BAC Information

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BAC

Clone NameB6Ng01-338H22
ChromosomeX (Build37)
Map Location 162,353,182 - 162,460,855
singlet/doubletdoublet
Overlap genenone
Upstream geneMospd2, Fancb, LOC627045, Glra2, LOC100040753
Downstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338H22.bB6Ng01-338H22.g
ACCGA122780GA122781
length1,1011,157
definitionB6Ng01-338H22.b B6Ng01-338H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,459,742 - 162,460,855)(162,353,182 - 162,354,340)
sequence
gaattccctaagtcccatctgtcctctaagaatcagttctggtactgttt
ctcccagaagctttacttaaaattactttctacttgcccccttctttttg
ttgaaaactgtcccatcctgtatctttccactttgacatagagttcatgt
gcaacatacaacaaattggaagatttgggacggtaagaactgtcccttat
tcaattttgaagaattatagttttactcatatgaaatcagaaaagcaggc
aaagcctgccaaaggtgatgctagaactcttatttgacaggtggcaaagt
gagacaggaaagaaaagaagccaagaaggggtttgtaaaatggatgtgat
actgcttgcaccagtgggtcctactcagaatcttagtattaatgacacat
gaagaacatcatgactgtctctatcaatgacatgggttgctggaatattt
aactagctgctttctttcttctctggaaatgggttatccacgaatgtata
aaatttcttgtggggtcagacatctgtaaggtgcattgtattggcaaatt
gtcctatgctatttaagcttgttgaaaccagactattttcccagatacca
ccaagtttctttcaagtattctttaaaatattcttcctccaaagctcttt
ctctgggaatgatctaacttccctcaggctgtgacatggaaagaagagaa
cagcaaaagcccccaagagtaaaaatgctatttctttgacaacagctaga
aggtaaacaattttcagtgggtgtcattattgtttactccatgatataaa
gacaccagaagtgagaaggggaagtctgaggttctactatgagaagctca
tccatggagagaaagttcaattgcaaggtccaactaagtgcttcaatgtt
cctagtcatttttgttggatctttgtaagccctcaatttgttgatgttat
cttctcatgctacttgcttttatttggaagccctacccagagacactctg
ctctgcaggacccttgatcagactatagctgcagcatcacaggtttcctc
agtcaggttctgctacatgtttgtagtctcatctgatgtatcctttgttt
g

gaattcttatgggcagaattactactatgggaggtaaaggcgggacatac
tttctaaataatagatgtttcaacagattcaggactgttaccatcatatt
cctcaataggaaagacttttcaaaacaattcttggaaaagtgtgttacaa
aatcaaataatagttatttaaaacaataagcaatcaaaaggaaaagactg
tcctaagataagtgtgcattagcctacacatagcaaataacatatagctt
aagacataggttcaactaccaaaagaatatggatgctgtattagtcaggg
ttttactgctgtgaacagacaccatgaccaaggcaagtcataaaaaaacg
acatttagttggggctggcttacaggttcagaggttcagtccattatcat
caaggtgggagcatggcagtatccagacaggcatggcgcaggaggagctg
agagttctgtgtcttcatccaaaggctactagtggaagactgacttccag
gcaactagggtgaggatcttatacccacacccacagtgacacacccattc
taaccaggtcacacctattccaacaaggccacaccttcagatggtgccac
tccctggtccaaggatatacaaaccatcacagatgactacctggaaagca
tttggaaacagtggacataaatggtagagataatgataagggaaaattct
ccaagtaagatgtgtttctggctccactaaaatggcttaagtcactgaaa
gatttagaaagctataggattatatttcgtctaaaaatagtgatacaggg
agaagagaaaacatacacacacaaaaaaaggacatagaggctaaagagac
tagaatgtttactctgctgctaagggtgttggtaaaaggacagtgagaaa
tacagaaatcagtcgttggatgtgttgtctaaagaataatagcattggcg
tgcgtgacagaagcttgcacagacattaatgacagggaagaaataaatcc
caggttatgagctgtataagtcatttgtctcaactaaacaccaagagtac
tctgatcataatataccaataaggattttaatgtaaatgttaacgaacca
atcaaaaagaaaatatattaatccttcattattctttcctctattccata
tctctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_162459742_162460855
seq2: B6Ng01-338H22.b_47_1147 (reverse)

seq1  CAAACAAAAGATAACATCAGATTGGAGACTTACAAACATGTAGCAGAAAC  50
      |||||||| ||| |||||||||  ||||| |||||||||||||||||| |
seq2  CAAACAAAGGAT-ACATCAGAT--GAGAC-TACAAACATGTAGCAGAACC  46

seq1  TGACTGAGGAAACCCTGTTGATGCTGCCAGCTATAGTTCCTGATCAAGGG  100
      |||||||||||| |||| |||||||| ||||||||||  |||||||||||
seq2  TGACTGAGGAAA-CCTG-TGATGCTG-CAGCTATAGT--CTGATCAAGGG  91

