BAC Information

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BAC

Clone NameB6Ng01-336A15
ChromosomeX (Build37)
Map Location 64,806,743 - 64,892,808
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk2, LOC666824, LOC627734, EG666828
Downstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194, EG236844, LOC385372, LOC627888, LOC434788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336A15.bB6Ng01-336A15.g
ACCGA121087GA121088
length1,2211,093
definitionB6Ng01-336A15.b B6Ng01-336A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,891,556 - 64,892,808)(64,806,743 - 64,807,839)
sequence
gaattcacagactgtggcattatttacatgaaatatacaggtcctttgca
tatgcagtatgccttctaatttagtggatttgggggattattgattgctc
aaatgaatgagtttctgtgtctctataaaacaacaacatatggttcctac
agaaacatctttgtatttgtttcttttcattgctctttctttcacttctt
attgctctttttccctccctttctttcccctttctgttttactctgtcta
gttctttatttcttctgaaacacacacactttttctttgtggtaacctga
aataattagcagaagaattagatggcttaattagatattatgcattctca
gtattactcacaaaattttgtcttgggtaatattcaatgaattcaggact
caaaaatgtcctctcttacaatatatttcagaataaaatatgaatccaat
tctgctaagtgtaaaagtgaccaattatatgaacagctcaattatgtaaa
gtttcatcaatacaaaatttaaccaggacaaaggatactgatgaatcaag
caataagatattaaaatgtttgaaaaacaaatagagaccaagtgagacca
agactttaaaagtaagaaaagacttctgtgagtaaaacttgttaggcaag
agaggaagacactcttcttcaacattttgtttcatatcaaagagaaacag
ctttgcagaacagatttctcttagttaacactgaaaatttaacactatag
aagctattatttttatattcccctaaaaacccttatatcagttttgcttt
aaactataaggtttggagatacactcagctatctttaaatctctcatctt
tttttttcccttgaaaaaagaggttctgatgattgatgatgaattaatga
atagcattctaatgtgatatcaggaaaaaaagggtctcctggtcaaataa
gatgaggacccactttcactaatgcactctagttcctttgtgttcagtaa
cctctgccattgctgcatgttccaaacagcagacaacatacaatttccat
atcactgaaaggggactggaaacatcacacctacagaactgcaatgatac
ctgattgagagagaaaattgttttgtttaatttggttcatgtctaaacct
agttataaaacccactcagcagtcaatgcctgaggatgaacctcatggtt
tatgcacttttggttgttctg

gaattcttgatgctccttaaaggatattggaaggaactgacattgagcta
ggacaagtaagtaagttcaagatcttgatcatcttgataagtccctgaat
atgatgaggcttttgtttatgccttgcttgctccttgactactttgtcct
tgacctggaattgaccttactctttacagataccaagagtgatataaaaa
caaattgggaataaaacaagtttacttcagcacttttaggagtcatgtta
tagtgttgtctaatcacttttctttctttaattctcactcactcccttga
gacactgttgaatgactgagcaggcttagtaagaaaatatatcctaattt
aaatgagccctgttataaaatataaattctatctgatttcacttgttaag
ggttagactgggtgggtaagtatgagagtagctgaatgggtagtgtttca
aaactgtaagatgaggtaattatgaggatcaagcccaccagaatatgatt
ataattgatattaaaatcttgaatgtgtttaactctaatgaactatagaa
gtaacaagacaaatatacaaattttacatttaaaatagtaaggtgctaaa
atgtatactgtgtgttttctaaatcataattaaaaggtatttgaaaataa
aatgaaatgcataacctcaaacatacatattactagttttaaaaagaaaa
tcacaaaactcttcaaagggatataagaaataaaagtaaaagtgataagt
gatctgtgatatttgacataaattttatcaaactatttttgtgtattagc
tttaaattcatttttgtttggtgcatatgaccatttacctacatgtttgt
atgtacatcatggttgtgcctcagcctgtggcagtcaaaagaaggtatca
gataccctggaactgaagtcacaggtgactatgaactatcatttgagtgc
tgggaacacttctgtaagaacagtaagtgtttttaatatttgaatcactc
ctctatccctaaaattgtttttttttttattaaaagtatgctagaaacca
tattattcagagcaaaatcacatgtacaatggagaaatatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_64891556_64892808
seq2: B6Ng01-336A15.b_48_1268 (reverse)

