BAC Information

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BAC

Clone NameB6Ng01-332F01
ChromosomeX (Build37)
Map Location 89,578,721 - 89,701,718
singlet/doubletdoublet
Overlap geneMageb18
Upstream geneEG278167, EG667988, EG667993, EG385489, 1700084M14Rik, EG236891, LOC629542, Mageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, EG436259, EG668061
Downstream geneEG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx, Pola1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332F01.bB6Ng01-332F01.g
ACCGA118451GA118452
length1,1001,092
definitionB6Ng01-332F01.b B6Ng01-332F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,700,613 - 89,701,718)(89,578,721 - 89,579,831)
sequence
gaattccagccagtgggtttaaaggtatatactaaaggtattccagtcat
agggaccaaaagtgtatatttcagccggatcatatatttagatggtatcc
cttgccagaacagccatgttgctggtttaaaattcctctacactccacac
tttctttttgtttctattctcttacctctctggttggttaacagattttt
tttaattttgttcctgtttttcactatttatgataacatgcttttttttt
tttttaccatttctattcttttcaagcctttctttagggttcttgagttc
ataatttataactgctgatatgtgttgtaaataagccttttaaggagcac
taacagtcagcaatgcgttcccatatatccacaaataaccatttgcagga
tcaatacaaagaaaataacagtcctctgacaatgaaaattggtccttgaa
agtctcaataaagttaccagccaaagcattttatgtagaattaaaaggtg
ctattgttcaaacaatctttgtcagagtggcaacatggtgttcaataatc
tacattagctggctggactctgtccttagtaaggtgaaaattctttacta
aattatgtaagtgtggcaataaaaactatttctaaaaacataaaaaattt
aaaagttaaatgtcatatattttaactaatattttataacaatttacttt
tgaatgacattcctctgtattatcatagtattaagtaaaatattaaaatg
agttattaaatattgcctttacctctaataaattttaaaaatacaggttc
ttcttcaaagaaaatttattgtttgtgtataatgctaagtaagaattttc
tagttaggaaaggagcatagtcattttaatttgggattcaattaggaatg
tgactttaaataccacttctatcccttacaaattgatttatttggaatac
ttctctaactgttgttaacaagttgagaattttacatgtaaagaatgtat
ttcagcttttaacatggggagttaatagtattattatgagagtttatgac
tgtatgattattgatattgtctgccttcacccatccccaggctggtttca

gaattccatgtgtgagggtggactgggagtgagtactctcagaaatggaa
acgtgaatgtcaccctttcaatgttattaaaattaagacatgctgacagc
actttgcttaaacgaggtttatcagttgttactgttataaggtacagctt
caatctagatgtgccctaacaggcactaatcttataggtgttgtttagct
gcccacacagcagaggtatatactataaaaagctgaaatggaaataatgt
catatacttggaaattctatgacaagaattctactgccatcaagagtatc
tttgcttcatagcaggataaatgtttctctaattcactttaggaaacact
gaagctttgctgaagaaatagccatactggctccccaaagcaccatgaaa
atactctctctgcaccaaacagcaatttatttcagaataacaatttgaat
tttgacataaaatgagcaattcattgaaacaattggtgttgttaaacatt
aatttgtgatgactattagggagatgcacacataatgattcttagacact
aaaagcaatcccttttttttcttttttcttttctttttttttttttttgg
tttccaaatgtaacatttgtgtggttgttttgctttggtgtctaaagtgc
tacacatttattataaattaatacacctatctgcaaatgttatacagact
tttacctctctgaaattactaaatcccactccatctctaaatgctttaat
ttctttcatttctccaacaattatcttatatctttgcagggatttgctga
cttccaaaatgataaggacacttgaaaacctgaaggagattcaaatttcc
acttcacttggtacttaattataaaccatttttgtaataatgattgttgg
acagctgcaggggaaaatcattaaccttccctgaataaatctaacatatc
cccaataaaacctttgctctctaggatcataatgtacagagctagataca
tgctctgggtgtttcttactgtagcaggtctgacatattacgatgtacat
ttgtctgtggatcagataagattttgaggtatgatctggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_89700613_89701718
seq2: B6Ng01-332F01.b_44_1143 (reverse)

seq1  TGAAACCAGCCTGGGGAAGGGTGAAGGCAGAAACAAATATAAAATAATCA  50
      ||||||||||||||||| |||||||||||||    |||||  ||||||||
seq2  TGAAACCAGCCTGGGGATGGGTGAAGGCAGA---CAATAT-CAATAATCA  46

seq1  TACAGTCATTAAACTCTCATTAATATACTAATTAACT-CCCATGTTAAAA  99
      |||||||| ||||||||||| |  ||||| ||||||| ||||||||||||
seq2  TACAGTCA-TAAACTCTCATAATAATACT-ATTAACTCCCCATGTTAAAA  94

