BAC Information

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BAC

Clone NameB6Ng01-327O20
ChromosomeX (Build37)
Map Location 107,367,676 - 107,501,393
singlet/doubletdoublet
Overlap genenone
Upstream geneEG622976, LOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327O20.bB6Ng01-327O20.g
ACCGA115331GA115332
length1,1471,110
definitionB6Ng01-327O20.b B6Ng01-327O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,367,676 - 107,368,533)(107,500,273 - 107,501,393)
sequence
gaattcagtattatatgaaatctatgttcttggattgacaaaattaatat
tgtgattgatgctatattatcaaatgcaatcaattggtgttgtttataga
gctaaaattaatattaattataaaattcatctgtaaactccaataccaca
catagacaaagcaattctaaccagacagaacacagccagaggcagcacat
tgcacaacctcaaactatactatagagcaatagtgataatgatagcacag
tactgacacagatatagacagcgagaccagtggaacataagacctgaaag
ataaaccaatatgagatggataattaacttttcacaaaggtaaaaacatg
cactatgaagcaaacttttcaacagatgctgagggcaaaattggatatct
accagcagtagaattaaattaaattatgtcttaccctgcacaaaaagcaa
taaaaattatatcaaagtccttagtttaaaactggaaacactaaaagcat
taaaggaatgtttgggacatatatttagccaacaataaaacactgatagc
acaggaaacagacaacaagatttttaaaaattagaaaaaagtgataggac
atactactacaatgagagacaaagtcacaatattggcattgtaattgatg
gaagaatagcattttgtaaaattcaacatttttgttataaaaatagtgat
attatgaatataaaggatgtgcctcaaagtaaaaaaaaaaaagctaacaa
taaacgattaataggaaaaagttgaaatccttcttagccatgatgactat
agataacaagtagagatgactgtgtgtaaatgtgaaagaaaagattttga
aatttttcacaatgaagtttatattaaaaatgaactcaaaagaggttaac
ataccaaaactcacaatatccaggagataactgaggcacatatgggtgac
atagcctcatgtttcccagtacatggcaggcagagtacaccctgactttc
acagtgtgttgggaggccagcttaggtacataatgaaattatttattcaa
aacataaataaataggatattataaattcataaaaactgtaataaatatt
tattattaatgaatagaatattaatatatcactgtaaaatatagatt

gaattccttaatgacaattagttgaaaagcaactggaagtaagaagcgtg
ggttatgaggaggacataaggctctgtagaagctaggcaaatgtgagcaa
aggttccccaagcaatgtggtttttataattttgtcacacagcactgacc
tattggagctgtctcctatgcatcttataattttccaaagtaaaataaat
agggttctagaaagaggatctcctctgctgtacctggcttttgcctgcta
ctctgttgataaaccagttgaatcctctggactgagtttagggaagtctg
tgtgtcacttgtccttaattctcagcattaccaaaggattttctggctcc
cagtagagactagattgtttttctcagcacactccactgcattaccatat
gcacaaatgtatgcacagtcatgtgtgtgtttaggcacatgctcaggatt
tcgaatggcagggagtttgtggaaactgtttgcgaggaactggacaacat
tcctctggcttaagtaaaatatctctaaaataaatctgttaggatacaag
gatgtagagctactttgctctgcacagaagaattacctcacattttaaaa
tacatactcttcagcaccagacttcacttatttaattactacatgtgctc
atttctttcttctagttaacactcagctactctagaaaacgaagggacga
ggattgtcagctccagaaaccctgtgatagagagcaagaccctgtcttcc
aataaatacaatgaagaaataaaactgaaaaagttttaaaactccagcca
atttgctcacttgtaaaactagttgtatctatttttagaggttttttttt
ttctgttcttttctaagaggacaaaggatggatgtgatttggggagggag
agtgtgaaccccaggtatttgtagagtgtgctgttgtaaaagttgattcc
tacacttcgtaaacctctcagactgataccttggtgctttaacatgcagc
ctgtatcggagcctcactgtgactatttcatacaaacacaacacaattag
ctgctttatttggacgcatcatggtgaatgttttcttaagaaattgaact
agcatatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107367676_107368533
seq2: B6Ng01-327O20.b_336_1196

seq1  ATAAGACCTGAAAGATAAACCAATATGAGATGGATAATTAACTTTTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCTGAAAGATAAACCAATATGAGATGGATAATTAACTTTTCACA  50

seq1  AAGGTAAAAACATGCACTATGAAGCAAACTTTTCAACAGATGCTGAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAAACATGCACTATGAAGCAAACTTTTCAACAGATGCTGAGGGC  100