seq1  CAGAACAAAACAAAAAGTGCATAAA-CATGAGGTCAACTCCTCC-CAGGC  48
      ||||||  ||| ||||||||||||| ||||||||    || ||| |||||
seq2  CAGAAC--AACCAAAAGTGCATAAACCATGAGGT----TCATCCTCAGGC  44

seq1  ATGGGGCCTGCCCTGGAGTTGGTTTATATAACTAGTTATAAGACACTGGA  98
      ||   | ||||    |||| ||||| ||||||||| | | ||||| ||  
seq2  AT--TGACTGC---TGAGTGGGTTT-TATAACTAGGT-TTAGACA-TG--  84

seq1  AAACAAAATAAAACAAAACATATTTCTCTCTTCCTATCAGGTATCATTTG  148
       ||| |||| ||||||||||  |||||||||  | ||||||||||| |||
seq2  -AACCAAATTAAACAAAACAATTTTCTCTCT--CAATCAGGTATCA-TTG  130

seq1  CAGTTTCTTGGTTAAGGGTGTGATGTTTCCAGGTCCCCCTTTCAGGTGAT  198
      ||| ||||  ||    ||||||||||||||||   ||||||||| |||||
seq2  CAG-TTCT--GT---AGGTGTGATGTTTCCAG--TCCCCTTTCA-GTGAT  171

seq1  TAATGGATATTTGTATGTTGTCTGCTGTTTGGAACATGCAGCAATGGCAG  248
        ||||| | ||||||||||||||||||||||||||||||||||||||||
seq2  --ATGGA-AATTGTATGTTGTCTGCTGTTTGGAACATGCAGCAATGGCAG  218

seq1  AGGTTACTGAACACAAAGGAACTAGAGTGCATTAGTGAAAGTGGGTCCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTGAACACAAAGGAACTAGAGTGCATTAGTGAAAGTGGGTCCTC  268

seq1  ATCTTATTTGACCAGGAGACCCTTTTTTTTCCTGATATCACATTAGAATG  348
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCTTATTTGACCAGGAGACCC-TTTTTTTCCTGATATCACATTAGAATG  317

seq1  CTATTCATTAATTCATCATCAATCATCAGAACCTCTTTTTTTCAAGGGAA  398
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTATTCATTAATTCATCATCAATCATCAGAACCTC-TTTTTTCAAGGGAA  366

seq1  AAAAAAAGATGAGAGATTTAAAGATAGCTGAGTGTATCTCCAAACCTTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATGAGAGATTTAAAGATAGCTGAGTGTATCTCCAAACCTTAT  416

seq1  AGTTTAAAGCAAAACTGATATAAGGGTTTTTAGGGGAATATAAAAATAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGCAAAACTGATATAAGGGTTTTTAGGGGAATATAAAAATAAT  466

seq1  AGCTTCTATAGTGTTAAATTTTCAGTGTTAACTAAGAGAAATCTGTTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTATAGTGTTAAATTTTCAGTGTTAACTAAGAGAAATCTGTTCTG  516

seq1  CAAAGCTGTTTCTCTTTGATATGAAACAAAATGTTGAAGAAGAGTGTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGTTTCTCTTTGATATGAAACAAAATGTTGAAGAAGAGTGTCTT  566

seq1  CCTCTCTTGCCTAACAAGTTTTACTCACAGAAGTCTTTTCTTACTTTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGCCTAACAAGTTTTACTCACAGAAGTCTTTTCTTACTTTTAA  616

