1  TCCTAAATGATTTAAAAATTTAACCATGTTAATAACATTGTAAAGACAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATGATTTAAAAATTTAACCATGTTAATAACATTGTAAAGACAAC  973

seq1  TCAGGAGTATCATGACAGATGTCAAGACTTA  1030
      |||||||||||||||||||||||||||||||
seq2  TCAGGAGTATCATGACAGATGTCAAGACTTA  1004


seq1: chrX_158531776_158532864
seq2: B6Ng01-326A11.g_62_1148

seq1  GAATTCCAAAGATGGAATGAACACCTGTATGAAAGGACTCAGAATTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGATGGAATGAACACCTGTATGAAAGGACTCAGAATTATAA  50

seq1  CTGGTATATAACAGACATCCATTAAAGGTTTGGAGTTTTGCAGTTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATATAACAGACATCCATTAAAGGTTTGGAGTTTTGCAGTTCATAT  100

seq1  ATGAGTGTTTTTAGGGTCTGGGGATGTAGCTCACTGGAGTGTGTACTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTTTTAGGGTCTGGGGATGTAGCTCACTGGAGTGTGTACTTGC  150

seq1  TTAGCATGTACTGTTTTCCAAGTATGCACTGGTTGCCAGCCAGCACTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGTACTGTTTTCCAAGTATGCACTGGTTGCCAGCCAGCACTGCG  200

seq1  TAAGCCATGCACTGCGCCACCCACTTATGATCCTAGCATTAAGAAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATGCACTGCGCCACCCACTTATGATCCTAGCATTAAGAAGGCAG  250

seq1  GCAAAAAGATTCAGGAACAAGAAGTTCAAGGTCATTCTTGGCTGTACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGATTCAGGAACAAGAAGTTCAAGGTCATTCTTGGCTGTACAAC  300

seq1  AAGTTCAAGACAAGCTTTAGCTATAGAGAATTCAAGATCAGTCTGGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAGACAAGCTTTAGCTATAGAGAATTCAAGATCAGTCTGGGTTA  350

seq1  CATTTAGACAACCCCATCTCAAAAACAAAAAGGTTTTAATTGTGCTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGACAACCCCATCTCAAAAACAAAAAGGTTTTAATTGTGCTTGCC  400

seq1  CAGAAAGGTGGAGGTAGTGGTGGTAGAAAATAGGAATTAGATAAGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGTGGAGGTAGTGGTGGTAGAAAATAGGAATTAGATAAGGAACT  450

seq1  TTAGACAATCACCTCCCTGGAAAATCAATTTTATTTAGATAGTGGATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAATCACCTCCCTGGAAAATCAATTTTATTTAGATAGTGGATAGA  500

seq1  TAAGAGCTCAGACTCTGGAATCAGCATTTTGATGCTGGCCAAGTGACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTCAGACTCTGGAATCAGCATTTTGATGCTGGCCAAGTGACTTC  550

seq1  TTTGTCCCTGTGCCAGATAATTTGTCTATAAAAGGCAATAGCAATGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCTGTGCCAGATAATTTGTCTATAAAAGGCAATAGCAATGCTAG  600

seq1  CTTTCAGAGTTAGTAAGGATTAAATGAACTAATGCATGGAAAAGGCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAGTTAGTAAGGATTAAATGAACTAATGCATGGAAAAGGCTTAG  650

seq1  AGTGGCATCCGACACACAGGAAAGTGTCAATCAGTGTTAGCCACAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCATCCGACACACAGGAAAGTGTCAATCAGTGTTAGCCACAGCTGG  700

seq1  GAGGAAGCAGAGGGAAAGTAATGAAAAGTGCAAAACTTATAAAAGACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCAGAGGGAAAGTAATGAAAAGTGCAAAACTTATAAAAGACTTG  750

seq1  AGGTCTGCTACTACTCTTTCAGTGTTATCCCCACTGGTTCTGGAGCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCTACTACTCTTTCAGTGTTATCCCCACTGGTTCTGGAGCTCTG  800

seq1  CTATTCTCACTTACAGAAAGTAAGAATCCTGGTACACCACGTCCCAGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCACTTACAGAAAGTAAGAATCCTGGTACACCACGTCCCAGCGT  850

seq1  AAAATGGCTCTTGCAGGGTGGCAGAGCCTGAAGTTCACAATCCAAAGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATGGCTCTTGCAGGGTGGCAGAGCCTGAAGTTCACAATCCAAAGGC-  899

seq1  ATCCAAGGAGCTATGGTTCCAATTATGAAAGCAAAGCTGTCCCAAATACT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCCAAGGAGCTATGGTTCCAATTATG-AAGCAAAGCTGTCCCAAATACT  948

seq1  ATTCCCTGCAGCTTGGCAGGAAAAATATGTTTGCAAC-AAACCAGACCAT  999
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ATTCCCTGCAGCTTGGCAGG-AAAATATGTTTGCAACAAAACCAGACCAT  997

seq1  GCCCCCATTTTCTGTCTTTGTTTCTCAGTCC-AAACA-TTTGTAAATCGT  1047
      |||||||  ||||||| |||  ||||||||| ||||| ||||||||||||
seq2  GCCCCCA--TTCTGTC-TTGGGTCTCAGTCCAAAACATTTTGTAAATCGT  1044

seq1  TCT-GAACTT-GGGAGAGGCGGTGATGGCAGCAGCAATAGCGGT  1089
      ||| |||||| ||||||||||||||| |||||||| ||||||||
seq2  TCTGGAACTTGGGGAGAGGCGGTGATTGCAGCAGC-ATAGCGGT  1087


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