seq1  GCTGAAATACATTCTTTACATGTAAATATTCTCAACTTGTTAACAACAGT  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTGAAATACATTCTTTACATGTAAA-ATTCTCAACTTGTTAACAACAGT  143

seq1  TAGAGAAGTATTCCAAATAAATCAATTTGTAAGGGATAGAAGTGGTATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGTATTCCAAATAAATCAATTTGTAAGGGATAGAAGTGGTATTT  193

seq1  AAAGTCACATTCCTAATTGAATCCCAAATTAAAATGACTATGCTCCTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACATTCCTAATTGAATCCCAAATTAAAATGACTATGCTCCTTTC  243

seq1  CTAACTAGAAAATTCTTACTTAGCATTATACACAAACAATAAATTTTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAGAAAATTCTTACTTAGCATTATACACAAACAATAAATTTTCTT  293

seq1  TGAAGAAGAACCTGTATTTTTAAAATTTATTAGAGGTAAAGGCAATATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGAACCTGTATTTTTAAAATTTATTAGAGGTAAAGGCAATATTT  343

seq1  AATAACTCATTTTAATATTTTACTTAATACTATGATAATACAGAGGAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCATTTTAATATTTTACTTAATACTATGATAATACAGAGGAATG  393

seq1  TCATTCAAAAGTAAATTGTTATAAAATATTAGTTAAAATATATGACATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAAAGTAAATTGTTATAAAATATTAGTTAAAATATATGACATTT  443

seq1  AACTTTTAAATTTTTTATGTTTTTAGAAATAGTTTTTATTGCCACACTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAATTTTTTATGTTTTTAGAAATAGTTTTTATTGCCACACTTA  493

seq1  CATAATTTAGTAAAGAATTTTCACCTTACTAAGGACAGAGTCCAGCCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTAGTAAAGAATTTTCACCTTACTAAGGACAGAGTCCAGCCAGC  543

seq1  TAATGTAGATTATTGAACACCATGTTGCCACTCTGACAAAGATTGTTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGATTATTGAACACCATGTTGCCACTCTGACAAAGATTGTTTGA  593

seq1  ACAATAGCACCTTTTAATTCTACATAAAATGCTTTGGCTGGTAACTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCACCTTTTAATTCTACATAAAATGCTTTGGCTGGTAACTTTAT  643

seq1  TGAGACTTTCAAGGACCAATTTTCATTGTCAGAGGACTGTTATTTTCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTTCAAGGACCAATTTTCATTGTCAGAGGACTGTTATTTTCTTT  693

seq1  GTATTGATCCTGCAAATGGTTATTTGTGGATATATGGGAACGCATTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATCCTGCAAATGGTTATTTGTGGATATATGGGAACGCATTGCTG  743

seq1  ACTGTTAGTGCTCCTTAAAAGGCTTATTTACAACACATATCAGCAGTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGTGCTCCTTAAAAGGCTTATTTACAACACATATCAGCAGTTAT  793

seq1  AAATTATGAACTCAAGAACCCTAAAGAAAGGCTTGAAAAGAATAGAAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGAACTCAAGAACCCTAAAGAAAGGCTTGAAAAGAATAGAAATG  843

seq1  GTAAAAAAAAAAAAAAGCATGTTATCATAAATAGTGAAAAACAGGAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAAAAAAAAGCATGTTATCATAAATAGTGAAAAACAGGAACAA  893

seq1  AATTAAAAAAAATCTGTTAACCAACCAGAGAGGTAAGAGAATAGAAACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAAAATCTGTTAACCAACCAGAGAGGTAAGAGAATAGAAACAA  943

seq1  AAAGAAAGTGTGGAGTGTAGAGGAATTTTAAACCAGCAACATGGCTGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGTGGAGTGTAGAGGAATTTTAAACCAGCAACATGGCTGTTC  993

seq1  TGGCAAGGGATACCATCTAAATATATGATCCGGCTGAAATATACACTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGGATACCATCTAAATATATGATCCGGCTGAAATATACACTTTT  1043

seq1  GGTCCCTATGACTGGAATACCTTTAGTATATACCTTTAAACCCACTGGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTATGACTGGAATACCTTTAGTATATACCTTTAAACCCACTGGCT  1093

seq1  GGAATTC  1106
      |||||||
seq2  GGAATTC  1100

seq1: chrX_89578721_89579831
seq2: B6Ng01-332F01.g_63_1154

seq1  GAATTCCATGTGTGAGGGTGGACTGGGAGTGAGTACTCTCAGAAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGTGAGGGTGGACTGGGAGTGAGTACTCTCAGAAATGGAA  50