seq1  AAAATTGGATATCTACCAGCAGTAGAATTAAATTAAATTATGTCTTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGATATCTACCAGCAGTAGAATTAAATTAAATTATGTCTTACCC  150

seq1  TGCACAAAAAGCAATAAAAATTATATCAAAGTCCTTAGTTTAAAACTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAAAAGCAATAAAAATTATATCAAAGTCCTTAGTTTAAAACTGGA  200

seq1  AACACTAAAAGCATTAAAGGAATGTTTGGGACATATATTTAGCCAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAAAGCATTAAAGGAATGTTTGGGACATATATTTAGCCAACAAT  250

seq1  AAAACACTGATAGCACAGGAAACAGACAACAAGATTTTTAAAAATTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGATAGCACAGGAAACAGACAACAAGATTTTTAAAAATTAGAA  300

seq1  AAAAGTGATAGGACATACTACTACAATGAGAGACAAAGTCACAATATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGATAGGACATACTACTACAATGAGAGACAAAGTCACAATATTGG  350

seq1  CATTGTAATTGATGGAAGAATAGCATTTTGTAAAATTCAACATTTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAATTGATGGAAGAATAGCATTTTGTAAAATTCAACATTTTTGTT  400

seq1  ATAAAAATAGTGATATTATGAATATAAAGGATGTGCCTCAAAGTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAGTGATATTATGAATATAAAGGATGTGCCTCAAAGTAAAAAA  450

seq1  AAAAAAGCTAACAATAAACGATTAATAGGAAAAAGTTGAAATCCTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCTAACAATAAACGATTAATAGGAAAAAGTTGAAATCCTTCTTA  500

seq1  GCCATGATGACTATAGATAACAAGTAGAGATGACTGTGTGTAAATGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATGACTATAGATAACAAGTAGAGATGACTGTGTGTAAATGTGAA  550

seq1  AGAAAAGATTTTGAAATTTTTCACAATGAAGTTTATATTAAAAATGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGATTTTGAAATTTTTCACAATGAAGTTTATATTAAAAATGAACT  600

seq1  CAAAAGAGGTTAACATACCAAAACTCACAATATCCAGGAGATAACTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGGTTAACATACCAAAACTCACAATATCCAGGAGATAACTGAGG  650

seq1  CACATAT-GGTGACATAGCCTCATG-TTCCCAGTACATGGCAGGCAGAGT  698
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  CACATATGGGTGACATAGCCTCATGTTTCCCAGTACATGGCAGGCAGAGT  700

seq1  ACACCCTGACTTTCACAGTGTGTT-GGAGGCCAGCTTAGGTACATAATGA  747
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACACCCTGACTTTCACAGTGTGTTGGGAGGCCAGCTTAGGTACATAATGA  750

seq1  AATTA-TTATTCAAAAACATAAATAAATA-GATA-TATAAATTCAT-AAA  793
      ||||| |||||| |||||||||||||||| |||| ||||||||||| |||
seq2  AATTATTTATTC-AAAACATAAATAAATAGGATATTATAAATTCATAAAA  799

seq1  ACTGTAATAAAATATTATTAATTAATGAATAGGATTAATAAATAATATCA  843
      |||||||| |||||||  | |||||||||||| ||  || ||| ||||||
seq2  ACTGTAAT-AAATATTTATTATTAATGAATAGAAT--ATTAAT-ATATCA  845

seq1  CTGT-AAATATAGATT  858
      |||| |||||||||||
seq2  CTGTAAAATATAGATT  861


seq1: chrX_107500273_107501393
seq2: B6Ng01-327O20.g_65_1174 (reverse)

seq1  CAAATATGCCTTATTTTAAATTTCTCTAAGAAAACA-TCACACATGATGC  49
      |||||||||  ||  || ||||||| |||||||||| |||| ||||||| 
seq2  CAAATATGC--TA-GTTCAATTTCT-TAAGAAAACATTCAC-CATGATG-  44

seq1  CGTTCAAAATAAGCAGCTTATTGGTGTTGTTGTTTTGTAATGAATAGTTC  99
      ||| ||||  |||||||| ||| |||||||   ||||||   ||||| ||
seq2  CGTCCAAATAAAGCAGCTAATT-GTGTTGT--GTTTGTATGAAATAG-TC  90

seq1  ACAGTGA-GCTCCGATTACAGGCTGCATGGTTAAAGCAACCAAGGTATCA  148
      ||||||| ||||||| |||||||||||| |||||||| ||||||||||||
seq2  ACAGTGAGGCTCCGA-TACAGGCTGCAT-GTTAAAGC-ACCAAGGTATCA  137

