BAC Information

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BAC

Clone NameB6Ng01-327E15
ChromosomeX (Build37)
Map Location 110,292,427 - 110,406,637
singlet/doubletdoublet
Overlap geneChm, EG664918
Upstream gene4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112
Downstream geneDach2, LOC237016, EG664945, EG634881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327E15.bB6Ng01-327E15.g
ACCGA114879GA114880
length1,180111
definitionB6Ng01-327E15.b B6Ng01-327E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,405,450 - 110,406,637)(110,292,427 - 110,292,537)
sequence
gaattcactgaagtgtctgctccaacctttagaaggcacagtcccctaca
ctctcatcagttgctgccttccatttctgtataattttaccacaaagtaa
tagagtctttcaaacctcccttctttattctgaaacagattttctccata
atgtttctgatcttcttatactcccagggtccttcagaaaatatagaact
tcttccactgtcttccttgacatttttgactgtccctcaggccatgaatc
acttttattccctagtcccctctcttctgagtctgtagtgtatacctctc
tgcttaatcttatttcttttattattaaaataaaccacaaagctttgaat
gaaaacaaacaaaaacagtctccaaacattcactaataattctcagagta
ctgtcccctgactcccggcatcggcatcctccggggactttgcagaaata
taaagtgttttaccatagccaacacctacaaaacagaatctctaagagat
ggggctcagaaatttgagatttaacaaaacctatagatgattctgatgaa
ggcaaactattgaaattcgctgatgatttttcaaactttttgaaaatctt
agcttcttacaatcatttttcaccttactatacttttgaatttaaccctt
tgcaattaaattcttcataacacagagttgaaattactataccaaacatg
atcaatgtgttgttaaataacaacccaaatttgtttccttaaatcttcat
cctttaatattctggatctatctgtactatatttttaattattaatattt
cattaattttctgagattacaatataattacatcacttcccccttcccta
tcctccctccaaaccatcccatatatccatctttgctctctttaaataat
gatcattcttatctcttggctttctgactttgcaacaacccaaatatttt
tcttcttccaatatttttaaatctaaaagaagatatttttccattagttt
gagaatcttaaaatcacattttcttatatcatcaaaataatatctcacta
ttcagtctcagttaaaacagcatgagaagaaatggtgtacagcccttgcc
atggctttacaatatgaaggataactcaccctaattagaacatccataga
tcaggattttgtgtactacctctcttagta

aactgaaacaacatgtatcctaaaacatgactaaattttctgctctcatt
gctttagtgactctaattctccggcttggggtttgggtttttttttttgg
ggtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_110405450_110406637
seq2: B6Ng01-327E15.b_47_1226 (reverse)

seq1  TACT-AGAGA-GTAGTACAACAAAACTCCTGATCTATTGATTGTTCT-AT  47
      |||| ||||| ||||||| |||||| ||||||||||| || |||||| ||
seq2  TACTAAGAGAGGTAGTAC-ACAAAA-TCCTGATCTATGGA-TGTTCTAAT  47

seq1  TA-GGTGAGTTAATCTTTCATTATTGTAAAGCCATTGCAAAGGGCTGTAC  96
      || |||||||| ||| |||| |||||||||||||| || |||||||||||
seq2  TAGGGTGAGTT-ATCCTTCA-TATTGTAAAGCCATGGC-AAGGGCTGTAC  94

seq1  AACATTTCTCTTCATGCTGTTTTACTTGAGACTGAATAGTGAAGATATTA  146
      | |||||||  |||||||||||||  ||||||||||||||| ||||||||
seq2  ACCATTTCTTCTCATGCTGTTTTAACTGAGACTGAATAGTG-AGATATTA  143

seq1  TTTTGATGATTATTAAGAAAATGGTGATTTTAAAGATTCTCAAACTAAAT  196
      ||||||||||   ||||||||| |||||||| ||||||||||||||||  
seq2  TTTTGATGAT--ATAAGAAAAT-GTGATTTT-AAGATTCTCAAACTAATG  189

seq1  GGAAAATATCTTCTTTTAGATTTAAAAAATATTTGGAAGAAGAAAAATAT  246
      | ||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  GAAAAATATCTTCTTTTAGATTT-AAAAATA-TTGGAAGAAGAAAAATAT  237

seq1  TT-GGTTGTTGCAAAGTCAGAAAGCCAAGAGATAAGAATGATCATTATTT  295
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGTTGCAAAGTCAGAAAGCCAAGAGATAAGAATGATCATTATTT  287

