BAC Information

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BAC

Clone NameB6Ng01-330I20
ChromosomeX (Build37)
Map Location 151,012,111 - 151,013,227
singlet/doubletsinglet
Overlap geneEG434881
Upstream geneLOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik
Downstream geneLOC100040899, LOC667331, LOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330I20.bB6Ng01-330I20.g
ACCGA117183GA117184
length1,1941,107
definitionB6Ng01-330I20.b B6Ng01-330I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaggcctattcctaaacatagtaaaagcaatatatagcaaaaca
gtagccaaaatcaaagtaaatggagaaaagctgaaagcaatcccattaaa
atcagggactagacaaggctaccctctttctccctatctattcattatag
tccttgatgtcctagccagagcaattcgacaacaaaaggagttcaatggg
atacaaattggaaaagaagaagtcaaaatatcaacatttgcagatgatat
gatcgtgtatataaatgaccctaaaaattccaccagagaactcctaaacc
taataagcaattttagtgaagtagctagatataaaattaactcaaacaaa
tcagtggcatttctctactcaaaggataaacaggctgagaaagaaattgg
ggaaacaacacccttcacaatagtgtcaaataatataaaacaccttggtg
tgactctaactaaggaagtgaaagatctgtatgataagaacttcaaggct
ctgaaggaagaaatcaaagatatcagaagatggaaagatctcacatgctc
atcgattggcatgatcaatttagtaaaaatgtctatcttgctgaaagtag
tctacagatattatgcattccccatcaaaattccaactcaattcttcacc
cagttagaaaggcaatttgcaaattcatctaaataacaaaaaacctagaa
caattgtgataaaaactgcatgatactggtacagcaacagacaggtagac
caattaatagaattaaagatagagagatgaaccctcacacctatgatgac
ttgatctttgacaagggagctaaaaccattcaatggaataaagacagaat
cttcaacaaatggtgctggtacaactggaggttatcagtttgaagaattg
aattgatctatttttatctacttgtactaaactcaattttaagtggatca
aggaactccacataaaaccagaggttctgaacttatagaggagaatgcgg
ggagatgcctcaaacatatgggcacaggggaaaatagtgaacagaacagc
atgcttgtctgtagatgtaagaatcgtcaatggactcataaaatgaagct
tctgtggcaaagacactgtccaaagcaaaaaagcacaagattggaaagga
tcttaccatccttaaatcagagaagggaaatctcatatatccac
gaattctttgagaaacaaacaaacaaaaaatacataataaccacagggga
atgctccacttattgtagctgattattacataatacttacaagggcactt
taaaatctgcataaaccttgagacaaaagagacaaaagaaaaataataca
catggtatgcccatttaagtcaagcaaaagcatacgtgatttctttaaat
acccaaagatttgaacatgatggaacaataggtatattaattggatcaag
gagaagacattgttataattctctagatattatcctaatagatgtgcatt
tctgtggaataatatgtgtaatatttcattattaaaatccacatgaacat
atacttaaatttctatttataatgagtatcgtataaaatttcatggtagg
atgctgatttcctaaagtttgacatagtgtgttgaattcctatatcatca
aactattataagtatgtaaagaatgaggaataatgaatatgtgcattctg
tatccactttttattcaatatcgcactttgtgaaaactgatttcattgtt
atgcaacatataacggatctagagggtttttgatccaatatcaactttga
ctgacaaaataatactttatattttaatatgaaaaaaacttatttagctt
tgtcaattaaggtctatgagtgtactaaaaggaaagtaagaaaaatcata
ttgagatgacatcctgatgcattctttaagagaaaaggaaaaggaaaaga
acatcagcgattccagaatgtacataacatcattgccattagacatgcag
aaggttgaggattctgtactaggaaatctcatttaaaggagagattaact
gtcaactaaccacaattccaagtgtcctgtggaatgtgctttctaaaagg
gtcaagagagtaaaagtaccacttgggaaatataataacatgatgggctt
gccattgatgggaaattgattggaatcacataagctcgtcttgtcagtct
catctgaagtagcagactacatgaccattatgctttgaggagaatggaag
tagatgtagaataatttttgcagaccaactagctagctttcaaggatgtg
ttaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151012111_151013227
seq2: B6Ng01-330I20.g_67_1173

seq1  GAATTCTTTGAGAAACAAACAAACAAAAAATACATAATAACCACAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAAACAAACAAACAAAAAATACATAATAACCACAGGGGA  50

seq1  ATGCTCCACTTATTGTAGCTGATTATTACATAATACTTACAAGGGCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACTTATTGTAGCTGATTATTACATAATACTTACAAGGGCACTT  100