seq1  ACGTGAATGTCACCCTTTCAATGTTATTAAAATTAAGACATGCTGACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAATGTCACCCTTTCAATGTTATTAAAATTAAGACATGCTGACAGC  100

seq1  ACTTTGCTTAAACGAGGTTTATCAGTTGTTACTGTTATAAGGTACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTTAAACGAGGTTTATCAGTTGTTACTGTTATAAGGTACAGCTT  150

seq1  CAATCTAGATGTGCCCTAACAGGCACTAATCTTATAGGTGTTGTTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGATGTGCCCTAACAGGCACTAATCTTATAGGTGTTGTTTAGCT  200

seq1  GCCCACACAGCAGAGGTATATACTATAAAAAGCTGAAATGGAAATAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACAGCAGAGGTATATACTATAAAAAGCTGAAATGGAAATAATGT  250

seq1  CATATACTTGGAAATTCTATGACAAGAATTCTACTGCCATCAAGAGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTTGGAAATTCTATGACAAGAATTCTACTGCCATCAAGAGTATC  300

seq1  TTTGCTTCATAGCAGGATAAATGTTTCTCTAATTCACTTTAGGAAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCATAGCAGGATAAATGTTTCTCTAATTCACTTTAGGAAACACT  350

seq1  GAAGCTTTGCTGAAGAAATAGCCATACTGGCTCCCCAAAGCACCATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTGCTGAAGAAATAGCCATACTGGCTCCCCAAAGCACCATGAAA  400

seq1  ATACTCTCTCTGCACCAAACAGCAATTTATTTCAGAATAACAATTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCTCTGCACCAAACAGCAATTTATTTCAGAATAACAATTTGAAT  450

seq1  TTTGACATAAAATGAGCAATTCATTGAAACAATTGGTGTTGTTAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAAAATGAGCAATTCATTGAAACAATTGGTGTTGTTAAACATT  500

seq1  AATTTGTGATGACTATTAGGGAGATGCACACATAATGATTCTTAGACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGATGACTATTAGGGAGATGCACACATAATGATTCTTAGACACT  550

seq1  AAAAGCAATCCCTTTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATCCCTTTTTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTGG  600

seq1  TTTCCAAATGTAACATTTGTGTGGTTGTTTTGCTTTGGTGTCTAAAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATGTAACATTTGTGTGGTTGTTTTGCTTTGGTGTCTAAAGTGC  650

seq1  TACACATTTATTATAAATTAATACACCTATCTGCAAATGTTATACAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTATTATAAATTAATACACCTATCTGCAAATGTTATACAGACT  700

seq1  TTTACCTCTCTGAAATTACTAAATCCCACTCCATCTCTAAATGCTTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTCTCTGAAATTACTAAATCCCACTCCATCTCTAAATGCTTTAAT  750

seq1  TTCTTTCATTTCTCCAACAATTATCTTATATCTTTGCAGGGATTTGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATTTCTCCAACAATTATCTTATATCTTTGCAGGGATTTGCTGA  800

seq1  CTTCCAAAATGATAAGGACACTTGAAAACCTGAAGGAGATTCAAATTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAATGATAAGGACACTTGAAAACCTGAAGGAGATTCAAATTTCC  850

seq1  ACTTCACTTGGTACTTAATTATAAACCATTTTTGTAATAATGATTGTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTTGGTACTTAATTATAAACCATTTTTGTAATAATGATTGTTGG  900

seq1  ACAGCTGCAGGGGGAAAATCATTAACCTTCCCTGAATAAATCTAACATAT  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCA-GGGGAAAATCATTAACCTTCCCTGAATAAATCTAACATAT  949

seq1  CCCCCAATAAAACCTTTGCTCTCTAGGATCATAATGTAACAGAGCTAGAT  1000
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  -CCCCAATAAAACCTTTGCTCTCTAGGATCATAATGT-ACAGAGCTAGAT  997

seq1  ACAATTGCTCTGGTGTTTTCTTACTTGTAGCAGGTTCTGAACAATATTTA  1050
      |||  ||||||||   |||||||| ||||||||| |||||   ||| |||
seq2  ACA--TGCTCTGGGTGTTTCTTAC-TGTAGCAGG-TCTGA--CATA-TTA  1040

seq1  CAGATGTTAACATTTGTCTGTGGATACAGATAAAGATTTTTGAGGTTAAT  1100
      | |||||  |||||||||||||||| ||||| |||| |||||||||  ||
seq2  C-GATGT--ACATTTGTCTGTGGAT-CAGAT-AAGA-TTTTGAGGT--AT  1082

seq1  GATTCTGGCTC  1111
      || ||||||||
seq2  GA-TCTGGCTC  1092