BAC Information

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BAC

Clone NameB6Ng01-333E06
ChromosomeX (Build37)
Map Location 35,237,489 - 35,416,177
singlet/doubletdoublet
Overlap geneLOC436198, Rhox9, LOC100039620, 4930525M21Rik, 4930430D24Rik
Upstream geneSlc25a43, Slc25a5, C330007P06Rik, Ube2a, Nkrf, Sept6, Ankrd58, Rpl39, Upf3b, 2610020O08Rik, Akap14, Ndufa1, Rnf113a1, Gm9, Rhox1, Rhox2, Rhox3, Rhox4a, LOC100039913, Rhox4b, LOC100039948, Rhox4c, EG434760, LOC546295, Rhox4d, LOC100040016, Rhox4e, LOC100040043, LOC621852, Rhox4h, LOC546294, EG621903, EG434766, Rhox4g, EG434758, LOC622301, EG622311, Rhox6, Rhox7, Rhox8
Downstream geneRhox10, Rhox11, Rhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333E06.bB6Ng01-333E06.g
ACCGA119128GA119129
length8391,165
definitionB6Ng01-333E06.b B6Ng01-333E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,237,489 - 35,238,322)(35,415,014 - 35,416,177)
sequence
gaattcaggactctgcagccagcattatgagttgagatgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtccctgtattctgtgccccaattcgtttt
aatattttattttctggtgtggagagatgttctgtggacaatggcacttg
cctgcaagacagatgacccacattcgattcccagaattcaaacaggaagg
acagaaccaagtaactatacaagttatcctctaacctgcccatgtgtgca
ctctaaaatgattcacacaaagagaaaataaataaataaataaataatga
ataaatttgtatttgacctcataatgaagagtttggacggcctcacagcg
aactgaatattagaaatatttggcgggttctatcagtccatcttccattg
tgtgcattagttttaccttgctttctggtcttgtgacaaaacataatgat
cagaagcaatctggggatgaaagagttccttcccttttggagttcacagt
ctatcacttagcaaggggaggcaggaactggaggcaggagccaaggcaga
ggccatgaagagatgctgctcaccagcttgcccctcgtggcttattcagc
ctgcattcttcatgctccggaatgtgctgcacatggtcggtccttcccac
agtcggagagactttcccatatcaatcagtaatcaagaaaatgcccacag
gatttgcttacacaattatacggacattgttcaatggagagtccctcttt
tccagatgtctctagcttctgtgtagttaacaacaaacgtcctcatcagc
caacactgacagtttgtccagtttctaaacatgctagga
gaattctctgcccttcttcatggggatgaatatggcagtgtctatgtttt
cagctgactcaatatttctggtgtgtgtgtgtgtgtgtgtgtgacagttt
tctgtatgtagtacccactcgtgttgctggcatgccattgggttgtacta
ctgtggtatgctgaatgacacgagtggatactacatgcagcggctgggta
tactatgtactttgttgggcataaggggtctgctgagggtagatacttct
cactgggtacaaggctatctggtaggggctgtgggcaaagaagtttagtg
tcatagcccctctgataggggaacacacacattgtaaggtgtgctaggag
tgtaggctggataacctattcctttggcattttcatagggaaccccagaa
gaaccagggttataaacagaattcatgatttcaagaacacgacctgacct
gatgcacatgcctgtcagccagtactgccatcagtgttgaactgattctc
attttaaacaattattacatacattttgatctggaattaggatagaagtg
gaacatatttctgaatggagggttgagaggctcgcatgcctcatcctttc
cttagtttcaagttgtggaggagcaagaaacatttttctgtatagccact
ggcaaattgtctatgttcccataaataacccttcaaccttacaaatacaa
gtacccctaattaaattcaccgagtcacaccataagatatattaacgtgg
agggggactagttgggaagaggaatagattagtgagaaaagaacaagagg
aggtaattgggcgatgaatgtgatcaaaataaacttttctgtgtgaaact
gtaataatgaaatctattatataattactatatgctaattaaaactaaaa
aagacttagaacttcccaacatacaacatatttgtgtatgaaaatgtaag
aaatgcttttaaaagaagtcttaattgagcaaaaaaaaatattgagagct
atggtgtttgaagaactatgaaaaatggtatgcttaatgtttggtatgct
ctaaaaattgggtgtgctgcaataattggtgagcacattcaaattgatga
tgatatttgcatgcgaaatgataaattggtactgtgcctccaaagcaaag
catattaaaccacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_35237489_35238322
seq2: B6Ng01-333E06.b_48_886

