BAC Information

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BAC

Clone NameB6Ng01-330L08
ChromosomeX (Build37)
Map Location 27,038,528 - 27,039,771
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039120, LOC619914, LOC100039039, LOC619991, LOC664844, LOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208
Downstream geneEG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898, LOC22526, EG664906, LOC664917, LOC100039324, LOC100039334
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330L08.bB6Ng01-330L08.g
ACCGA117288GA117289
length1,2341,028
definitionB6Ng01-330L08.b B6Ng01-330L08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaggtaaatgctgatacacaatgccatattgaggtaagtgttt
ttatctgacactggatagaaaattgatgtctgagatcctacccaccacag
gaagttctgttgatgtccctgatgcattcatgtagctcctgatgtgaaac
atgtatggtattttcattattaagattctacctgttaccaaaaaacaaaa
caaaacaaaacaaaacaaaataaaactatgttgataccagtgatgtgtgc
tgtgatcagcaattttgatggagtccaagtttgattttattcctattgct
aatggaaaccctactggtggctatgatctgtgctactgcttgaaagtata
atgaacctcaaggtccacaataatgcccaagtttattttgagggaagtat
tcttatctggttctggagatcagattaaaatctggaaacctacctgcaac
aggatcatcagttggtatttctcatgaatgtgtgtagctcacaacatcta
acatgtgataaatattgatacttgtgatcctgctggatacctgaagctac
tttgaagtcagtgatgcagctatgaccagcaatcatgatggggtctttta
ttcctgttgctaattgagacccaggtgatggctaagatctgtgttgtttc
ttgagaacctgatgaattcaaaggcccatagtgaaatgataggttatatt
gaggtaagtgttctcaataatggagatcagattgatatctaagatcctaa
cagcaacaacaaattctgttgatttcactgatacatgaatacattgcatg
atgttgactatgtaatgtgcaagatctttactgccacctgaaataatgtg
gatatcagtgatttatcctgcaactaaatgaggcaattatgacaatgatt
tattctgccctgtgaattgaggttgatgtcattgatatataactgtctac
cacaccccatgggattgccctaggtccatgctaccattgacaacctggtt
tgcctgtgatcctgctgtccctgtaccatgttaattatcactattacata
gttctgtagaaacttatgggtgatatcattcatccattctgctcagtagc
cttgtttaaaccccaagttctatgatgccttcttgaatatgttaatgtca
tggattctgagcagcacgactttatgtgaaattaaaatttcgtctggtca
ctacatgtcgatttggtgttctgagatatattat
gaattctcacctgagcaatatcgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcaacagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagatggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttataaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactattcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgatgacaccattgcatacactagcaagatttttatttga
aaggacccagatgtagctgtctccttgtgagactatgccgtggcctagca
aacacagaagtggatgctcacagtcagctaatggatggatcataggctcc
caattggaggagctagagaaagtagccaggaagtctaaagccgcatctgc
aacccttataggtgtgaatcatcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27038528_27039771
seq2: B6Ng01-330L08.b_51_1284 (reverse)

seq1  ATAATATATCTCAGAACACATAATTCAACATGATGTGACACAGCAGAATT  50
      |||||||||||||||||||  || || |||||  ||||| |||  ||| |
seq2  ATAATATATCTCAGAACAC-CAAATCGACATGTAGTGAC-CAGACGAAAT  48

seq1  TATCTAAAATTTCACAT-AAGTCTGTGCTTGCCTCAGGAATCCTTGACAT  99
      | |    |||||||||| ||||| |||||   |||| |||||| ||||||
seq2  TTT----AATTTCACATAAAGTC-GTGCT--GCTCA-GAATCCATGACAT  90

seq1  TAACAATAATCCAAGAA-GCATCAT-GGACTTTGGGTTTAAACATGGCTA  147
      |||||   || |||||| ||||||| | |||| ||||||||||| |||||
seq2  TAACA--TATTCAAGAAGGCATCATAGAACTTGGGGTTTAAACAAGGCTA  138

seq1  CTTGAGGCAGAATGGATGATTGATATCA-CCAT-AGTTTCTACAGGAACT  195
      | ||| ||||||||||||| |||||||| |||| |||||||||| |||||
seq2  C-TGA-GCAGAATGGATGAATGATATCACCCATAAGTTTCTACA-GAACT  185

seq1  ATGTAATAGTGAT-ATTAACATGGTAACCAGGGACAGCAGGGATCACAGG  244
      ||||||||||||| ||||||||||||  ||||||||||| ||||||||||
seq2  ATGTAATAGTGATAATTAACATGGTA--CAGGGACAGCA-GGATCACAGG  232