seq1  AGTCTTGGTCTCACTTGGTCTCTATTTGTTTTTCAAACATTTTAATATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGTCTCACTTGGTCTCTATTTGTTTTTCAAACATTTTAATATCT  666

seq1  TATTGCTTGATTCATCAGTATCCTTTGTCCTGGTTAAATTTTGTATTGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTGATTCATCAGTATCCTTTGTCCTGGTTAAATTTTGTATTGAT  716

seq1  GAAACTTTACATAATTGAGCTGTTCATATAATTGGTCACTTTTACACTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTACATAATTGAGCTGTTCATATAATTGGTCACTTTTACACTTA  766

seq1  GCAGAATTGGATTCATATTTTATTCTGAAATATATTGTAAGAGAGGACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTGGATTCATATTTTATTCTGAAATATATTGTAAGAGAGGACAT  816

seq1  TTTTGAGTCCTGAATTCATTGAATATTACCCAAGACAAAATTTTGTGAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTCCTGAATTCATTGAATATTACCCAAGACAAAATTTTGTGAGT  866

seq1  AATACTGAGAATGCATAATATCTAATTAAGCCATCTAATTCTTCTGCTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGAGAATGCATAATATCTAATTAAGCCATCTAATTCTTCTGCTAA  916

seq1  TTATTTCAGGTTACCACAAAGAAAAAGTGTGTGTGTTTCAGAAGAAATAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGGTTACCACAAAGAAAAAGTGTGTGTGTTTCAGAAGAAATAA  966

seq1  AGAACTAGACAGAGTAAAACAGAAAGGGGAAAGAAAGGGAGGGAAAAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGACAGAGTAAAACAGAAAGGGGAAAGAAAGGGAGGGAAAAAGA  1016

seq1  GCAATAAGAAGTGAAAGAAAGAGCAATGAAAAGAAACAAATACAAAGATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGAAGTGAAAGAAAGAGCAATGAAAAGAAACAAATACAAAGATG  1066

seq1  TTTCTGTAGGAACCATATGTTGTTGTTTTATAGAGACACAGAAACTCATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAGGAACCATATGTTGTTGTTTTATAGAGACACAGAAACTCATT  1116

seq1  CATTTGAGCAATCAATAATCCCCCAAATCCACTAAATTAGAAGGCATACT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGCAATCAATAATCCCCCAAATCCACTAAATTAGAAGGCATACT  1166

seq1  GCATATGCAAAGGACCTGTATATTTCATGTAAATAATGCCACAGTCTGTG  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCAAAGGACCTGTATATTTCATGTAAATAATGCCACAGTCTGTG  1216

seq1  AATTC  1253
      |||||
seq2  AATTC  1221


seq1: chrX_64806743_64807839
seq2: B6Ng01-336A15.g_68_1160

seq1  GAATTCTTGATGCTCCTTAAAGGATATTGGAAGGAACTGACATTGAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATGCTCCTTAAAGGATATTGGAAGGAACTGACATTGAGCTA  50

seq1  GGACAAGTAAGTAAGTTCAAGATCTTGATCATCTTGATAAGTCCCTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTAAGTAAGTTCAAGATCTTGATCATCTTGATAAGTCCCTGAAT  100

seq1  ATGATGAGGCTTTTGTTTATGCCTTGCTTGCTCCTTGACTACTTTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGGCTTTTGTTTATGCCTTGCTTGCTCCTTGACTACTTTGTCCT  150

seq1  TGACCTGGAATTGACCTTACTCTTTACAGATACCAAGAGTGATATAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGAATTGACCTTACTCTTTACAGATACCAAGAGTGATATAAAAA  200

seq1  CAAATTGGGAATAAAACAAGTTTACTTCAGCACTTTTAGGAGTCATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGGGAATAAAACAAGTTTACTTCAGCACTTTTAGGAGTCATGTTA  250