seq1  GAATTCAGGACTCTGCAGCCAGCATTATGAGTTGAGATGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTCTGCAGCCAGCATTATGAGTTGAGATGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGTGTGTGTCCCTGTATTCTGTGCCCCAATTCGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTCCCTGTATTCTGTGCCCCAATTCGTTTT  100

seq1  AATATTTTATTTTCTGGTGTGGAGAGATGTTCTGTGGACAATGGCACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTATTTTCTGGTGTGGAGAGATGTTCTGTGGACAATGGCACTTG  150

seq1  CCTGCAAGACAGATGACCCACATTCGATTCCCAGAATTCAAACAGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGACAGATGACCCACATTCGATTCCCAGAATTCAAACAGGAAGG  200

seq1  ACAGAACCAAGTAACTATACAAGTTATCCTCTAACCTGCCCATGTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCAAGTAACTATACAAGTTATCCTCTAACCTGCCCATGTGTGCA  250

seq1  CTCTAAAATGATTCACACAAAGAGAAAATAAATAAATAAATAAATAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAATGATTCACACAAAGAGAAAATAAATAAATAAATAAATAATGA  300

seq1  ATAAATTTGTATTTGACCTCATAATGAAGAGTTTGGACGGCCTCACAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTGTATTTGACCTCATAATGAAGAGTTTGGACGGCCTCACAGCG  350

seq1  AACTGAATATTAGAAATATTTGGCGGGTTCTATCAGTCCATCTTCCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATATTAGAAATATTTGGCGGGTTCTATCAGTCCATCTTCCATTG  400

seq1  TGTGCATTAGTTTTACCTTGCTTTCTGGTCTTGTGACAAAACATAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTAGTTTTACCTTGCTTTCTGGTCTTGTGACAAAACATAATGAT  450

seq1  CAGAAGCAATCTGGGGATGAAAGAGTTCCTTCCCTTTTGGAGTTCACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAATCTGGGGATGAAAGAGTTCCTTCCCTTTTGGAGTTCACAGT  500

seq1  CTATCACTTAGCAAGGGGAGGCAGGAACTGGAGGCAGGAGCCAAGGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTTAGCAAGGGGAGGCAGGAACTGGAGGCAGGAGCCAAGGCAGA  550

seq1  GGCCATGAAGAGATGCTGCTCACCAGCTTGCCCCTCGTGGCTTATTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGAAGAGATGCTGCTCACCAGCTTGCCCCTCGTGGCTTATTCAGC  600

seq1  CTGCATTCTTCATGCTCCGGAATGTGCTGCACATGGTCGGTCCTTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCTTCATGCTCCGGAATGTGCTGCACATGGTCGGTCCTTCCCAC  650

seq1  AGTCGGAGAGACTTTCCCATATCAATCAGTAATCAAGAAAATGCCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGAGAGACTTTCCCATATCAATCAGTAATCAAGAAAATGCCCACAG  700

seq1  GA-TTGCTTACACAATTATACGGACATTGTTCAATGGAGAGTCCCTC-TT  748
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATTTGCTTACACAATTATACGGACATTGTTCAATGGAGAGTCCCTCTTT  750

seq1  TCCAGATGTCTCTAGCTTCTGTGTAGTTAACAACAAACGTCCTCATCAG-  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCAGATGTCTCTAGCTTCTGTGTAGTTAACAACAAACGTCCTCATCAGC  800

seq1  CAACACTGACAGTTTGTCCAG-TTCT-AACATGCTAGGA  834
      ||||||||||||||||||||| |||| ||||||||||||
seq2  CAACACTGACAGTTTGTCCAGTTTCTAAACATGCTAGGA  839

seq1: chrX_35415014_35416177
seq2: B6Ng01-333E06.g_67_1231 (reverse)

seq1  CTGTTGTTTAAATATGCTTTAATAT-GAGGCACAAATAACATTTTA--AA  47
      |||| |||| ||||||||||  | | ||||||| | || || ||||  | 
seq2  CTGTGGTTT-AATATGCTTTGCTTTGGAGGCAC-AGTACCAATTTATCAT  48

seq1  GTC-CAT--AAATAATTCAT--ACAATTTAAATGT-CTACACAATTATTT  91
       || |||  |||||  ||||   |||||| ||||| ||   |||||||| 
seq2  TTCGCATGCAAATA--TCATCATCAATTTGAATGTGCTCACCAATTATTG  96

seq1  AAGCATACCAAATTATTTAAGCATACCAAACAATTAAGCATACCAATATT  141
       |||| ||| |||| ||  |||||||||||| |||||||||||| || ||
seq2  CAGCACACCCAATTTTTAGAGCATACCAAAC-ATTAAGCATACC-ATTTT  144