seq1  GTCTGAGAGGTTTACGAAGTTGTAGGAATCACCTTTTACAACAGCACACT  198
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  GTCTGAGAGGTTTACGAAG-TGTAGGAATCAACTTTTACAACAGCACACT  186

seq1  CTACAAATACCTGGGGTTCACACTCTCCCT-CCCAAATCACATCCATCCT  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTACAAATACCTGGGGTTCACACTCTCCCTCCCCAAATCACATCCATCCT  236

seq1  TTGTCCTCTTAGAAAAGAACAG-AAAAAAAAAACCTCTAAAAATAGATAC  296
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTCCTCTTAGAAAAGAACAGAAAAAAAAAAACCTCTAAAAATAGATAC  286

seq1  AACTAGTTTTACAAGTGAGCAAATTGGCTGGAGTTTTAAAACTTTTTCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTTTACAAGTGAGCAAATTGGCTGGAGTTTTAAAACTTTTTCAG  336

seq1  TTTTATTTCTTCATTGTATTTATTTGGAAGACAGGGTCTTGCTCTCTATC  396
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTATTTCTTCATTGTATTTA-TTGGAAGACAGGGTCTTGCTCTCTATC  385

seq1  ACAGGGTTTCTGGAGCTGACAATCCTCGTCCCTTCGTTTTCTAGAGTAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTGGAGCTGACAATCCTCGTCCCTTCGTTTTCTAGAGTAGC  435

seq1  TGAGTGTTAACTAGAAGAAAGAAATGAGCACATGTAGTAATTAAATAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTAACTAGAAGAAAGAAATGAGCACATGTAGTAATTAAATAAGT  485

seq1  GAAGTCTGGTGCTGAAGAGTATGTATTTTAAAATGTGAGGTAATTCTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGGTGCTGAAGAGTATGTATTTTAAAATGTGAGGTAATTCTTCT  535

seq1  GTGCAGAGCAAAGTAGCTCTACATCCTTGTATCCTAACAGATTTATTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGCAAAGTAGCTCTACATCCTTGTATCCTAACAGATTTATTTTA  585

seq1  GAGATATTTTACTTAAGCCAGAGGAATGTTGTCCAGTTCCTCGCAAACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTTTACTTAAGCCAGAGGAATGTTGTCCAGTTCCTCGCAAACAG  635

seq1  TTTCCACAAACTCCCTGCCATTCGAAATCCTGAGCATGTGCCTAAACACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAAACTCCCTGCCATTCGAAATCCTGAGCATGTGCCTAAACACA  685

seq1  CACATGACTGTGCATACATTTGTGCATATGGTAATGCAGTGGAGTGTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTGTGCATACATTTGTGCATATGGTAATGCAGTGGAGTGTGCT  735

seq1  GAGAAAAACAATCTAGTCTCTACTGGGAGCCAGAAAATCCTTTGGTAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACAATCTAGTCTCTACTGGGAGCCAGAAAATCCTTTGGTAATG  785

seq1  CTGAGAATTAAGGACAAGTGACACACAGACTTCCCTAAACTCAGTCCAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTAAGGACAAGTGACACACAGACTTCCCTAAACTCAGTCCAGA  835

seq1  GGATTCAACTGGTTTATCAACAGAGTAGCAGGCAAAAGCCAGGTACAGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAACTGGTTTATCAACAGAGTAGCAGGCAAAAGCCAGGTACAGCA  885

seq1  GAGGAGATCCTCTTTCTAGAACCCTATTTATTTTACTTTGGAAAATTATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATCCTCTTTCTAGAACCCTATTTATTTTACTTTGGAAAATTATA  935

seq1  AGATGCATAGGAGACAGCTCCAATAGGTCAGTGCTGTGTGACAAAATTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATAGGAGACAGCTCCAATAGGTCAGTGCTGTGTGACAAAATTAT  985

seq1  AAAAACCACATTGCTTGGGGAACCTTTGCTCACATTTGCCTAGCTTCTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACATTGCTTGGGGAACCTTTGCTCACATTTGCCTAGCTTCTAC  1035

seq1  AGAGCCTTATGTCCTCCTCATAACCCACGCTTCTTACTTCCAGTTGCTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTTATGTCCTCCTCATAACCCACGCTTCTTACTTCCAGTTGCTTT  1085

seq1  TCAACTAATTGTCATTAAGGAATTC  1121
      |||||||||||||||||||||||||
seq2  TCAACTAATTGTCATTAAGGAATTC  1110


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