seq1  AAAGAGAGCAAAGATGGATATATGGGATGGTTTGGAGGGAGGATAGGGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGCAAAGATGGATATATGGGATGGTTTGGAGGGAGGATAGGGAA  337

seq1  GGGGGAAGTGATGTAATTATATTGTAATCTCAGAAAATTAATGAAATATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGTGATGTAATTATATTGTAATCTCAGAAAATTAATGAAATATT  387

seq1  AATAATTAAAAATATAGTACAGATAGATCCAGAATATTAAAGGATGAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAAAATATAGTACAGATAGATCCAGAATATTAAAGGATGAAGA  437

seq1  TTTAAGGAAACAAATTTGGGTTGTTATTTAACAACACATTGATCATGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAAACAAATTTGGGTTGTTATTTAACAACACATTGATCATGTTT  487

seq1  GGTATAGTAATTTCAACTCTGTGTTATGAAGAATTTAATTGCAAAGGGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGTAATTTCAACTCTGTGTTATGAAGAATTTAATTGCAAAGGGTT  537

seq1  AAATTCAAAAGTATAGTAAGGTGAAAAATGATTGTAAGAAGCTAAGATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAAGTATAGTAAGGTGAAAAATGATTGTAAGAAGCTAAGATTT  587

seq1  TCAAAAAGTTTGAAAAATCATCAGCGAATTTCAATAGTTTGCCTTCATCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGTTTGAAAAATCATCAGCGAATTTCAATAGTTTGCCTTCATCA  637

seq1  GAATCATCTATAGGTTTTGTTAAATCTCAAATTTCTGAGCCCCATCTCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCTATAGGTTTTGTTAAATCTCAAATTTCTGAGCCCCATCTCTT  687

seq1  AGAGATTCTGTTTTGTAGGTGTTGGCTATGGTAAAACACTTTATATTTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTGTTTTGTAGGTGTTGGCTATGGTAAAACACTTTATATTTCT  737

seq1  GCAAAGTCCCCGGAGGATGCCGATGCCGGGAGTCAGGGGACAGTACTCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCCCCGGAGGATGCCGATGCCGGGAGTCAGGGGACAGTACTCTG  787

seq1  AGAATTATTAGTGAATGTTTGGAGACTGTTTTTGTTTGTTTTCATTCAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTAGTGAATGTTTGGAGACTGTTTTTGTTTGTTTTCATTCAAA  837

seq1  GCTTTGTGGTTTATTTTAATAATAAAAGAAATAAGATTAAGCAGAGAGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGGTTTATTTTAATAATAAAAGAAATAAGATTAAGCAGAGAGGT  887

seq1  ATACACTACAGACTCAGAAGAGAGGGGACTAGGGAATAAAAGTGATTCAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTACAGACTCAGAAGAGAGGGGACTAGGGAATAAAAGTGATTCAT  937

seq1  GGCCTGAGGGACAGTCAAAAATGTCAAGGAAGACAGTGGAAGAAGTTCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGGGACAGTCAAAAATGTCAAGGAAGACAGTGGAAGAAGTTCTA  987

seq1  TATTTTCTGAAGGACCCTGGGAGTATAAGAAGATCAGAAACATTATGGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGAAGGACCCTGGGAGTATAAGAAGATCAGAAACATTATGGAG  1037

seq1  AAAATCTGTTTCAGAATAAAGAAGGGAGGTTTGAAAGACTCTATTACTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTTTCAGAATAAAGAAGGGAGGTTTGAAAGACTCTATTACTTT  1087

seq1  GTGGTAAAATTATACAGAAATGGAAGGCAGCAACTGATGAGAGTGTAGGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAAATTATACAGAAATGGAAGGCAGCAACTGATGAGAGTGTAGGG  1137

seq1  GACTGTGCCTTCTAAAGGTTGGAGCAGACACTTCAGTGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCCTTCTAAAGGTTGGAGCAGACACTTCAGTGAATTC  1180


seq1: chrX_110292427_110292537
seq2: B6Ng01-327E15.g_73_183

seq1  AACTGAAACAACATGTATCCTAAAACATGACTAAATTTTCTGCTCTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAACAACATGTATCCTAAAACATGACTAAATTTTCTGCTCTCATT  50

seq1  GCTTTAGTGACTCTAATTCTCCGGCTTGGGGTTTGGGTTTTTTTTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGTGACTCTAATTCTCCGGCTTGGGGTTTGGGTTTTTTTTTTTGG  100

seq1  GGTGGGGGGGG  111
      |||||||||||
seq2  GGTGGGGGGGG  111


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