seq1  TAAAATCTGCATAAACCTTGAGACAAAAGAGACAAAAGAAAAATAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGCATAAACCTTGAGACAAAAGAGACAAAAGAAAAATAATACA  150

seq1  CATGGTATGCCCATTTAAGTCAAGCAAAAGCATACGTGATTTCTTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATGCCCATTTAAGTCAAGCAAAAGCATACGTGATTTCTTTAAAT  200

seq1  ACCCAAAGATTTGAACATGATGGAACAATAGGTATATTAATTGGATCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGATTTGAACATGATGGAACAATAGGTATATTAATTGGATCAAG  250

seq1  GAGAAGACATTGTTATAATTCTCTAGATATTATCCTAATAGATGTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACATTGTTATAATTCTCTAGATATTATCCTAATAGATGTGCATT  300

seq1  TCTGTGGAATAATATGTGTAATATTTCATTATTAAAATCCACATGAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAATAATATGTGTAATATTTCATTATTAAAATCCACATGAACAT  350

seq1  ATACTTAAATTTCTATTTATAATGAGTATCGTATAAAATTTCATGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAATTTCTATTTATAATGAGTATCGTATAAAATTTCATGGTAGG  400

seq1  ATGCTGATTTCCTAAAGTTTGACATAGTGTGTTGAATTCCTATATCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTTCCTAAAGTTTGACATAGTGTGTTGAATTCCTATATCATCA  450

seq1  AACTATTATAAGTATGTAAAGAATGAGGAATAATGAATATGTGCATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTATAAGTATGTAAAGAATGAGGAATAATGAATATGTGCATTCTG  500

seq1  TATCCACTTTTTATTCAATATCGCACTTTGTGAAAACTGATTTCATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTTTTTATTCAATATCGCACTTTGTGAAAACTGATTTCATTGTT  550

seq1  ATGCAACATATAACGGATCTAGAGGGTTTTTGATCCAATATCAACTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACATATAACGGATCTAGAGGGTTTTTGATCCAATATCAACTTTGA  600

seq1  CTGACAAAATAATACTTTATATTTTAATATGAAAAAAACTTATTTAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAATAATACTTTATATTTTAATATGAAAAAAACTTATTTAGCTT  650

seq1  TGTCAATTAAGGTCTATGAGTGTACTAAAAGGAAAGTAAGAAAAATCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTAAGGTCTATGAGTGTACTAAAAGGAAAGTAAGAAAAATCATA  700

seq1  TTGAGATGACATCCTGATGCATTCTTTAAGAGAAAAGGAAAAGGAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGACATCCTGATGCATTCTTTAAGAGAAAAGGAAAAGGAAAAGA  750

seq1  ACATCAGCGATTCCAGAATGTACATAACATCATTGCCATTAGACATGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCGATTCCAGAATGTACATAACATCATTGCCATTAGACATGCAG  800

seq1  AAGGTTGAGGATTCTGTACTAGGAAATCTCATTTAAAGGAGAGATTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGAGGATTCTGTACTAGGAAATCTCATTTAAAGGAGAGATTAACT  850

seq1  GTCAACTAACCACAATTCCAAAGTGTCCTGTGGAATGTGCTTTCTAAAAG  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCAACTAACCACAATTCC-AAGTGTCCTGTGGAATGTGCTTTCTAAAAG  899

seq1  GGTCAAGAGAGTAAAAGTACCACTTGGGAAATATAATAAACATGATGGGC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTCAAGAGAGTAAAAGTACCACTTGGGAAATATAAT-AACATGATGGGC  948

seq1  TTGCCATTGAT-GGAAATTGATTGGGAATCAACATAAGCTCGTTCTTGTC  999
      ||||||||||| ||||||||||| |||||| ||||||||||| |||||||
seq2  TTGCCATTGATGGGAAATTGATT-GGAATC-ACATAAGCTCG-TCTTGTC  995

seq1  AAGTCTCATCTGAAGTAGCAGACTACATGACCAATATGCTTTGAAGGAGA  1049
       |||||||||||||||||||||||||||||||| ||||||||| ||||| 
seq2  -AGTCTCATCTGAAGTAGCAGACTACATGACCATTATGCTTTG-AGGAG-  1042

seq1  AATGAAAGTAGGATGTAGAATAATTTTTTGCCAGACAAATTAGCTAGCTT  1099
      |||| ||||| |||||||||||||||||   ||||| || ||||||||||
seq2  AATGGAAGTA-GATGTAGAATAATTTTT--GCAGACCAACTAGCTAGCTT  1089

seq1  TCCAGGATGTGGTAATGT  1117
      || |||||||| ||||||
seq2  TCAAGGATGTGTTAATGT  1107