seq1  TCATAGTTCTTCAAACACCATAGCTCTCAATTATTTTTTTTGCTTCAATT  191
      |||||||||||||||||||||||||||||||  |||||||||| ||||||
seq2  TCATAGTTCTTCAAACACCATAGCTCTCAATATTTTTTTTTGC-TCAATT  193

seq1  AAGACTTCTTTTTAAAAGCATTTCTTACATTTTCATACACAAATATGTTG  241
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTC-TTTTAAAAGCATTTCTTACATTTTCATACACAAATATGTTG  242

seq1  TATGTTGGGAAGTTCTAAGTCTTTTTTAGTTTTAATTAGCATATAGTAAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGGAAGTTCTAAGTCTTTTTTAGTTTTAATTAGCATATAGTAAT  292

seq1  TATATAATAGATTTCATTATTACAGTTTCACACAGAAAAGTTTATTTTGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAGATTTCATTATTACAGTTTCACACAGAAAAGTTTATTTTGA  342

seq1  TCACATTCATCGCCCAATTACCTCCTCTTGTTCTTTTCTCACTAATCTAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCATCGCCCAATTACCTCCTCTTGTTCTTTTCTCACTAATCTAT  392

seq1  TCCTCTTCCCAACTAGTCCCCCTCCACGTTAATATATCTTATGGTGTGAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCCAACTAGTCCCCCTCCACGTTAATATATCTTATGGTGTGAC  442

seq1  TCGGTGAATTTAATTAGGGGTACTTGTATTTGTAAGGTTGAAGGGTTATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGAATTTAATTAGGGGTACTTGTATTTGTAAGGTTGAAGGGTTATT  492

seq1  TATGGGAACATAGACAATTTGCCAGTGGCTATACAGAAAAATGTTTCTTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAACATAGACAATTTGCCAGTGGCTATACAGAAAAATGTTTCTTG  542

seq1  CTCCTCCACAACTTGAAACTAAGGAAAGGATGAGGCATGCGAGCCTCTCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCACAACTTGAAACTAAGGAAAGGATGAGGCATGCGAGCCTCTCA  592

seq1  ACCCTCCATTCAGAAATATGTTCCACTTCTATCCTAATTCCAGATCAAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCATTCAGAAATATGTTCCACTTCTATCCTAATTCCAGATCAAAA  642

seq1  TGTATGTAATAATTGTTTAAAATGAGAATCAGTTCAACACTGATGGCAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAATAATTGTTTAAAATGAGAATCAGTTCAACACTGATGGCAGT  692

seq1  ACTGGCTGACAGGCATGTGCATCAGGTCAGGTCGTGTTCTTGAAATCATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGACAGGCATGTGCATCAGGTCAGGTCGTGTTCTTGAAATCATG  742

seq1  AATTCTGTTTATAACCCTGGTTCTTCTGGGGTTCCCTATGAAAATGCCAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTTATAACCCTGGTTCTTCTGGGGTTCCCTATGAAAATGCCAA  792

seq1  AGGAATAGGTTATCCAGCCTACACTCCTAGCACACCTTACAATGTGTGTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGGTTATCCAGCCTACACTCCTAGCACACCTTACAATGTGTGTG  842

seq1  TTCCCCTATCAGAGGGGCTATGACACTAAACTTCTTTGCCCACAGCCCCT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTATCAGAGGGGCTATGACACTAAACTTCTTTGCCCACAGCCCCT  892

seq1  ACCAGATAGCCTTGTACCCAGTGAGAAGTATCTACCCTCAGCAGACCCCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATAGCCTTGTACCCAGTGAGAAGTATCTACCCTCAGCAGACCCCT  942

seq1  TATGCCCAACAAAGTACATAGTATACCCAGCCGCTGCATGTAGTATCCAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAACAAAGTACATAGTATACCCAGCCGCTGCATGTAGTATCCAC  992

seq1  TCGTGTCATTCAGCATACCACAGTAGTACAACCCAATGGCATGCCAGCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTCATTCAGCATACCACAGTAGTACAACCCAATGGCATGCCAGCAA  1042

seq1  CACGAGTGGGTACTACATACAGAAAACTGTCACACACACACACACACACA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTGGGTACTACATACAGAAAACTGTCACACACACACACACACACA  1092

seq1  CACCAGAAATATTGAGTCAGCTGAAAACATAGACACTGCCATATTCATCC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAATATTGAGTCAGCTGAAAACATAGACACTGCCATATTCATCC  1142

seq1  CCATGAAGAAGGGCAGAGAATTC  1164
      |||||||||||||||||||||||
seq2  CCATGAAGAAGGGCAGAGAATTC  1165