BAC Information

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BAC

Clone NameB6Ng01-335C19
ChromosomeX (Build37)
Map Location 22,874,969 - 22,876,165
singlet/doubletsinglet
Overlap geneKlhl13
Upstream genePpia-psx_207.1, 1700023I07Rik
Downstream geneEG635719, Wdr44, EG236749, EG214450, EG245376, LOC546271, LOC100043957, LOC100043206
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335C19.bB6Ng01-335C19.g
ACCGA120487GA120488
length1,190966
definitionB6Ng01-335C19.b B6Ng01-335C19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccttgaagggatacaataaactagaggaattcatgaggaccac
aggaagagatggggaaacaggatgaatcatttttatctaggctcaaaatc
ttcaaggatggcccattaaaaaagaaatcaaagaatcagaagacagtggc
atttttaaagggttaactgttttgctaggagactaatctagggcaagaaa
atatccttaggcatgtgaatatcagtattctcaccctatggaatcacatc
ccattatacccagtgccaaatattcagtaagtatttaagctattgttggt
attcagctttgtttcatcctgtttatggatgcaaaatatcttaccattta
ttcaacaatgcataaactacaatattttcatttgtgtcaacaatgagaaa
aaaatttttttatcatattatatatatatttttttgttccagtgaagtaa
ggggaggcagctaataatttcaaaaagtaggtaatgcttgcaagtgtatg
ctctctgacttaagatatccaagacaaaagctgtctacatacccttcatt
ttattgagagcaaaaccccaccagttacctttcaactaatgtgtatgaaa
aaaatatataatccagaggaaaaaagggagcatgaacgttggaaatgtac
cacatcttctcaagtaatcttcaggaagggctggtaggtaggggacataa
aaatcatttcacttgtcttcagaggaacttttaaaactgtattttaatga
cctcatgaattgaaaagacaaaataatccaggccattcacatgtttagtt
ttgtagaaaacaaagtaactactacagagctctctttaggcttgaaagga
aagaaagcaatccatttacattatgctttcattagaatgggtatttattt
cattcaaattcacgaagttagattagttcaaggttatagagggaatggca
gagagggtcagtacagaatgaccagaacaagtctattaatcagtatcata
tatttgggactgtgacaagcattgtattcatctaatatataacttacacc
tccaatttaaaacaccatcatctactacatcatgaacaaacatttccatc
tgctgataaattagtagcctcagaaccatagtgattgttccacttgtaga
agtttcagtcttctagtctaagatgacatacttgagaaaa
gaattccctcagtttgtgtttcttttattgcgtctctttctaattttagg
tcttgaactgtttaattaatttccttcaactatttgctgtttcttggctt
tctttaaagagatttattgatttcctctaattgtttgttggtgttttcca
gttttgtttttaagttttattcatttcttctttaaagacctttatcatct
ttgtacagttggcttaaagtccttttcttgtgcttcagctatgttggaat
actcatggcctgctgtaataggatagctgggctctggtggagacatattg
ctctggtatttaggcatctgggtttgggttgattataggtctagttgcta
gtttctgcatgtgtctttgttgcgtggctgcattttttcttagtttctgt
ttcctgtattgattttaagagggtgtgttagttttgtgttgcctgtttta
ttcgcctgttcaactggcatattcacagggagtatttgctggtgttggag
gctggtgggagacatttggggagctagtttgtgggatccacaggaggcat
ggtggagtgcagctggtgttatgttgtaaagcaaggaatgaccatgatga
ttgagtctgtggaaataaattggagaatacctgcaggtaggctatctgaa
cttctgacaggtgtggcctgtggttgagcaagaggtgtcctcaaggtgat
ataggccaggacacagagacagtgtatgtattgggggcaaggggaggtaa
ggccagaagggatgatctttgtgatccacaggaaatgtagatgtgaaaaa
ggagggctgaagctggtattttcttgtagacctagggatgagcctgaggg
aatgggtgtgctcggtgcagggttggtgtagggtagagagaaagaggact
aggcacctgcctgatttctccccgataaaaatctcaaccatcattcttga
gtgtttatcaaatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_22874969_22876165
seq2: B6Ng01-335C19.b_47_1236

seq1  GAATTCACCTTGAAGGGATACAATAAACTAGAGGAATTCATGAGGACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGAAGGGATACAATAAACTAGAGGAATTCATGAGGACCAC  50

seq1  AGGAAGAGATGGGGAAACAGGATGAATCATTTTTATCTAGGCTCAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGATGGGGAAACAGGATGAATCATTTTTATCTAGGCTCAAAATC  100

seq1  TTCAAGGATGGCCCATTAAAAAAGAAATCAAAGAATCAGAAGACAGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGATGGCCCATTAAAAAAGAAATCAAAGAATCAGAAGACAGTGGC  150