seq1  TAGTGTTGTCTAATCACTTTTCTTTCTTTAATTCTCACTCACTCCCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGTCTAATCACTTTTCTTTCTTTAATTCTCACTCACTCCCTTGA  300

seq1  GACACTGTTGAATGACTGAGCAGGCTTAGTAAGAAAATATATCCTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTGAATGACTGAGCAGGCTTAGTAAGAAAATATATCCTAATTT  350

seq1  AAATGAGCCCTGTTATAAAATATAAATTCTATCTGATTTCACTTGTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCCCTGTTATAAAATATAAATTCTATCTGATTTCACTTGTTAAG  400

seq1  GGTTAGACTGGGTGGGTAAGTATGAGAGTAGCTGAATGGGTAGTGTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGACTGGGTGGGTAAGTATGAGAGTAGCTGAATGGGTAGTGTTTCA  450

seq1  AAACTGTAAGATGAGGTAATTATGAGGATCAAGCCCACCAGAATATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAAGATGAGGTAATTATGAGGATCAAGCCCACCAGAATATGATT  500

seq1  ATAATTGATATTAAAATCTTGAATGTGTTTAACTCTAATGAACTATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATATTAAAATCTTGAATGTGTTTAACTCTAATGAACTATAGAA  550

seq1  GTAACAAGACAAATATACAAATTTTACATTTAAAATAGTAAGGTGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGACAAATATACAAATTTTACATTTAAAATAGTAAGGTGCTAAA  600

seq1  ATGTATACTGTGTGTTTTCTAAATCATAATTAAAAGGTATTTGAAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACTGTGTGTTTTCTAAATCATAATTAAAAGGTATTTGAAAATAA  650

seq1  AATGAAATGCATAACCTCAAACATACATATTACTAGTTTTAAAAAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGCATAACCTCAAACATACATATTACTAGTTTTAAAAAGAAAA  700

seq1  TCACAAAACTCTTCAAAGGGATATAAGAAATAAAAGTAAAAGTGATAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAACTCTTCAAAGGGATATAAGAAATAAAAGTAAAAGTGATAAGT  750

seq1  GATCTGTGATATTTGACATAAATTTTATCAAACTATTTTTGTGTATTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGATATTTGACATAAATTTTATCAAACTATTTTTGTGTATTAGC  800

seq1  TTTAAATTCATTTTTGTTTGGTGCATATGACCATTTACCTACATGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTCATTTTTGTTTGGTGCATATGACCATTTACCTACATGTTTGT  850

seq1  ATGTACATCATGGTTGTGCCTCAGGCCTGTGGCAGTCAAAAGAAGGTATC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGTACATCATGGTTGTGCCTCA-GCCTGTGGCAGTCAAAAGAAGGTATC  899

seq1  AGATACCCTGGAACTGAAGTCACAGGTGACTATGAACTATCATTTGAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCTGGAACTGAAGTCACAGGTGACTATGAACTATCATTTGAGTG  949

seq1  CTGGGAACACTTCTGTAAGAACAGTAAGTGTTTTTAATATTTGAATCACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGGAACACTTCTGTAAGAACAGTAAGTGTTTTTAATATTTGAATCACT  999

seq1  TCTCTATCCCCTAAAATTG-TTTTTTTTTTATTAAAAGTAATGCTAGAAA  1049
       |||||| ||||||||||| ||||||||||||||||||| ||||||||||
seq2  CCTCTAT-CCCTAAAATTGTTTTTTTTTTTATTAAAAGT-ATGCTAGAAA  1047

seq1  CCATATTA-TCAGAAGCAAAATCCAACATGTACAATGGAGAAATATTTT  1097
      |||||||| |||| |||||||||  ||||||||||||||||||||||||
seq2  CCATATTATTCAG-AGCAAAATC--ACATGTACAATGGAGAAATATTTT  1093


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