seq1  C-AACCAGGTTGTGAATGGTAGCATGGACCTAGGGCAATCCCATGGGGTG  293
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGGTTGTCAATGGTAGCATGGACCTAGGGCAATCCCATGGGGTG  282

seq1  T-GTAGACAGTTATATATCAATGACATCAACCTCAATTCACAGGGCAGAA  342
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACAGTTATATATCAATGACATCAACCTCAATTCACAGGGCAGAA  332

seq1  TAAATCATTGTCATAATTGCCTCATTTAGTTGCAGGATAAATCACTGATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATTGTCATAATTGCCTCATTTAGTTGCAGGATAAATCACTGATA  382

seq1  TCCACATTATTTCAGGTGGCAGTAAAGATCTTGCACATTACATAGTCAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTATTTCAGGTGGCAGTAAAGATCTTGCACATTACATAGTCAAC  432

seq1  ATCATGCAATGTATTCATGTATCAGTGAAATCAACAGAATTTGTTGTTGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCAATGTATTCATGTATCAGTGAAATCAACAGAATTTGTTGTTGC  482

seq1  TGTTAGGATCTTAGATATCAATCTGATCTCCATTATTGAGAACACTTACC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGATCTTAGATATCAATCTGATCTCCATTATTGAGAACACTTACC  532

seq1  TCAATATAACCTATCATTTCACTATGGGCCTTTGAATTCATCAGGTTCTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATAACCTATCATTTCACTATGGGCCTTTGAATTCATCAGGTTCTC  582

seq1  AAGAAACAACACAGATCTTAGCCATCACCTGGGTCTCAATTAGCAACAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAACACAGATCTTAGCCATCACCTGGGTCTCAATTAGCAACAGG  632

seq1  AATAAAAGACCCCATCATGATTGCTGGTCATAGCTGCATCACTGACTTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGACCCCATCATGATTGCTGGTCATAGCTGCATCACTGACTTCA  682

seq1  AAGTAGCTTCAGGTATCCAGCAGGATCACAAGTATCAATATTTATCACAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTTCAGGTATCCAGCAGGATCACAAGTATCAATATTTATCACAT  732

seq1  GTTAGATGTTGTGAGCTACACACATTCATGAGAAATACCAACTGATGATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGTTGTGAGCTACACACATTCATGAGAAATACCAACTGATGATC  782

seq1  CTGTTGCAGGTAGGTTTCCAGATTTTAATCTGATCTCCAGAACCAGATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCAGGTAGGTTTCCAGATTTTAATCTGATCTCCAGAACCAGATAA  832

seq1  GAATACTTCCCTCAAAATAAACTTGGGCATTATTGTGGACCTTGAGGTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTCCCTCAAAATAAACTTGGGCATTATTGTGGACCTTGAGGTTC  882

seq1  ATTATACTTTCAAGCAGTAGCACAGATCATAGCCACCAGTAGGGTTTCCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTTTCAAGCAGTAGCACAGATCATAGCCACCAGTAGGGTTTCCA  932

seq1  TTAGCAATAGGAATAAAATCAAACTTGGACTCCATCAAAATTGCTGATCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATAGGAATAAAATCAAACTTGGACTCCATCAAAATTGCTGATCA  982

seq1  CAGCACACATCACTGGTATCAACATAGTTTTATTTTGTTTTGTTTTGTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATCACTGGTATCAACATAGTTTTATTTTGTTTTGTTTTGTTT  1032

seq1  TGTTTTGTTTTTTGGTAACAGGTAGAATCTTAATAATGAAAATACCATAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTTGGTAACAGGTAGAATCTTAATAATGAAAATACCATAC  1082

seq1  ATGTTTCACATCAGGAGCTACATGAATGCATCAGGGACATCAACAGAACT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCACATCAGGAGCTACATGAATGCATCAGGGACATCAACAGAACT  1132

seq1  TCCTGTGGTGGGTAGGATCTCAGACATCAATTTTCTATCCAGTGTCAGAT  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGGTGGGTAGGATCTCAGACATCAATTTTCTATCCAGTGTCAGAT  1182

seq1  AAAAACACTTACCTCAATATGGCATTGTGTATCAGCATTTACCTTGGAAT  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTTACCTCAATATGGCATTGTGTATCAGCATTTACCTTGGAAT  1232

seq1  TC  1244
      ||
seq2  TC  1234