seq1  TCCTTGGCAGAGCAGAGTGTCCTCTGGGTAAGGCTTCCAAATAAAAGCAA  150
      ||||  |||||||||||||| ||||||||| |||||||||||||||||||
seq2  TCCT--GCAGAGCAGAGTGT-CTCTGGGTAGGGCTTCCAAATAAAAGCAA  138

seq1  GTAGCATGAGAAAGATAACATCAACAAATTGAGGGCTTACAAAGATCCAA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATGAG-AAGATAACATCAACAAATTGAGGGCTTACAAAGATCCAA  187

seq1  CAAAAATGACTAGGAACATTGAAGCACTTAGTTGGACCTTGCAATTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGACTAGGAACATTGAAGCACTTAGTTGGACCTTGCAATTGAAC  237

seq1  TTTCTCTCCATGGATGAGCTTCTCATAGTAGAACCTCAGACTTCCCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCATGGATGAGCTTCTCATAGTAGAACCTCAGACTTCCCCTTC  287

seq1  TCACTTCTGGTGTCTTTATATCATGGAGTAAACAATAATGACACCCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGGTGTCTTTATATCATGGAGTAAACAATAATGACACCCACTG  337

seq1  AAAATTGTTTACCTTCTAGCTGTTGTCAAAGAAATAGCATTTTTACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTTTACCTTCTAGCTGTTGTCAAAGAAATAGCATTTTTACTCTT  387

seq1  GGGGGCTTTTGCTGTTCTCTTCTTTCCATGTCACAGCCTGAGGGAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTTTTGCTGTTCTCTTCTTTCCATGTCACAGCCTGAGGGAAGTTA  437

seq1  GATCATTCCCAGAGAAAGAGCTTTGGAGGAAGAATATTTTAAAGAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTCCCAGAGAAAGAGCTTTGGAGGAAGAATATTTTAAAGAATACT  487

seq1  TGAAAGAAACTTGGTGGTATCTGGGAAAATAGTCTGGTTTCAACAAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAACTTGGTGGTATCTGGGAAAATAGTCTGGTTTCAACAAGCTT  537

seq1  AAATAGCATAGGACAATTTGCCAATACAATGCACCTTACAGATGTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCATAGGACAATTTGCCAATACAATGCACCTTACAGATGTCTGAC  587

seq1  CCCACAAGAAATTTTATACATTCGTGGATAACCCATTTCCAGAGAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGAAATTTTATACATTCGTGGATAACCCATTTCCAGAGAAGAAA  637

seq1  GAAAGCAGCTAGTTAAATATTCCAGCAACCCATGTCATTGATAGAGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGCTAGTTAAATATTCCAGCAACCCATGTCATTGATAGAGACAG  687

seq1  TCATGATGTTCTTCATGTGTCATTAATACTAAGATTCTGAGTAGGACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGTTCTTCATGTGTCATTAATACTAAGATTCTGAGTAGGACCCA  737

seq1  CTGGTGCAAGCAGTATCACATCCATTTTACAAACCCCTTCTTGGCTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCAAGCAGTATCACATCCATTTTACAAACCCCTTCTTGGCTTCTT  787

seq1  TTCTTTCCTGTCTCACTTTGCCACCTGTCAAATAAGAGTTCTAGCATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTGTCTCACTTTGCCACCTGTCAAATAAGAGTTCTAGCATCAC  837

seq1  CTTTGGCAGGCTTTGCCTGCTTTTCTGATTTCATATGAGTAAAACTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCAGGCTTTGCCTGCTTTTCTGATTTCATATGAGTAAAACTATAA  887

seq1  TTCTTCAAAATTGAATAAGGGACAGTTCTTACCGTCCCAAATCTTCCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAATTGAATAAGGGACAGTTCTTACCGTCCCAAATCTTCCAAT  937

seq1  TTGTTGTATGTTGCACATGAACTCTATGTCAAAGTGGAAAGATACAGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTATGTTGCACATGAACTCTATGTCAAAGTGGAAAGATACAGGAT  987

seq1  GGGACAGTTTTCAACAAAAAGAAGGGGGCAAGTAGAAAGTAATTTTAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTTTTCAACAAAAAGAAGGGGGCAAGTAGAAAGTAATTTTAAGT  1037

seq1  AAAGCTTCTGGGAGAAACAGTACCAGAACTGATTCTTAGAGGACAGATGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCTGGGAGAAACAGTACCAGAACTGATTCTTAGAGGACAGATGG  1087

