BAC Information

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BAC

Clone NameB6Ng01-333N09
ChromosomeX (Build37)
Map Location 91,605,676 - 91,606,791
singlet/doubletsinglet
Overlap geneLOC631145
Upstream genePola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098
Downstream gene0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333N09.bB6Ng01-333N09.g
ACCGA119497GA119498
length1,1881,114
definitionB6Ng01-333N09.b B6Ng01-333N09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctttggtcatgtctctgatgtaataatccaatcttccatag
actgagccagtgcaggagatattcaacctgagctaagccaggtaaagcag
gtagataggctgtttaattggatcatgggaaggaggctcctaaactgtag
cctagagctagtccaggaaacatggcttcacaaaaaaggagagttcatgg
ccacaggtctagaattaggattgagttaacagactgcaaaggttggggtg
agcatagggctaaggaagaaatgaccccacccccaccccaggaaaggagg
ttctcacacagagggctgcagatgtaggcttgtgagttgacagatggctg
agggctggaggaaggttagaagggaagacgcaacttactcagaaaaagtg
gcctgtgaacagggagggattgtggaccccgttcctcaaccagccaacat
tctttttttttctttttccttttctttttctttttctctcactccttttt
tatttattttttcctttgtgagtctgggttttgctacattgtcctggata
acctcaagttactgaactgaactgatatcctcacctgagactataagaag
agaccactaaactcaacttctgtcttttttttttcgagacagggtttttc
tgtttagcccaggctgtcctcagactcagaaatctgcctgcctctgcctc
ccaagtgctgggattaaaggcgtgcgccaccactgctcagccgcaacttc
tgtcttagttagggttttagtgctgtgaacagacaccataaccaaggaca
acatttaattagggctggcttacaggttcagaggttcagtccattgtcat
caaggtgggagcatggcagcatccaggcaggcatggtgcagaaaggagtt
gtgagttctacatcttcatctgaaggctgctagcaggatactgacttcca
gacagttaggatcaggtcttaagcccacccacagtatacacctacttcac
aaggcacactactacaacaggtcatactctatagtgccacttcctggccg
agttatatacaacatacattcactccctgaccccatagactgttaacata
tgagtcatggggtcaactacctagcatatgccaatcttagcctatgtatc
ggtactagaaaggtactagggaaatgagaatgtaggct
gaattctgaggaaagcagtaacatgataattaaaactgagttttgtatga
taacacaaataggtctgtgggtaagacagtttaaaaagtagatatattgc
tcggacttattcaggactgctaaaattcctctaacgtgactattctcata
ccagaggggtttctgttttattttggttttggtggggaaagaggataggc
atctgtttattgtttgtattcaaataggattatattccttgtactgttct
gacttgcccttttcactaacaagctctcttggttgtctttctattgtgga
atattgttaatattgcaagatttacgcataaagacagagacatttacttg
tgtttatgaatcaaggctacaatggaattgtactctagaatgcactctta
gaaggaaactgccgggctggagagatgctcagtggttaagagcatgtcca
cctttggcagaggaccttagtttgcttcccagcatccacatggtggctca
caattgcttgtaacttcagttctaggggatcttatattctctttttcctt
ctgcaggctcttgtacacatatggtgcacataaattcactcaggctcata
caaatacacatagtaaattaataaacccttaaaataagtgaaactactgg
gtaaaagcaaagtgcatttttaatttcaaggattttttttttgtagtatt
ggcgatcaaacccagatcaaacacgtgttgaatacacattctgccactga
gctaaacctccagttcttaatctagagggtttttttttttttggtagaag
atcactatctcctatgttcaaataaggacacaaattcaaaaatggaaaat
acaacagtgcactaatttcagaaaaatagttatttacttcattcacatta
aaaataaacccagaaaggcaggctggagagatggctcagcagttccatcg
tactgactgatcttccagaggacccagtgggattctagtgcccacattgc
aactgctctcgcttcagtttcaagggatctatccctcttctggtcttcca
cagcattggattgcaatggtagcagagatacacaccgaaggccagactca
tacaattagtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_91605676_91606791
seq2: B6Ng01-333N09.g_68_1181

seq1  GAATTCTGAGGAAAGCAGTAACATGATAATTAAAACTGAGTTTTGTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGAAAGCAGTAACATGATAATTAAAACTGAGTTTTGTATGA  50

seq1  TAACACAAATAGGTCTGTGGGTAAGACAGTTTAAAAAGTAGATATATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAAATAGGTCTGTGGGTAAGACAGTTTAAAAAGTAGATATATTGC  100

seq1  TCGGACTTATTCAGGACTGCTAAAATTCCTCTAACGTGACTATTCTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACTTATTCAGGACTGCTAAAATTCCTCTAACGTGACTATTCTCATA  150