seq1  ATTTTTAAAGGGTTAACTGTTTTGCTAGGAGACTAATCTAGGGCAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGGGTTAACTGTTTTGCTAGGAGACTAATCTAGGGCAAGAAA  200

seq1  ATATCCTTAGGCATGTGAATATCAGTATTCTCACCCTATGGAATCACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTAGGCATGTGAATATCAGTATTCTCACCCTATGGAATCACATC  250

seq1  CCATTATACCCAGTGCCAAATATTCAGTAAGTATTTAAGCTATTGTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATACCCAGTGCCAAATATTCAGTAAGTATTTAAGCTATTGTTGGT  300

seq1  ATTCAGCTTTGTTTCATCCTGTTTATGGATGCAAAATATCTTACCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTTGTTTCATCCTGTTTATGGATGCAAAATATCTTACCATTTA  350

seq1  TTCAACAATGCATAAACTACAATATTTTCATTTGTGTCAACAATGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAATGCATAAACTACAATATTTTCATTTGTGTCAACAATGAGAAA  400

seq1  AAAATTTTTTTATCATATTATATATATATTTTTTTGTTCCAGTGAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTTTATCATATTATATATATATTTTTTTGTTCCAGTGAAGTAA  450

seq1  GGGGAGGCAGCTAATAATTTCAAAAAGTAGGTAATGCTTGCAAGTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCAGCTAATAATTTCAAAAAGTAGGTAATGCTTGCAAGTGTATG  500

seq1  CTCTCTGACTTAAGATATCCAAGACAAAAGCTGTCTACATACCCTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGACTTAAGATATCCAAGACAAAAGCTGTCTACATACCCTTCATT  550

seq1  TTATTGAGAGCAAAACCCCACCAGTTACCTTTCAACTAATGTGTATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGAGCAAAACCCCACCAGTTACCTTTCAACTAATGTGTATGAAA  600

seq1  AAAATATATAATCCAGAGGAAAAAAGGGAGCATGAACGTTGGAAATGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATAATCCAGAGGAAAAAAGGGAGCATGAACGTTGGAAATGTAC  650

seq1  CACATCTTCTCAAGTAATCTTCAGGAAGGGCTGGTAGGTAGGGGACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCTCAAGTAATCTTCAGGAAGGGCTGGTAGGTAGGGGACATAA  700

seq1  AAATCATTTCACTTGTCTTCAGAGGAACTTTTAAAACTGTATTTTAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTCACTTGTCTTCAGAGGAACTTTTAAAACTGTATTTTAATGA  750

seq1  CCTCATGAATTGAAAAGACAAAATAATCCAGGCCATTCACATGTTTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGAATTGAAAAGACAAAATAATCCAGGCCATTCACATGTTTAGTT  800

seq1  TTGTAGAAAACAAAGTAACTACTACAGAGCTCTCTTTAGGCTTGAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAAAACAAAGTAACTACTACAGAGCTCTCTTTAGGCTTGAAAGGA  850

seq1  AAGAAAGCAATCCATTTACATTATGCTTTCATTAGAATGGGTATTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCAATCCATTTACATTATGCTTTCATTAGAATGGGTATTTATTT  900

seq1  CATTCAAATTCACGAAGTTAGATTAGTTCAAGGTTATAGAGGGAATGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAATTCACGAAGTTAGATTAGTTCAAGGTTATAGAGGGAATGGCA  950

seq1  GAGAGGGGTCAGTACAAGAATGACCAGAACAAGTCTATTAATCAGTATCA  1000
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGA-GGGTCAGTAC-AGAATGACCAGAACAAGTCTATTAATCAGTATCA  998

seq1  TATATTTGGGACTGTGACAAGCA-TGTATTCATCTAATATAATTAACTTA  1049
      ||||||||||||||||||||||| |||||||||||||||||  |||||||
seq2  TATATTTGGGACTGTGACAAGCATTGTATTCATCTAATATA--TAACTTA  1046

seq1  CA-CTCC-ATTTAAAACACCATCATCTTACTACATTCATGA--CAACA-T  1094
      || |||| |||||||||||||||||| ||||||| ||||||   |||| |
seq2  CACCTCCAATTTAAAACACCATCATC-TACTACA-TCATGAACAAACATT  1094

seq1  TCCATCTGCTGATAATATTTAAGTTAGCTCAGAA-CATAGTTGAGTTTGG  1143
      ||||||||||||||| |||  |||   ||||||| ||||||   | ||| 
seq2  TCCATCTGCTGATAA-ATT--AGTAGCCTCAGAACCATAGT---GATTGT  1138

seq1  T-CACTTGTAGAGTTTTCAGTCCTTCTTAAATCTATGGATGACATA-TTT  1191
      | ||||||||||  ||||||| |||||  | ||||  ||||||||| || 
seq2  TCCACTTGTAGAAGTTTCAGT-CTTCT--AGTCTA-AGATGACATACTTG  1184

seq1  AGAAAA  1197
      ||||||
seq2  AGAAAA  1190