seq1  GACTTAGGGAATTC  1114
      ||||||||||||||
seq2  GACTTAGGGAATTC  1101


seq1: chrX_162353182_162354340
seq2: B6Ng01-338H22.g_64_1220

seq1  GAATTCTTATGGGCAGAATTACTACTATGGGAGGTAAAGGCGGGACATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGGGCAGAATTACTACTATGGGAGGTAAAGGCGGGACATAC  50

seq1  TTTCTAAATAATAGATGTTTCAACAGATTCAGGACTGTTACCATCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATAATAGATGTTTCAACAGATTCAGGACTGTTACCATCATATT  100

seq1  CCTCAATAGGAAAGACTTTTCAAAACAATTCTTGGAAAAGTGTGTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATAGGAAAGACTTTTCAAAACAATTCTTGGAAAAGTGTGTTACAA  150

seq1  AATCAAATAATAGTTATTTAAAACAATAAGCAATCAAAAGGAAAAGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATAATAGTTATTTAAAACAATAAGCAATCAAAAGGAAAAGACTG  200

seq1  TCCTAAGATAAGTGTGCATTAGCCTACACATAGCAAATAACATATAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGATAAGTGTGCATTAGCCTACACATAGCAAATAACATATAGCTT  250

seq1  AAGACATAGGTTCAACTACCAAAAGAATATGGATGCTGTATTAGTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAGGTTCAACTACCAAAAGAATATGGATGCTGTATTAGTCAGGG  300

seq1  TTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCATAAAAAAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCATAAAAAAACG  350

seq1  ACATTTAGTTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGTTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCAT  400

seq1  CAAGGTGGGAGCATGGCAGTATCCAGACAGGCATGGCGCAGGAGGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGGAGCATGGCAGTATCCAGACAGGCATGGCGCAGGAGGAGCTG  450

seq1  AGAGTTCTGTGTCTTCATCCAAAGGCTACTAGTGGAAGACTGACTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTGTGTCTTCATCCAAAGGCTACTAGTGGAAGACTGACTTCCAG  500

seq1  GCAACTAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGGGTGAGGATCTTATACCCACACCCACAGTGACACACCCATTC  550

seq1  TAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTGCCAC  600

seq1  TCCCTGGTCCAAGGATATACAAACCATCACAGATGACTACCTGGAAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTCCAAGGATATACAAACCATCACAGATGACTACCTGGAAAGCA  650

seq1  TTTGGAAACAGTGGACATAAATGGTAGAGATAATGATAAGGGAAAATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAACAGTGGACATAAATGGTAGAGATAATGATAAGGGAAAATTCT  700

seq1  CCAAGTAAGATGTGTTTCTGGCTCCACTAAAATGGCTTAAGTCACTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAAGATGTGTTTCTGGCTCCACTAAAATGGCTTAAGTCACTGAAA  750

seq1  GATTTAGAAAGCTATAGGATTATATTTCGTCTAAAAATAGTGATACAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGAAAGCTATAGGATTATATTTCGTCTAAAAATAGTGATACAGGG  800

seq1  AGAAGAGAAAACATACACACACAAAAAAAGGACATAGAGGCTAAAGAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAAACATACACACACAAAAAAAGGACATAGAGGCTAAAGAGAC  850

seq1  TAGAATGTTTACTCTGCTGCTAAGGGTGTTGGTAAAAGGACAGTGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTTTACTCTGCTGCTAAGGGTGTTGGTAAAAGGACAGTGAGAAA  900

seq1  TACAGAAATCAGTCGTTGGATGTGTTGTCTAAAGAATAATAGCATTGGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAATCAGTCGTTGGATGTGTTGTCTAAAGAATAATAGCATTGGCG  950

seq1  TGCGTGACAGAAGCTTGCACAGACATTAATGACAAGGGAAGAAATAAATC  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCGTGACAGAAGCTTGCACAGACATTAATGAC-AGGGAAGAAATAAATC  999

seq1  CCAGGTTATGAGCTGTATAAAGTCATTTGTCTCAACTAAACA-CAAGAGT  1049
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  CCAGGTTATGAGCTGTAT-AAGTCATTTGTCTCAACTAAACACCAAGAGT  1048

seq1  AACTCTGAATCATTAATATA-CAATAAGAATTTTAAATGTAAATGTTAAC  1098
       |||||| |||| ||||||| ||||||| ||||| |||||||||||||||
seq2  -ACTCTG-ATCA-TAATATACCAATAAGGATTTT-AATGTAAATGTTAAC  1094

seq1  AGACC-ATTAAAAAGAAAATATATTATCCTTTCAATTATTCTTT-CTCTA  1146
        ||| || |||||||||||||||||  | ||| |||||||||| |||||
seq2  GAACCAATCAAAAAGAAAATATATTAATCCTTC-ATTATTCTTTCCTCTA  1143

seq1  -TCATTATCTCTTA  1159
       ||  |||||||||
seq2  TTCCATATCTCTTA  1157


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