seq1  CCAGAGGGGTTTCTGTTTTATTTTGGTTTTGGTGGGGAAAGAGGATAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGGGTTTCTGTTTTATTTTGGTTTTGGTGGGGAAAGAGGATAGGC  200

seq1  ATCTGTTTATTGTTTGTATTCAAATAGGATTATATTCCTTGTACTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTATTGTTTGTATTCAAATAGGATTATATTCCTTGTACTGTTCT  250

seq1  GACTTGCCCTTTTCACTAACAAGCTCTCTTGGTTGTCTTTCTATTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCCCTTTTCACTAACAAGCTCTCTTGGTTGTCTTTCTATTGTGGA  300

seq1  ATATTGTTAATATTGCAAGATTTACGCATAAAGACAGAGACATTTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTAATATTGCAAGATTTACGCATAAAGACAGAGACATTTACTTG  350

seq1  TGTTTATGAATCAAGGCTACAATGGAATTGTACTCTAGAATGCACTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGAATCAAGGCTACAATGGAATTGTACTCTAGAATGCACTCTTA  400

seq1  GAAGGAAACTGCCGGGCTGGAGAGATGCTCAGTGGTTAAGAGCATGTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAACTGCCGGGCTGGAGAGATGCTCAGTGGTTAAGAGCATGTCCA  450

seq1  CCTTTGGCAGAGGACCTTAGTTTGCTTCCCAGCATCCACATGGTGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCAGAGGACCTTAGTTTGCTTCCCAGCATCCACATGGTGGCTCA  500

seq1  CAATTGCTTGTAACTTCAGTTCTAGGGGATCTTATATTCTCTTTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCTTGTAACTTCAGTTCTAGGGGATCTTATATTCTCTTTTTCCTT  550

seq1  CTGCAGGCTCTTGTACACATATGGTGCACATAAATTCACTCAGGCTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCTCTTGTACACATATGGTGCACATAAATTCACTCAGGCTCATA  600

seq1  CAAATACACATAGTAAATTAATAAACCCTTAAAATAAGTGAAACTACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACACATAGTAAATTAATAAACCCTTAAAATAAGTGAAACTACTGG  650

seq1  GTAAAAGCAAAGTGCATTTTTAATTTCAAGGATTTTTTTTTTGTAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCAAAGTGCATTTTTAATTTCAAGGATTTTTTTTTTGTAGTATT  700

seq1  GGCGATCAAACCCAGATCAAACACGTGTTGAATACACATTCTGCCACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATCAAACCCAGATCAAACACGTGTTGAATACACATTCTGCCACTGA  750

seq1  GCTAAACCTCCAGTTCTTAATCTAGAGGGTTTTTTTTTTTTTGGTAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACCTCCAGTTCTTAATCTAGAGGGTTTTTTTTTTTTTGGTAGAAG  800

seq1  ATCACTATCTCCTATGTTCAAATAAGGACACAAATTCAAAAATGG-AAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCACTATCTCCTATGTTCAAATAAGGACACAAATTCAAAAATGGAAAAT  850

seq1  ACAACAGTGCACTAATTTCAGAAAAATAGTTA-TTAC-TCATTCACATTA  897
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  ACAACAGTGCACTAATTTCAGAAAAATAGTTATTTACTTCATTCACATTA  900

seq1  AAAATAAACCCAG-AAGGCAGGGCTGGAGAGATGGCTCAGCAG-TCCATC  945
      ||||||||||||| |||||| |||||||||||||||||||||| ||||||
seq2  AAAATAAACCCAGAAAGGCA-GGCTGGAGAGATGGCTCAGCAGTTCCATC  949

seq1  GTACTGACTGATCTTCCAGAGGACCCAGGTGGGATTCCTAGTGCCCACAT  995
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GTACTGACTGATCTTCCAGAGGACCCA-GTGGGATT-CTAGTGCCCACAT  997

seq1  TGCAACTGCCTCTCGCTCCAGTTCCAGGGGATCTAATTCCCTCTTCTGGT  1045
      |||||||| |||||||| ||||| || ||||||||  |||||||||||||
seq2  TGCAACTG-CTCTCGCTTCAGTTTCAAGGGATCTA--TCCCTCTTCTGGT  1044

seq1  C-TCCACAGGCATTGTA-TGCCATGG-AGCAGAGATACACA-CGAAGGCA  1091
      | |||||| |||||| | ||| |||| |||||||||||||| ||||||| 
seq2  CTTCCACA-GCATTGGATTGCAATGGTAGCAGAGATACACACCGAAGGCC  1093

seq1  AAACATCCATACAAATAAAGTATAT  1116
      | ||   ||||||| |  |||||||
seq2  AGAC--TCATACAATT--AGTATAT  1114